R. Ryantm
7a5b52ff26
snakemake: 7.8.5 -> 7.9.0
2022-07-21 15:24:14 +00:00
Bobby Rong
b536142220
Merge pull request #181946 from Luflosi/update/boinc
...
boinc: 7.20.1 -> 7.20.2
2022-07-21 20:01:43 +08:00
Dmitry Kalinkin
3518b4ac5a
Merge pull request #182037 from veprbl/pr/root_6_26_04
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root: 6.24.06 -> 6.26.04
2022-07-20 17:50:18 -04:00
Artturin
6b8c65acd9
treewide: fix fallout from 'cmake/setup-hook.sh: Don't skip build-RPATH'
2022-07-19 17:47:13 +03:00
Dmitry Kalinkin
b3df13e2d7
root: 6.24.06 -> 6.26.04
2022-07-18 23:14:15 -04:00
Luflosi
bf27ab825e
boinc: 7.20.1 -> 7.20.2
...
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.20%2F7.20.2
2022-07-18 14:33:23 +02:00
Vladimír Čunát
0879ac5da6
Merge branch 'master' into staging-next
2022-07-16 20:07:05 +02:00
Mario Rodas
279e1daf20
Merge pull request #180821 from r-ryantm/auto-update/nextinspace
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nextinspace: 2.0.3 -> 2.0.5
2022-07-16 09:46:22 -05:00
Artturin
a584822577
treewide: fix fallout from 'cmake/setup-hook.sh: Don't skip build-RPATH'
...
f7414e2
2022-07-15 02:50:09 +03:00
Vladimír Čunát
8169a7fce0
Merge branch 'master' into staging-next
2022-07-13 09:57:41 +02:00
Jonas Heinrich
2349dd5cb2
graphia: 2.2 -> 3.0
2022-07-12 10:01:03 -04:00
github-actions[bot]
5f2ff17a45
Merge master into staging-next
2022-07-11 18:01:16 +00:00
Thomas Tuegel
e1e0d5d513
Merge pull request #108496 from knedlsepp/cmake-rpath
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cmake/setup-hook.sh: Don't skip build-RPATH
2022-07-11 10:18:47 -05:00
Claudio Bley
16a1651a4a
gephi: 0.9.2 -> 0.9.6
...
Gephi now requies Java 11+.
2022-07-11 16:45:30 +02:00
Bobby Rong
06e537ad60
bada-bib: add missing libadwaita and gtksourceview5 dependency
2022-07-11 13:46:57 +08:00
R. Ryantm
58d35e01aa
nextinspace: 2.0.3 -> 2.0.5
2022-07-09 07:19:07 +00:00
R. Ryantm
4975868d54
bada-bib: 0.6.2 -> 0.7.2
2022-07-06 00:52:29 +00:00
R. RyanTM
200d8c500a
snakemake: 7.8.3 -> 7.8.5 ( #179874 )
2022-07-04 12:24:26 -04:00
Josef Kemetmüller
bcd7045998
treewide: Remove now-unneeded LD_LIBRARY_PATH in cmake derivations
...
Since the setting DCMAKE_SKIP_BUILD_RPATH was disabled, we can now run
the checkPhase of cmake derivations without having to tweak the
LD_LIBRARY_PATH anymore.
2022-07-04 03:49:01 +03:00
Luflosi
6eea86625e
boinc: 7.20.0 -> 7.20.1
...
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.20%2F7.20.1
2022-07-02 15:56:06 +02:00
Lassulus
c58d141dcc
Merge pull request #177268 from Luflosi/update/boinc
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boinc: 7.18.1 -> 7.20.0
2022-06-23 21:14:33 +02:00
Robert Scott
070028a960
fahcontrol: remove autoPatchelfHook argument
...
this is confusing as it is not used - the package .deb only contains
python (and bash)
2022-06-23 18:38:23 +01:00
Robert Scott
466c2e342a
treewide/applications: add sourceType binaryNativeCode for many packages
2022-06-23 18:38:19 +01:00
R. Ryantm
671aeb2769
snakemake: 7.8.2 -> 7.8.3
2022-06-21 19:01:53 +00:00
Luflosi
0045581c23
boinc: 7.18.1 -> 7.20.0
...
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.20%2F7.20.0
2022-06-11 11:26:45 +02:00
R. Ryantm
acf23020f0
snakemake: 7.8.1 -> 7.8.2
2022-06-09 19:49:56 +00:00
Robert Scott
3b6bc4b69c
treewide: set sourceProvenance for packages containing downloaded jars
...
