R. Ryantm
1631ffae8d
cwltool: 3.1.20220204090313 -> 3.1.20220210171524
2022-02-11 12:44:06 -05:00
R. RyanTM
1bfc1730e1
cwltool: 3.1.20220202173120 -> 3.1.20220204090313 ( #158272 )
2022-02-05 15:14:21 -05:00
Sandro
63a6539b76
Merge pull request #157198 from afontaine/afontaine/correct-fah-shortcuts
2022-02-04 18:26:20 +01:00
R. Ryantm
af3af2df32
cwltool: 3.1.20220124184855 -> 3.1.20220202173120
2022-02-03 20:06:12 -05:00
markuskowa
65bc2de0ef
Merge pull request #152447 from Cogitri/bada-bib
...
bada-bib: init at 0.3.0
2022-02-01 22:26:26 +01:00
Robert Schütz
a13fe11c59
sasview: 4.2.0 -> 5.0.4
2022-01-30 20:47:10 +00:00
Andrew Fontaine
3c0680b783
fahviewer: fix variable substitution for shortcut
...
Because single quotes are used in the sed command, the application
shortcut had the literal $out instead of the package path.
2022-01-28 16:47:24 -05:00
Andrew Fontaine
ba785adb28
fahcontrol: fix variable substitution for shortcut
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Because single quotes are used in the sed command, the application
shortcut had the literal $out instead of the package path.
2022-01-28 16:46:52 -05:00
Yipeng Sun
54cbee8d97
root: tweak wrapping flags for auxiliary programs, avoid forcing CMAKE_CXX_STANDARD ( #157069 )
2022-01-27 19:37:36 -05:00
Sandro
27cccd4e49
Merge pull request #151363 from Stunkymonkey/doc-updateWalker
2022-01-27 14:06:36 +01:00
ajs124
3638ca8be6
Merge pull request #156001 from helsinki-systems/upd/tulip
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tulip: 5.2.1 -> 5.6.1
2022-01-26 23:33:44 +01:00
Felix Buehler
ed7bf9452c
treewide: remove *.upstream files from updateWalker
2022-01-26 21:46:07 +01:00
R. Ryantm
6b3bf39220
cwltool: 3.1.20220119140128 -> 3.1.20220124184855
2022-01-25 21:56:09 -05:00
R. Ryantm
f888e66ad4
cwltool: 3.1.20211107152837 -> 3.1.20220119140128
2022-01-21 09:09:34 -05:00
ajs124
479ca09609
tulip: 5.2.1 -> 5.6.1
2022-01-21 03:45:21 +01:00
Robert Schütz
d5cceedbd1
python,pythonPackages: make aliases
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Since aliases are disallowed in nixpkgs, this makes usage of Python 2
which is EOL more explicit.
2022-01-16 18:39:59 +00:00
Bobby Rong
cb3da55ede
Merge pull request #154988 from veprbl/pr/broken_gplates
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gplates: mark as broken on darwin
2022-01-15 13:24:14 +08:00
Bobby Rong
a6ed245599
Merge pull request #154989 from veprbl/pr/broken_graphia
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graphia: mark as broken on darwin
2022-01-15 13:23:31 +08:00
Fabian Affolter
49574fc9d5
Merge pull request #154934 from fabaff/fix-toil
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toil: 5.4.0 -> 5.6.0
2022-01-14 21:16:45 +01:00
Dmitry Kalinkin
2b9f8eb0a2
graphia: mark as broken on darwin
2022-01-14 03:38:54 -05:00
Dmitry Kalinkin
69d78f174a
gplates: mark as broken on darwin
2022-01-14 03:33:15 -05:00
Shamrock Lee
cc5ffb3de4
root: Explicit specify -Dtmva=ON
2022-01-14 14:19:33 +08:00
Shamrock Lee
336cc50b1f
root: add openblas and lapack into buildInputs for TMVA
2022-01-14 14:15:22 +08:00
Fabian Affolter
32003c3051
toil: 5.4.0 -> 5.6.0
2022-01-13 21:37:08 +01:00
