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snakemake: 6.10.0 -> 6.15.5 (#159026)

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Fetch from GitHub rather than PyPI so tests are included.
This commit is contained in:
Daniel Wheeler 2022-02-17 18:06:23 -05:00 committed by GitHub
parent 7947d48463
commit 4befe7a89f
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1 changed files with 25 additions and 6 deletions
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31
pkgs/applications/science/misc/snakemake/default.nix
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@ -1,8 +1,8 @@
{ lib, python3Packages }:
{ lib, python3Packages, fetchFromGitHub }:
python3Packages.buildPythonApplication rec {
pname = "snakemake";
version = "6.10.0";
version = "6.15.5";
propagatedBuildInputs = with python3Packages; [
appdirs
@ -29,12 +29,31 @@ python3Packages.buildPythonApplication rec {
wrapt
];
src = python3Packages.fetchPypi {
inherit pname version;
sha256 = "199a86c8d1fcfdb88c4271a1507b0ab371a15bc407f2dad9b0ab8c43438adff8";
src = fetchFromGitHub {
owner = "snakemake";
repo = pname;
rev = "v${version}";
sha256 = "sha256-i8C7gPLzUzSxNH9xwpr+fUKI1SvpYFsFBlspS74LoWU=";
};
doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json
# See
# https://github.com/snakemake/snakemake/blob/main/.github/workflows/main.yml#L99
# for the current basic test suite. Tibanna and Tes require extra
# setup.
checkInputs = with python3Packages; [
pandas
pytestCheckHook
requests-mock
];
disabledTestPaths = [
"tests/test_tes.py"
"tests/test_tibanna.py"
"tests/test_linting.py"
];
pythonImportsCheck = [ "snakemake" ];
meta = with lib; {
homepage = "https://snakemake.github.io";