these are the easily identifiable cases and will not be comprehensive
2022-06-04 19:47:57 +01:00
R. Ryantm
e9fb739e59
snakemake: 7.8.0 -> 7.8.1
2022-06-02 01:20:40 +00:00
R. RyanTM
7a54d237e0
snakemake: 7.7.0 -> 7.8.0 ( #174592 )
2022-05-30 10:51:36 -04:00
Rick van Schijndel
433701147a
treewide: pkgs/applications: mark broken for aarch64-linux
2022-05-30 13:42:58 +02:00
Rick van Schijndel
90869787c5
boinc: mark broken for aarch64
2022-05-29 10:56:03 +02:00
Fabian Affolter
44b8ec5ccb
Merge pull request #173416 from r-ryantm/auto-update/snakemake
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snakemake: 7.6.2 -> 7.7.0
2022-05-17 20:39:48 +02:00
R. Ryantm
a52b64015a
snakemake: 7.6.2 -> 7.7.0
2022-05-17 16:18:18 +00:00
Dmitry Kalinkin
fdf0806386
root5: fix build with recent gcc
2022-05-16 11:53:42 -04:00
R. Ryantm
5b55f851ac
snakemake: 7.6.1 -> 7.6.2
2022-05-07 16:16:09 +00:00
R. Ryantm
166b1378fe
snakemake: 7.5.0 -> 7.6.1
2022-05-04 16:06:44 +00:00
Fabian Affolter
8b176291d7
snakemake: 6.15.5 -> 7.5.0
2022-05-01 13:02:10 +02:00
Serge K
1248ea16e1
colmap: fix for cuda11.6/gcc11 ( #169623 )
...
* colmap: force nvcc std=c++14 after gcc11 bump
* colmap: optional -> optionals
* colmap: sha256 -> hash
* colmapWithCuda: force CUDA_ENABLED=ON safeguard
* colmapWithCuda: add opengl runpath
2022-04-27 16:09:30 -07:00
Ryan Mulligan
f05a748058
Merge pull request #169246 from r-ryantm/auto-update/bada-bib
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bada-bib: 0.6.1 -> 0.6.2
2022-04-24 13:58:11 -07:00
veprbl
2511bad8aa
Merge pull request #168973 from veprbl/pr/root5_glibc_fix
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root5: fix for glibc
2022-04-19 14:56:09 -04:00
R. Ryantm
9919952421
bada-bib: 0.6.1 -> 0.6.2
2022-04-19 00:53:01 +00:00
Dmitry Kalinkin
81f9e28844
root5: fix for glibc
2022-04-16 17:20:16 -04:00
Fabián Heredia Montiel
5275050ab0
fityk: add -std=c++11 flag for gcc11 and later
2022-04-16 11:11:46 -05:00
github-actions[bot]
bf63dd7434
Merge staging-next into staging
2022-04-10 18:01:38 +00:00
Lassulus
973fa1917c
Merge pull request #162300 from r-ryantm/auto-update/cwltool
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cwltool: 3.1.20220221074232 -> 3.1.20220224085855
2022-04-10 13:37:54 +01:00
Martin Weinelt
bf1914e12a
Merge remote-tracking branch 'origin/staging-next' into staging
2022-04-05 04:05:02 +02:00
Ryan Mulligan
b56cf0ed6a
Merge pull request #167069 from r-ryantm/auto-update/bada-bib
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bada-bib: 0.6.0 -> 0.6.1
2022-04-04 13:51:15 -07:00
Martin Weinelt
f95a3d1140
Merge remote-tracking branch 'origin/staging-next' into staging
2022-04-04 00:46:25 +02:00
R. Ryantm
2a5b81d50f
bada-bib: 0.6.0 -> 0.6.1
2022-04-03 19:11:54 +00:00
ajs124
f9ad6fb744
openmvs: remove after being marked broken for over two years
...
It was marked in commit 796050fedd
2022-04-03 16:14:19 +01:00
github-actions[bot]
9aa014c46a
Merge staging-next into staging
2022-03-31 12:02:10 +00:00
R. Ryantm
53dff2f7c8
rink: 0.6.2 -> 0.6.3
2022-03-28 18:13:37 +00:00
github-actions[bot]
8357b101a5
Merge staging-next into staging
2022-03-25 12:02:05 +00:00
davidak
6ea8d5ee71
Merge pull request #165297 from Stunkymonkey/treewide-pname-version-17
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treewide: rename name to pname&version
2022-03-24 16:38:33 +01:00
Doron Behar
4a02c56a7d
Merge pull request #164746 from ncfavier/makeWrapper-chdir
2022-03-24 13:51:27 +02:00
Felix Buehler
3bc5196252
treewide: rename name to pname&version
2022-03-23 22:55:50 +01:00
Millian Poquet
9ff032c291
simgrid: 3.30 -> 3.31
...
- addition of the optional eigen dependency, used by a new simulation
model (bmf) that looks very promising to take interference phenomena
into account while remaining coarse-grained.
- enabled the new dependency by default as I think this is interesting
for most users.
2022-03-22 14:52:22 +01:00
Armeen Mahdian
858e03cf1f
golly-beta: remove
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Golly is more up to date
2022-03-21 07:08:53 -05:00
Naïm Favier
9160044f5f
treewide/makeWrapper: replace --run cd with --chdir
...
Lay the groundwork for switching to binary wrappers by reducing uses
of `--run` (which is not supported by `makeBinaryWrapper`).