Fabian Affolter
1a549598b4
cwltool: 3.1.20211104071347 -> 3.1.20211107152837
2022-01-12 18:00:43 +01:00
Fabian Affolter
b9c6bff4f0
nextinspace: 1.0.6 -> 2.0.3
2022-01-09 01:17:23 +01:00
Ben Siraphob
39a0a70d29
treewide: fix homepages with permanent redirect to https
2021-12-29 22:06:47 +07:00
Rasmus Thomsen
83e5da9238
bada-bib: init at 0.3.0
2021-12-28 12:40:39 +01:00
Dmitry Kalinkin
d5bdb7d39d
root: fix installation of bin/rootcint and bin/genreflex
2021-12-26 00:07:49 -05:00
Bobby Rong
bcaa1b4633
Merge pull request #149151 from Luflosi/update/boinc
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boinc: 7.14.2 -> 7.18.1
2021-12-18 21:32:22 +08:00
Oleksii Filonenko
a400948064
Merge pull request #149167 from r-ryantm/auto-update/rink
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rink: 0.6.1 -> 0.6.2
2021-12-13 14:40:57 +02:00
R. Ryantm
3112fe2ace
openmvg: 1.6 -> 2.0
2021-12-07 20:17:43 +00:00
R. Ryantm
5517f74759
rink: 0.6.1 -> 0.6.2
2021-12-06 23:57:17 +00:00
Luflosi
ca87168c6e
boinc: copy systemd service file to output
2021-12-06 23:56:06 +01:00
Luflosi
4e0d9003fc
boinc: 7.14.2 -> 7.18.1
2021-12-06 23:56:06 +01:00
Luflosi
a7be4f3840
boinc: add Luflosi as maintainer
2021-12-06 23:56:05 +01:00
Michael Raskin
65b2df8b45
golly: 3.3 -> 4.1
2021-12-06 16:27:09 +01:00
Bernardo Meurer
51694b0af4
root5: binutils 2.37 fix
...
Co-authored-by: TredwellGit <tredwell@tutanota.com>
2021-11-28 08:49:32 +00:00
Dmitry Kalinkin
a1b8eb4a30
Merge pull request #144870 from fabaff/fix-cwltool
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cwltool: 3.1.20210628163208 -> 3.1.20211104071347
2021-11-11 23:41:46 -05:00
Felix Buehler
b52ab3b712
pkgs/applications: rename name to pname&version part 2
2021-11-07 14:53:06 +01:00
Fabian Affolter
18b531b514
cwltool: 3.1.20210628163208 -> 3.1.20211104071347
2021-11-06 13:01:16 +01:00
R. Ryantm
5ba5ff1a84
cytoscape: 3.8.2 -> 3.9.0
2021-10-29 09:08:26 +00:00
Dmitry Kalinkin
49d19b7945
snakemake: 6.7.0 -> 6.10.0
2021-10-24 17:49:14 -04:00
Vladimir Korolev
72d4a1f13d
openmodelica: v1.17.0 -> v1.18.0, add balodja to openmodelica maintainers
2021-10-02 12:39:57 +03:00
Robert Schütz
98c8fc6fd0
gplates: 2.2.0 -> 2.3.0
2021-09-26 23:11:29 -07:00
Dmitry Kalinkin
84f408f206
Merge pull request #136016 from veprbl/pr/root_6_24_04
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root: 6.24.02 -> 6.24.06
2021-09-15 11:35:07 -04:00
Dmitry Kalinkin
0ec2acf51f
root: build with -Dimt=ON
2021-09-03 12:41:16 -04:00
Dmitry Kalinkin
95b2d74bc5
root: re-enable unvendored LLVM
2021-09-03 12:41:16 -04:00
Dmitry Kalinkin
aedfb59c87
root: 6.24.02 -> 6.24.06
2021-09-03 12:41:04 -04:00
Dmitry Kalinkin
0a312a356c
root5: fix for gcc10
2021-09-01 07:14:56 -04:00
Dmitry Kalinkin
b8c5c06aab
snakemake: 6.6.1 -> 6.7.0
2021-08-28 02:18:38 -04:00
Dmitry Kalinkin
e51edc1e64
Merge pull request #130903 from veprbl/pr/cwltool
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cwltool: init at 3.1.20210628163208
2021-08-08 11:15:33 -04:00
Ben Siraphob
0f34985134
Merge pull request #122828 from balodja/openmodelica
2021-07-25 09:24:25 +07:00
Vladimir Korolev
5c8561f11a
openmodelica: 1.9.3 -> 1.17.0 with lots of changes
...
