R. Ryantm
acf23020f0
snakemake: 7.8.1 -> 7.8.2
2022-06-09 19:49:56 +00:00
Robert Scott
3b6bc4b69c
treewide: set sourceProvenance for packages containing downloaded jars
...
these are the easily identifiable cases and will not be comprehensive
2022-06-04 19:47:57 +01:00
R. Ryantm
e9fb739e59
snakemake: 7.8.0 -> 7.8.1
2022-06-02 01:20:40 +00:00
R. RyanTM
7a54d237e0
snakemake: 7.7.0 -> 7.8.0 ( #174592 )
2022-05-30 10:51:36 -04:00
Rick van Schijndel
433701147a
treewide: pkgs/applications: mark broken for aarch64-linux
2022-05-30 13:42:58 +02:00
Rick van Schijndel
90869787c5
boinc: mark broken for aarch64
2022-05-29 10:56:03 +02:00
Fabian Affolter
44b8ec5ccb
Merge pull request #173416 from r-ryantm/auto-update/snakemake
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snakemake: 7.6.2 -> 7.7.0
2022-05-17 20:39:48 +02:00
R. Ryantm
a52b64015a
snakemake: 7.6.2 -> 7.7.0
2022-05-17 16:18:18 +00:00
Dmitry Kalinkin
fdf0806386
root5: fix build with recent gcc
2022-05-16 11:53:42 -04:00
R. Ryantm
5b55f851ac
snakemake: 7.6.1 -> 7.6.2
2022-05-07 16:16:09 +00:00
R. Ryantm
166b1378fe
snakemake: 7.5.0 -> 7.6.1
2022-05-04 16:06:44 +00:00
Fabian Affolter
8b176291d7
snakemake: 6.15.5 -> 7.5.0
2022-05-01 13:02:10 +02:00
Serge K
1248ea16e1
colmap: fix for cuda11.6/gcc11 ( #169623 )
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* colmap: force nvcc std=c++14 after gcc11 bump
* colmap: optional -> optionals
* colmap: sha256 -> hash
* colmapWithCuda: force CUDA_ENABLED=ON safeguard
* colmapWithCuda: add opengl runpath
2022-04-27 16:09:30 -07:00
Ryan Mulligan
f05a748058
Merge pull request #169246 from r-ryantm/auto-update/bada-bib
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bada-bib: 0.6.1 -> 0.6.2
2022-04-24 13:58:11 -07:00
veprbl
2511bad8aa
Merge pull request #168973 from veprbl/pr/root5_glibc_fix
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root5: fix for glibc
2022-04-19 14:56:09 -04:00
R. Ryantm
9919952421
bada-bib: 0.6.1 -> 0.6.2
2022-04-19 00:53:01 +00:00
Dmitry Kalinkin
81f9e28844
root5: fix for glibc
2022-04-16 17:20:16 -04:00
Fabián Heredia Montiel
5275050ab0
fityk: add -std=c++11 flag for gcc11 and later
2022-04-16 11:11:46 -05:00
github-actions[bot]
bf63dd7434
Merge staging-next into staging
2022-04-10 18:01:38 +00:00
Lassulus
973fa1917c
Merge pull request #162300 from r-ryantm/auto-update/cwltool
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cwltool: 3.1.20220221074232 -> 3.1.20220224085855
2022-04-10 13:37:54 +01:00
Martin Weinelt
bf1914e12a
Merge remote-tracking branch 'origin/staging-next' into staging
2022-04-05 04:05:02 +02:00
Ryan Mulligan
b56cf0ed6a
Merge pull request #167069 from r-ryantm/auto-update/bada-bib
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bada-bib: 0.6.0 -> 0.6.1
2022-04-04 13:51:15 -07:00
Martin Weinelt
f95a3d1140
Merge remote-tracking branch 'origin/staging-next' into staging
2022-04-04 00:46:25 +02:00
R. Ryantm
2a5b81d50f
bada-bib: 0.6.0 -> 0.6.1
2022-04-03 19:11:54 +00:00
ajs124
f9ad6fb744
openmvs: remove after being marked broken for over two years
...
It was marked in commit 796050fedd
2022-04-03 16:14:19 +01:00
github-actions[bot]
9aa014c46a
Merge staging-next into staging
2022-03-31 12:02:10 +00:00
R. Ryantm
53dff2f7c8
rink: 0.6.2 -> 0.6.3
2022-03-28 18:13:37 +00:00
github-actions[bot]
8357b101a5
Merge staging-next into staging
2022-03-25 12:02:05 +00:00
davidak
6ea8d5ee71
Merge pull request #165297 from Stunkymonkey/treewide-pname-version-17
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treewide: rename name to pname&version
2022-03-24 16:38:33 +01:00
Doron Behar
4a02c56a7d
Merge pull request #164746 from ncfavier/makeWrapper-chdir
2022-03-24 13:51:27 +02:00
Felix Buehler
3bc5196252
treewide: rename name to pname&version
2022-03-23 22:55:50 +01:00
Millian Poquet
9ff032c291
simgrid: 3.30 -> 3.31
...