2022-03-19 09:46:31 +01:00
Rasmus Thomsen
69895c6248
bada-bib: 0.5.1 -> 0.6.0
2022-03-15 12:50:26 +01:00
Dmitry Kalinkin
149d68268d
root: fix ROOTConfig.cmake.in patching
2022-03-04 21:04:19 -05:00
R. Ryantm
de0ff65232
cwltool: 3.1.20220221074232 -> 3.1.20220224085855
2022-03-01 03:46:50 +00:00
K900
cb2cfba6f7
treewide: switch all desktop file generators to new API
...
Notably:
- remove explicit arguments that match the defaults
- convert everything to the right Nix types
2022-02-25 13:40:38 -08:00
R. Ryantm
d6a24fc108
cwltool: 3.1.20220217222804 -> 3.1.20220221074232
2022-02-24 15:52:49 -05:00
Bobby Rong
93883402a4
Merge pull request #160594 from Cogitri/bada-bib
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bada-bib: 0.4.1 -> 0.5.1
2022-02-22 12:10:40 +08:00
Rasmus Thomsen
87c1d9f92c
bada-bib: 0.4.1 -> 0.5.1
2022-02-21 16:33:50 +01:00
R. Ryantm
c35aa0a0f3
cwltool: 3.1.20220217190813 -> 3.1.20220217222804
2022-02-21 01:31:33 -05:00
Millian Poquet
bc2604732e
simgrid: mark as broken on darwin
2022-02-19 10:05:17 +01:00
Millian Poquet
3f804f68bc
simgrid: 3.28 -> 3.30 + python + clean
...
- use latest SimGrid release
- enable the python binding (in new output "python")
- reviews from PR 141040 have been applied
2022-02-19 10:05:12 +01:00
R. Ryantm
b715fcd9d9
cwltool: 3.1.20220210171524 -> 3.1.20220217190813
2022-02-18 00:36:37 -05:00
R. RyanTM
ac1c96ecec
colmap: 3.6 -> 3.7
...
* colmap: 3.6 -> 3.7 (#159198 )
* colmap: license is BSD-3-Clause
Co-authored-by: Renaud <c0bw3b@users.noreply.github.com>
2022-02-18 00:29:14 +01:00
Daniel Wheeler
4befe7a89f
snakemake: 6.10.0 -> 6.15.5 ( #159026 )
...
Fetch from GitHub rather than PyPI so tests are included.
2022-02-17 18:06:23 -05:00
Zhong Jianxin
e8f3914985
treewide: Replace transfig with fig2dev
...
Reasons:
- transfig never get upstream update since it was added to nixpkgs 2006,
according to [fig2dev Debian changelog][1], upstream maintainership
was taken over at 2016, and renamed to fig2dev.
- [Debian][2], [ArchLinux][3], [HomeBrew][4] all use fig2dev to replace
transfig.
- transfig builds [failed][5] on aarch64-darwin, fig2dev builds fine.
- One less package to maintain.
[1]: https://salsa.debian.org/debian/fig2dev/-/blob/debian/1%253.2.6_beta-1/debian/changelog
[2]: https://packages.debian.org/bullseye/transfig
[3]: https://archlinux.org/packages/community/x86_64/fig2dev/
[4]: https://formulae.brew.sh/formula/fig2dev
[5]: https://hydra.nixos.org/build/163404782/nixlog/2
2022-02-15 10:13:56 +08:00
R. Ryantm
2220d35562
bada-bib: 0.3.0 -> 0.4.1
2022-02-12 22:22:46 -08:00
R. Ryantm
24b505484b
cytoscape: 3.9.0 -> 3.9.1
2022-02-12 21:13:11 -08:00
R. Ryantm
1631ffae8d
cwltool: 3.1.20220204090313 -> 3.1.20220210171524
2022-02-11 12:44:06 -05:00
R. RyanTM
1bfc1730e1
cwltool: 3.1.20220202173120 -> 3.1.20220204090313 ( #158272 )
2022-02-05 15:14:21 -05:00
Sandro
63a6539b76
Merge pull request #157198 from afontaine/afontaine/correct-fah-shortcuts
2022-02-04 18:26:20 +01:00
R. Ryantm
af3af2df32
cwltool: 3.1.20220124184855 -> 3.1.20220202173120
2022-02-03 20:06:12 -05:00
markuskowa
65bc2de0ef
Merge pull request #152447 from Cogitri/bada-bib
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bada-bib: init at 0.3.0
2022-02-01 22:26:26 +01:00
Robert Schütz
a13fe11c59
sasview: 4.2.0 -> 5.0.4
2022-01-30 20:47:10 +00:00
Andrew Fontaine
3c0680b783
fahviewer: fix variable substitution for shortcut
...
Because single quotes are used in the sed command, the application
shortcut had the literal $out instead of the package path.
2022-01-28 16:47:24 -05:00
Andrew Fontaine
ba785adb28
fahcontrol: fix variable substitution for shortcut
...
Because single quotes are used in the sed command, the application
shortcut had the literal $out instead of the package path.