Co-authored-by: Jaakko Luttinen <jaakko.luttinen@iki.fi>
Most of changes are:
* separate packages for different openmodelica components,
* qt4 -> qt5,
* patches to instruct the OMEdit wrapper with stdenv executables
location,
* adoption of #89731 and #109595 ,
* openblas -> blas, lapack according to #83888 ,
* parallel building,
* getting rid of spurious build phases,
* correct the license,
* cross-compilation,
* forcing compiler to clang++ according to OM build recommendations,
* drop of pangox_compat according to #75909 and #76412 ,
* better dependencies, and more.
2021-07-24 20:29:26 +03:00
Dmitry Kalinkin
3f24366cda
cwltool: init at 3.1.20210628163208
2021-07-21 22:11:17 -04:00
Sandro
d06f7e07a6
Merge pull request #130925 from SuperSandro2000/python-aliases
2021-07-22 03:21:11 +02:00
Sandro Jäckel
b4099137b1
pythonPackages: deprecate ConfigArgParse alias
2021-07-21 13:32:54 +02:00
Sandro
aee461ddb4
toil: update homepage
2021-07-21 13:28:37 +02:00
Dmitry Kalinkin
866fe59150
toil: init at 5.4.0
2021-07-20 22:18:08 -04:00
Dmitry Kalinkin
3a79b1fece
snakemake: 6.5.3 -> 6.6.1
2021-07-19 16:22:36 -04:00
Dmitry Kalinkin
a93f2af20b
snakemake: add missing optional dependenices
...
These are needed to generate reports
2021-07-19 16:19:27 -04:00
Millian Poquet
c6f34aeaef
simgrid: compile tests in parallel
2021-07-19 14:05:17 +02:00
Millian Poquet
c4ec6ffb78
simgrid: fix paths in smpicc/smpicxx
2021-07-19 14:04:57 +02:00
Millian Poquet
33f915f241
simgrid: propagate boost
...
Since SimGrid include files directly include boost files,
most SimGrid users need boost as well.
2021-07-19 14:03:50 +02:00
Millian Poquet
2d05c2d535
simgrid: 3.27 -> 3.28
2021-07-19 14:01:30 +02:00
Felix Buehler
82cb33a0ae
treewide: remove meta.version
2021-07-18 00:07:38 +02:00
Dmitry Kalinkin
1cbb9c64d1
root,root5: apply nixpkgs-fmt
2021-07-14 16:23:09 -04:00
Dmitry Kalinkin
62ab958fb0
root: 6.24.00 -> 6.24.02
2021-07-14 14:58:15 -04:00
Dmitry Kalinkin
45bed6d99f
snakemake: 6.5.0 -> 6.5.3
2021-07-11 10:40:09 -04:00
Andrew Childs
55dcd99859
root: use pure CoreSymbolication on Darwin
...
The current build works by linking against CoreSymbolication in
/System/Library/PrivateFrameworks. This is impure and doesn't work in
newer versions of macOS.
See https://github.com/NixOS/nixpkgs/issues/128576
2021-06-29 11:00:05 +09:00
Dmitry Kalinkin
e3678ae8a6
snakemake: 6.0.5 -> 6.5.0
2021-06-24 11:36:26 -04:00
Sandro
47480918a5
Merge pull request #125802 from yipengsun/root-6-24-00
2021-06-09 15:42:05 +02:00
Yipeng Sun
ffced8d681
root: 6.22.08 -> 6.24.00
...
We switched to the bundled llvm-clang combo because to use the llvm
provided in nixpkgs, clang also needs to be patched and built
externally, which is too much trouble.