- addition of the optional eigen dependency, used by a new simulation
model (bmf) that looks very promising to take interference phenomena
into account while remaining coarse-grained.
- enabled the new dependency by default as I think this is interesting
for most users.
2022-03-22 14:52:22 +01:00
Armeen Mahdian
858e03cf1f
golly-beta: remove
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Golly is more up to date
2022-03-21 07:08:53 -05:00
Naïm Favier
9160044f5f
treewide/makeWrapper: replace --run cd with --chdir
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Lay the groundwork for switching to binary wrappers by reducing uses
of `--run` (which is not supported by `makeBinaryWrapper`).
2022-03-19 09:46:31 +01:00
Rasmus Thomsen
69895c6248
bada-bib: 0.5.1 -> 0.6.0
2022-03-15 12:50:26 +01:00
Dmitry Kalinkin
149d68268d
root: fix ROOTConfig.cmake.in patching
2022-03-04 21:04:19 -05:00
R. Ryantm
de0ff65232
cwltool: 3.1.20220221074232 -> 3.1.20220224085855
2022-03-01 03:46:50 +00:00
K900
cb2cfba6f7
treewide: switch all desktop file generators to new API
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Notably:
- remove explicit arguments that match the defaults
- convert everything to the right Nix types
2022-02-25 13:40:38 -08:00
R. Ryantm
d6a24fc108
cwltool: 3.1.20220217222804 -> 3.1.20220221074232
2022-02-24 15:52:49 -05:00
Bobby Rong
93883402a4
Merge pull request #160594 from Cogitri/bada-bib
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bada-bib: 0.4.1 -> 0.5.1
2022-02-22 12:10:40 +08:00
Rasmus Thomsen
87c1d9f92c
bada-bib: 0.4.1 -> 0.5.1
2022-02-21 16:33:50 +01:00
R. Ryantm
c35aa0a0f3
cwltool: 3.1.20220217190813 -> 3.1.20220217222804
2022-02-21 01:31:33 -05:00
Millian Poquet
bc2604732e
simgrid: mark as broken on darwin
2022-02-19 10:05:17 +01:00
Millian Poquet
3f804f68bc
simgrid: 3.28 -> 3.30 + python + clean
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- use latest SimGrid release
- enable the python binding (in new output "python")
- reviews from PR 141040 have been applied
2022-02-19 10:05:12 +01:00
R. Ryantm
b715fcd9d9
cwltool: 3.1.20220210171524 -> 3.1.20220217190813
2022-02-18 00:36:37 -05:00
R. RyanTM
ac1c96ecec
colmap: 3.6 -> 3.7
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* colmap: 3.6 -> 3.7 (#159198 )
* colmap: license is BSD-3-Clause
Co-authored-by: Renaud <c0bw3b@users.noreply.github.com>
2022-02-18 00:29:14 +01:00
Daniel Wheeler
4befe7a89f
snakemake: 6.10.0 -> 6.15.5 ( #159026 )
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Fetch from GitHub rather than PyPI so tests are included.
2022-02-17 18:06:23 -05:00
Zhong Jianxin
e8f3914985
treewide: Replace transfig with fig2dev
...
Reasons:
- transfig never get upstream update since it was added to nixpkgs 2006,
according to [fig2dev Debian changelog][1], upstream maintainership
was taken over at 2016, and renamed to fig2dev.
- [Debian][2], [ArchLinux][3], [HomeBrew][4] all use fig2dev to replace
transfig.
- transfig builds [failed][5] on aarch64-darwin, fig2dev builds fine.
- One less package to maintain.
[1]: https://salsa.debian.org/debian/fig2dev/-/blob/debian/1%253.2.6_beta-1/debian/changelog
[2]: https://packages.debian.org/bullseye/transfig
[3]: https://archlinux.org/packages/community/x86_64/fig2dev/
[4]: https://formulae.brew.sh/formula/fig2dev
[5]: https://hydra.nixos.org/build/163404782/nixlog/2
2022-02-15 10:13:56 +08:00
R. Ryantm
2220d35562
bada-bib: 0.3.0 -> 0.4.1
2022-02-12 22:22:46 -08:00
R. Ryantm
24b505484b
cytoscape: 3.9.0 -> 3.9.1
2022-02-12 21:13:11 -08:00