2022-01-28 16:46:52 -05:00
Yipeng Sun
54cbee8d97
root: tweak wrapping flags for auxiliary programs, avoid forcing CMAKE_CXX_STANDARD ( #157069 )
2022-01-27 19:37:36 -05:00
Sandro
27cccd4e49
Merge pull request #151363 from Stunkymonkey/doc-updateWalker
2022-01-27 14:06:36 +01:00
ajs124
3638ca8be6
Merge pull request #156001 from helsinki-systems/upd/tulip
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tulip: 5.2.1 -> 5.6.1
2022-01-26 23:33:44 +01:00
Felix Buehler
ed7bf9452c
treewide: remove *.upstream files from updateWalker
2022-01-26 21:46:07 +01:00
R. Ryantm
6b3bf39220
cwltool: 3.1.20220119140128 -> 3.1.20220124184855
2022-01-25 21:56:09 -05:00
R. Ryantm
f888e66ad4
cwltool: 3.1.20211107152837 -> 3.1.20220119140128
2022-01-21 09:09:34 -05:00
ajs124
479ca09609
tulip: 5.2.1 -> 5.6.1
2022-01-21 03:45:21 +01:00
Robert Schütz
d5cceedbd1
python,pythonPackages: make aliases
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Since aliases are disallowed in nixpkgs, this makes usage of Python 2
which is EOL more explicit.
2022-01-16 18:39:59 +00:00
Bobby Rong
cb3da55ede
Merge pull request #154988 from veprbl/pr/broken_gplates
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gplates: mark as broken on darwin
2022-01-15 13:24:14 +08:00
Bobby Rong
a6ed245599
Merge pull request #154989 from veprbl/pr/broken_graphia
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graphia: mark as broken on darwin
2022-01-15 13:23:31 +08:00
Fabian Affolter
49574fc9d5
Merge pull request #154934 from fabaff/fix-toil
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toil: 5.4.0 -> 5.6.0
2022-01-14 21:16:45 +01:00
Dmitry Kalinkin
2b9f8eb0a2
graphia: mark as broken on darwin
2022-01-14 03:38:54 -05:00
Dmitry Kalinkin
69d78f174a
gplates: mark as broken on darwin
2022-01-14 03:33:15 -05:00
Shamrock Lee
cc5ffb3de4
root: Explicit specify -Dtmva=ON
2022-01-14 14:19:33 +08:00
Shamrock Lee
336cc50b1f
root: add openblas and lapack into buildInputs for TMVA
2022-01-14 14:15:22 +08:00
Fabian Affolter
32003c3051
toil: 5.4.0 -> 5.6.0
2022-01-13 21:37:08 +01:00
Fabian Affolter
1a549598b4
cwltool: 3.1.20211104071347 -> 3.1.20211107152837
2022-01-12 18:00:43 +01:00
Fabian Affolter
b9c6bff4f0
nextinspace: 1.0.6 -> 2.0.3
2022-01-09 01:17:23 +01:00
Ben Siraphob
39a0a70d29
treewide: fix homepages with permanent redirect to https
2021-12-29 22:06:47 +07:00
Rasmus Thomsen
83e5da9238
bada-bib: init at 0.3.0
2021-12-28 12:40:39 +01:00
Dmitry Kalinkin
d5bdb7d39d
root: fix installation of bin/rootcint and bin/genreflex
2021-12-26 00:07:49 -05:00
Bobby Rong
bcaa1b4633
Merge pull request #149151 from Luflosi/update/boinc
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boinc: 7.14.2 -> 7.18.1
2021-12-18 21:32:22 +08:00
Oleksii Filonenko
a400948064
Merge pull request #149167 from r-ryantm/auto-update/rink
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rink: 0.6.1 -> 0.6.2
2021-12-13 14:40:57 +02:00
R. Ryantm
3112fe2ace
openmvg: 1.6 -> 2.0
2021-12-07 20:17:43 +00:00
R. Ryantm
5517f74759
rink: 0.6.1 -> 0.6.2
2021-12-06 23:57:17 +00:00
Luflosi
ca87168c6e
boinc: copy systemd service file to output
2021-12-06 23:56:06 +01:00
Luflosi
4e0d9003fc
boinc: 7.14.2 -> 7.18.1
2021-12-06 23:56:06 +01:00
Luflosi
a7be4f3840
boinc: add Luflosi as maintainer
2021-12-06 23:56:05 +01:00
Michael Raskin
65b2df8b45
golly: 3.3 -> 4.1
2021-12-06 16:27:09 +01:00
Bernardo Meurer
51694b0af4
root5: binutils 2.37 fix
...