2021-06-09 14:06:13 +02:00
Sandro
c037394f5f
Merge pull request #117606 from bgamari/graphia
2021-06-05 16:31:10 +02:00
Ben Gamari
dcfaa98677
graphia: init at 2.2
...
Graphia is a relatively new tool for graph visualisation and analysis,
in the same vain as gephi.
2021-06-02 09:07:32 -04:00
Sandro Jäckel
d6ff646b3f
pythonPackages.smart_open: rename to smart-open
2021-05-22 15:02:50 -07:00
Stéphan Kochen
7e9451ffb3
rink: fix darwin build ( #123501 )
2021-05-18 10:34:25 -04:00
Jonathan Ringer
1d85caaa26
root: fix build
2021-05-08 01:29:18 -07:00
V
5a835e6e92
rink: 0.6.0 -> 0.6.1
2021-05-01 10:46:51 +02:00
Fabian Affolter
e4149e6e0b
rink: specify license
2021-04-11 23:18:32 +02:00
R. RyanTM
12518ff683
rink: 0.5.1 -> 0.6.0
2021-04-11 14:49:45 +00:00
Dmitry Kalinkin
1d93243467
root: 6.22.06 -> 6.22.08
2021-04-06 02:41:06 -04:00
Sandro Jäckel
3453b89f4b
lzma: deprecate alias
2021-04-04 19:49:52 +02:00
Millian Poquet
99a5de6ebc
simgrid: 3.26 -> 3.27
2021-03-29 21:20:27 +02:00
Dmitry Kalinkin
8887f4655e
snakemake: 5.28.0 -> 6.0.5
2021-03-26 18:32:26 -04:00
Ben Siraphob
e03c068af5
treewide: makeWrapper buildInputs to nativeBuildInputs
2021-02-19 20:09:16 +07:00
Sandro Jäckel
6ad10c3bcd
treewide: Remove doBuild cause it does not exist
2021-02-02 14:46:06 +01:00
Pavol Rusnak
a6ce00c50c
treewide: remove stdenv where not needed
2021-01-25 18:31:47 +01:00
Jonathan Ringer
9bb3fccb5b
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
...
continuation of #109595
pkgconfig was aliased in 2018, however, it remained in
all-packages.nix due to its wide usage. This cleans
up the remaining references to pkgs.pkgsconfig and
moves the entry to aliases.nix.
python3Packages.pkgconfig remained unchanged because
it's the canonical name of the upstream package
on pypi.
2021-01-19 01:16:25 -08:00
Ben Siraphob
badf51221d
treewide: stdenv.lib -> lib
2021-01-16 17:58:11 +07:00
Profpatsch
4a7f99d55d
treewide: with stdenv.lib; in meta -> with lib;
...
Part of: https://github.com/NixOS/nixpkgs/issues/108938
meta = with stdenv.lib;
is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.
This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.
The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00
Frederik Rietdijk
b20838eb4a
Merge staging-next into staging
2021-01-04 20:51:32 +01:00
Sandro
6ac4c2d1f6
Merge pull request #107962 from flyfloh/colmap-36
2021-01-04 14:25:21 +01:00
Ben Siraphob
3ae5e6ce03
treewide: remove enableParallelBuilding = true if using cmake
2021-01-03 18:37:40 +07:00
github-actions[bot]
0eb369d907
Merge staging-next into staging
2021-01-01 18:39:12 +00:00
Dmitry Kalinkin
8bee208bf8
Merge pull request #107335 from veprbl/pr/root_6_20_08
...
root: 6.18.04 -> 6.22.06, don't build vendored LLVM
2021-01-01 12:28:37 -05:00
Ben Siraphob
b04fc593e7
treewide: cmake buildInputs to nativeBuildInputs, minor cleanups
2021-01-01 11:52:33 +07:00
Florian Pester
b740afa546
colmap: 3.5 -> 3.6
2020-12-31 09:56:07 +01:00
Florian Pester
75eef96f08
colmapWithCuda: fix build
2020-12-31 09:56:07 +01:00
Dmitry Kalinkin
a30bff21e8
root: use llvm_5 from nixpkgs
2020-12-21 18:24:25 -05:00