Co-authored-by: TredwellGit <tredwell@tutanota.com>
2021-11-28 08:49:32 +00:00
Dmitry Kalinkin
a1b8eb4a30
Merge pull request #144870 from fabaff/fix-cwltool
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cwltool: 3.1.20210628163208 -> 3.1.20211104071347
2021-11-11 23:41:46 -05:00
Felix Buehler
b52ab3b712
pkgs/applications: rename name to pname&version part 2
2021-11-07 14:53:06 +01:00
Fabian Affolter
18b531b514
cwltool: 3.1.20210628163208 -> 3.1.20211104071347
2021-11-06 13:01:16 +01:00
R. Ryantm
5ba5ff1a84
cytoscape: 3.8.2 -> 3.9.0
2021-10-29 09:08:26 +00:00
Dmitry Kalinkin
49d19b7945
snakemake: 6.7.0 -> 6.10.0
2021-10-24 17:49:14 -04:00
Vladimir Korolev
72d4a1f13d
openmodelica: v1.17.0 -> v1.18.0, add balodja to openmodelica maintainers
2021-10-02 12:39:57 +03:00
Robert Schütz
98c8fc6fd0
gplates: 2.2.0 -> 2.3.0
2021-09-26 23:11:29 -07:00
Dmitry Kalinkin
84f408f206
Merge pull request #136016 from veprbl/pr/root_6_24_04
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root: 6.24.02 -> 6.24.06
2021-09-15 11:35:07 -04:00
Dmitry Kalinkin
0ec2acf51f
root: build with -Dimt=ON
2021-09-03 12:41:16 -04:00
Dmitry Kalinkin
95b2d74bc5
root: re-enable unvendored LLVM
2021-09-03 12:41:16 -04:00
Dmitry Kalinkin
aedfb59c87
root: 6.24.02 -> 6.24.06
2021-09-03 12:41:04 -04:00
Dmitry Kalinkin
0a312a356c
root5: fix for gcc10
2021-09-01 07:14:56 -04:00
Dmitry Kalinkin
b8c5c06aab
snakemake: 6.6.1 -> 6.7.0
2021-08-28 02:18:38 -04:00
Dmitry Kalinkin
e51edc1e64
Merge pull request #130903 from veprbl/pr/cwltool
...
cwltool: init at 3.1.20210628163208
2021-08-08 11:15:33 -04:00
Ben Siraphob
0f34985134
Merge pull request #122828 from balodja/openmodelica
2021-07-25 09:24:25 +07:00
Vladimir Korolev
5c8561f11a
openmodelica: 1.9.3 -> 1.17.0 with lots of changes
...
Co-authored-by: Jaakko Luttinen <jaakko.luttinen@iki.fi>
Most of changes are:
* separate packages for different openmodelica components,
* qt4 -> qt5,
* patches to instruct the OMEdit wrapper with stdenv executables
location,
* adoption of #89731 and #109595 ,
* openblas -> blas, lapack according to #83888 ,
* parallel building,
* getting rid of spurious build phases,
* correct the license,
* cross-compilation,
* forcing compiler to clang++ according to OM build recommendations,
* drop of pangox_compat according to #75909 and #76412 ,
* better dependencies, and more.
2021-07-24 20:29:26 +03:00
Dmitry Kalinkin
3f24366cda
cwltool: init at 3.1.20210628163208
2021-07-21 22:11:17 -04:00
Sandro
d06f7e07a6
Merge pull request #130925 from SuperSandro2000/python-aliases
2021-07-22 03:21:11 +02:00
Sandro Jäckel
b4099137b1
pythonPackages: deprecate ConfigArgParse alias
2021-07-21 13:32:54 +02:00
Sandro
aee461ddb4
toil: update homepage
2021-07-21 13:28:37 +02:00
Dmitry Kalinkin
866fe59150
toil: init at 5.4.0
2021-07-20 22:18:08 -04:00
Dmitry Kalinkin
3a79b1fece
snakemake: 6.5.3 -> 6.6.1
2021-07-19 16:22:36 -04:00
Dmitry Kalinkin
a93f2af20b
snakemake: add missing optional dependenices
...
These are needed to generate reports
2021-07-19 16:19:27 -04:00
Millian Poquet
c6f34aeaef
simgrid: compile tests in parallel
2021-07-19 14:05:17 +02:00
Millian Poquet
c4ec6ffb78
simgrid: fix paths in smpicc/smpicxx
2021-07-19 14:04:57 +02:00
Millian Poquet
33f915f241
simgrid: propagate boost
...
Since SimGrid include files directly include boost files,
most SimGrid users need boost as well.
2021-07-19 14:03:50 +02:00
Millian Poquet
2d05c2d535
simgrid: 3.27 -> 3.28
2021-07-19 14:01:30 +02:00
Felix Buehler
82cb33a0ae
treewide: remove meta.version
2021-07-18 00:07:38 +02:00
Dmitry Kalinkin
1cbb9c64d1
root,root5: apply nixpkgs-fmt
2021-07-14 16:23:09 -04:00
Dmitry Kalinkin
62ab958fb0
root: 6.24.00 -> 6.24.02
2021-07-14 14:58:15 -04:00
Dmitry Kalinkin
45bed6d99f
snakemake: 6.5.0 -> 6.5.3
2021-07-11 10:40:09 -04:00
Andrew Childs
55dcd99859
root: use pure CoreSymbolication on Darwin
...
The current build works by linking against CoreSymbolication in
/System/Library/PrivateFrameworks. This is impure and doesn't work in
newer versions of macOS.
See https://github.com/NixOS/nixpkgs/issues/128576
2021-06-29 11:00:05 +09:00
Dmitry Kalinkin
e3678ae8a6
snakemake: 6.0.5 -> 6.5.0
2021-06-24 11:36:26 -04:00
Sandro
47480918a5
Merge pull request #125802 from yipengsun/root-6-24-00
2021-06-09 15:42:05 +02:00
Yipeng Sun
ffced8d681
root: 6.22.08 -> 6.24.00
...
We switched to the bundled llvm-clang combo because to use the llvm
provided in nixpkgs, clang also needs to be patched and built
externally, which is too much trouble.
2021-06-09 14:06:13 +02:00
Sandro
c037394f5f
Merge pull request #117606 from bgamari/graphia
2021-06-05 16:31:10 +02:00
Ben Gamari
dcfaa98677
graphia: init at 2.2
...
Graphia is a relatively new tool for graph visualisation and analysis,
in the same vain as gephi.
2021-06-02 09:07:32 -04:00
Sandro Jäckel
d6ff646b3f
pythonPackages.smart_open: rename to smart-open
2021-05-22 15:02:50 -07:00
Stéphan Kochen
7e9451ffb3
rink: fix darwin build ( #123501 )
2021-05-18 10:34:25 -04:00
Jonathan Ringer
1d85caaa26
root: fix build
2021-05-08 01:29:18 -07:00
V
5a835e6e92
rink: 0.6.0 -> 0.6.1
2021-05-01 10:46:51 +02:00
Fabian Affolter
e4149e6e0b
rink: specify license
2021-04-11 23:18:32 +02:00
R. RyanTM
12518ff683
rink: 0.5.1 -> 0.6.0
2021-04-11 14:49:45 +00:00
Dmitry Kalinkin
1d93243467
root: 6.22.06 -> 6.22.08
2021-04-06 02:41:06 -04:00
Sandro Jäckel
3453b89f4b
lzma: deprecate alias
2021-04-04 19:49:52 +02:00
Millian Poquet
99a5de6ebc
simgrid: 3.26 -> 3.27
2021-03-29 21:20:27 +02:00
Dmitry Kalinkin
8887f4655e
snakemake: 5.28.0 -> 6.0.5
2021-03-26 18:32:26 -04:00
Ben Siraphob
e03c068af5
treewide: makeWrapper buildInputs to nativeBuildInputs
2021-02-19 20:09:16 +07:00
Sandro Jäckel
6ad10c3bcd
treewide: Remove doBuild cause it does not exist
2021-02-02 14:46:06 +01:00
Pavol Rusnak
a6ce00c50c
treewide: remove stdenv where not needed
2021-01-25 18:31:47 +01:00
Jonathan Ringer
9bb3fccb5b
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
...
continuation of #109595
pkgconfig was aliased in 2018, however, it remained in
all-packages.nix due to its wide usage. This cleans
up the remaining references to pkgs.pkgsconfig and
moves the entry to aliases.nix.
python3Packages.pkgconfig remained unchanged because
it's the canonical name of the upstream package
on pypi.
2021-01-19 01:16:25 -08:00
Ben Siraphob
badf51221d
treewide: stdenv.lib -> lib
2021-01-16 17:58:11 +07:00
Profpatsch
4a7f99d55d
treewide: with stdenv.lib; in meta -> with lib;
...
Part of: https://github.com/NixOS/nixpkgs/issues/108938
meta = with stdenv.lib;
is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.
This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.
The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00
Frederik Rietdijk
b20838eb4a
Merge staging-next into staging
2021-01-04 20:51:32 +01:00
Sandro
6ac4c2d1f6
Merge pull request #107962 from flyfloh/colmap-36
2021-01-04 14:25:21 +01:00
Ben Siraphob
3ae5e6ce03
treewide: remove enableParallelBuilding = true if using cmake
2021-01-03 18:37:40 +07:00
github-actions[bot]
0eb369d907
Merge staging-next into staging
2021-01-01 18:39:12 +00:00
Dmitry Kalinkin
8bee208bf8
Merge pull request #107335 from veprbl/pr/root_6_20_08
...
root: 6.18.04 -> 6.22.06, don't build vendored LLVM
2021-01-01 12:28:37 -05:00
Ben Siraphob
b04fc593e7
treewide: cmake buildInputs to nativeBuildInputs, minor cleanups
2021-01-01 11:52:33 +07:00
Florian Pester
b740afa546
colmap: 3.5 -> 3.6
2020-12-31 09:56:07 +01:00
Florian Pester
75eef96f08
colmapWithCuda: fix build
2020-12-31 09:56:07 +01:00
Dmitry Kalinkin
a30bff21e8
root: use llvm_5 from nixpkgs
2020-12-21 18:24:25 -05:00
Dmitry Kalinkin
b7e70092c5
root: 6.20.08 -> 6.22.06
2020-12-21 16:43:09 -05:00
Dmitry Kalinkin
7d6e0d5324
root: 6.18.04 -> 6.20.08
2020-12-20 23:49:54 -05:00
Millian Poquet
15ab96d5a7
simgrid: 3.25 -> 3.26
2020-12-19 14:03:33 +01:00
Sandro
b2219a326b
Merge pull request #101922 from penguwin/nextinspace
...
nextinspace: init at 1.0.6
2020-11-23 20:09:09 +01:00
Dmitry Kalinkin
68e06c19d6
snakemake: 5.19.3 -> 5.28.0
2020-11-17 17:37:35 -05:00
Nicolas Martin
9af958340a
nextinspace: init at 1.0.6
2020-11-17 15:41:53 +01:00
Oleksii Filonenko
512c3c0a05
maintainers: rename filalex77 -> Br1ght0ne
2020-11-17 13:09:31 +02:00
R. RyanTM
e3cf6e12bc
fahcontrol: 7.6.13 -> 7.6.21 ( #103677 )
2020-11-14 16:39:37 +00:00
R. RyanTM
68f44d990d
fahviewer: 7.6.13 -> 7.6.21 ( #103688 )
2020-11-14 16:39:20 +00:00
Orivej Desh
0c75dfb732
convertall: init at 0.8.0 ( #103108 )
2020-11-09 01:45:09 +00:00
R. RyanTM
41e1c236bf
cytoscape: 3.8.1 -> 3.8.2
2020-11-02 08:20:13 -08:00
Ben Siraphob
db74029e3e
treewide: remove package names from prefix of descriptions
2020-10-27 09:15:07 -07:00
evils
b8a03a66b3
fahclient: 7.6.9 -> 7.6.13 ( #99595 )
2020-10-05 14:40:10 +02:00
R. RyanTM
e66a7e2fb7
cytoscape: 3.8.0 -> 3.8.1
2020-09-25 04:38:49 +00:00
R. RyanTM
f47530237d
rink: 0.5.0 -> 0.5.1
2020-09-05 16:48:17 +00:00
Daniël de Kok
3ab2bf69ce
Merge pull request #85330 from chkno/openmvg
...
openmvg: 1.3 -> 1.5 (unbreak)
2020-08-16 09:39:38 +02:00
Scott Worley
05a16be9c5
openmvg: 1.3 -> 1.6 (unbreak)
2020-08-16 08:35:54 +02:00
Jonathan Ringer
23d6cd325f
root: don't propagated python interpreter
2020-08-09 10:44:15 -07:00
John Ericson
ef81828143
Merge pull request #94047 from kmicklas/fix-gplates
...
gplates: 2.0.0 -> 2.2.0, unbreak
2020-07-31 19:57:01 -04:00
Ken Micklas
7ae6e51bd4
gplates: 2.0.0 -> 2.2.0, unbreak
2020-07-27 20:54:18 -04:00
Vladyslav M
2076487221
rink: 0.4.5 -> 0.5.0
2020-07-18 13:30:05 +03:00
Dmitry Kalinkin
eb121e0901
snakemake: 5.17.0 -> 5.19.3
2020-07-02 23:36:20 -04:00
Markus Kowalewski
187b4a2e04
root: add license
2020-06-27 00:43:21 +02:00
Dmitry Kalinkin
df3a188b46
root5: 5.34.36 -> 5.34.38
...
Fixes: https://nvd.nist.gov/vuln/detail/CVE-2017-1000203
2020-06-18 16:42:02 -04:00
1000101
277bbb8efe
formatting: fix missing leading whitespace
2020-06-08 09:37:17 +02:00
R. RyanTM
c1b7c7e87c
snakemake: 5.16.0 -> 5.17.0 ( #88766 )
2020-05-24 13:32:14 -04:00
zimbatm
28357868f8
Merge pull request #88482 from r-ryantm/auto-update/fahcontrol
...
fahcontrol: 7.6.9 -> 7.6.13
2020-05-21 12:12:37 +02:00
zimbatm
1f6fcc7025
Merge pull request #88493 from r-ryantm/auto-update/fahviewer
...
fahviewer: 7.6.9 -> 7.6.13
2020-05-21 12:12:01 +02:00
R. RyanTM
f52889cd38
fahviewer: 7.6.9 -> 7.6.13
2020-05-21 08:53:14 +00:00
R. RyanTM
0cc843b538
fahcontrol: 7.6.9 -> 7.6.13
2020-05-21 06:24:27 +00:00
Lancelot SIX
b7c5508bfc
Merge pull request #86910 from lsix/cytoscape-3.8.0
...
cytoscape: 3.7.2 -> 3.8.0
2020-05-19 08:32:48 +01:00
Matt Huszagh
e8215cd634
colmap: update boost to 1.72 to fix build
2020-05-15 09:42:36 -07:00
R. RyanTM
92d970c766
snakemake: 5.15.0 -> 5.16.0 ( #87496 )
2020-05-10 10:09:53 -04:00
Lancelot SIX
b9d13090a8
cytoscape: 3.7.2 -> 3.8.0
...
See https://cytoscape.org/release_notes_3_8_0.html for release
information
2020-05-05 09:52:27 +01:00
evils
e257a92472
foldingathome: 7.5.1 -> 7.6.9 ( #86171 )
2020-04-28 17:20:43 +00:00
Renato Garcia
22133c6bf3
snakemake: 5.13.0 -> 5.15.0 ( #85913 )
2020-04-25 09:19:54 -04:00
Konrad Borowski
f527f9db3a
snakemake: update homepage link to use HTTPS
2020-04-24 19:44:59 -07:00
Konrad Borowski
40dd2c27c6
rink: update homepage link to use HTTPS
2020-04-24 19:44:59 -07:00
Matthew Bauer
1c8aba8334
treewide: use blas and lapack
...
This makes packages use lapack and blas, which can wrap different
BLAS/LAPACK implementations.
treewide: cleanup from blas/lapack changes
A few issues in the original treewide:
- can’t assume blas64 is a bool
- unused commented code
2020-04-17 16:24:09 -05:00
Michael Reilly
84cf00f980
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
R. RyanTM
cff5adc2fb
snakemake: 5.10.0 -> 5.13.0 ( #83839 )
2020-03-31 00:39:00 -04:00
Jörg Thalheim
e841dce44a
rink: fix strict deps build
2020-03-29 12:37:25 +01:00
Claudio Bley
39767f8ae5
foldingathome: Make FAHControl be able to start the FAHViewer ( #82925 )
...
The command to run when clicking the button is configurable, but by default it
tries to run `FAHViewer`.
2020-03-19 13:05:54 +00:00
Dmitry Kalinkin
68db99ad97
snakemake: 5.9.1 -> 5.10.0
2020-03-14 15:58:24 -07:00
zimbatm
001be890f7
folding@home: 6.02 -> 7.5.1
...
The v7 series is very different.
This commit introduces the 3 packages: fahclient, fahcontrol and
fahviewer. It also rebuilds the NixOS module to map better with the new
client.
2020-03-14 13:01:26 -07:00
Benjamin Hipple
ad30a30488
rustPlatform.fetchCargo: handle custom Cargo.lock patchfiles with validation
...
Previously, we would asssert that the lockfiles are consistent during the
unpackPhase, but if the pkg has a patch for the lockfile itself then we must
wait until the patchPhase is complete to check.
This also removes an implicity dependency on the src attribute coming from
`fetchzip` / `fetchFromGitHub`, which happens to name the source directory
"source". Now we glob for it, so different fetchers will work consistently.
2020-02-28 18:54:23 -08:00
Benjamin Hipple
eb11feaa0b
treewide: change fetchCargoTarball default to opt-out
...
Changes the default fetcher in the Rust Platform to be the newer
`fetchCargoTarball`, and changes every application using the current default to
instead opt out.
This commit does not change any hashes or cause any rebuilds. Once integrated,
we will start deleting the opt-outs and recomputing hashes.
See #79975 for details.
2020-02-13 22:41:37 -08:00
Millian Poquet
150f4a967c
simgrid: 3.24 -> 3.25
2020-02-03 10:37:03 -08:00
R. RyanTM
a94c66bc88
snakemake: 5.8.1 -> 5.9.1
2020-01-30 09:44:26 +00:00
Oleksii Filonenko
bc8dc2bd0a
rink: add filalex77 to maintainers
2020-01-06 12:41:19 +02:00
Oleksii Filonenko
8d8ce109cb
rink: 0.4.4 -> 0.4.5
2020-01-06 12:39:32 +02:00
Frederik Rietdijk
6d059becd3
Merge gcc-9 into staging ( #68029 )
2019-12-30 16:38:38 +01:00
Merijn Broeren
133103d709
treewide: replace make/build/configure/patchFlags with nix lists
2019-12-30 12:58:11 +01:00
Robin Gloster
1065d80dd3
simgrid: *Flags are lists
2019-12-30 12:15:25 +01:00
Dmitry Kalinkin
0b28198f23
root: wrap python executables
...
In normal use of ROOT the PYTHONPATH is intended to be set when user
sources the thisroot.{,s}sh. We do that in the setupHook. This covers
the case when thisroot.sh was not sourced.
2019-12-26 11:49:12 -05:00
Franz Pletz
77b6c3cd06
Merge remote-tracking branch 'origin/master' into gcc-9
2019-12-26 14:17:36 +01:00
Jan Tojnar
aee453e5c9
openmodelica: remove pangox dependency
...
It was probably just a dependency of `gtkglext` since I cannot find any reference to `pangox` in the repo.
But cannot verify build since it is broken.
2019-12-24 16:13:13 +01:00
Dmitry Kalinkin
b6d8873825
root: 6.12.06 -> 6.18.04
...
Also switch to python3.
2019-12-14 01:28:27 -08:00
R. RyanTM
13c757e69c
snakemake: 5.7.4 -> 5.8.1 ( #74637 )
2019-12-09 20:47:24 +01:00
Calvin Pritchard
1850d616ac
NetLogo: 6.0.4 -> 6.1.1
2019-12-07 22:24:26 +01:00
Mateusz Kowalczyk
1451a52a38
Remove myself (fuuzetsu) from maintainer lists
...
I haven't been doing any maintenance for a long time now and not only
do I get notified, it also creates a fake impression that all these
packages had at least one maintainer when in practice they had none.
2019-12-05 16:29:48 +09:00
Jonathan Ringer
0c1c18ca44
Merge branch 'master' into staging-next
2019-11-27 22:57:50 -08:00
Dmitry Kalinkin
bd0c4dd6ab
root: fix setupHook to work with "set -u"
2019-11-24 17:51:46 -05:00
Michael Raskin
c5e3aec122
golly: fix build
2019-11-22 17:41:46 +01:00
adisbladis
c9d8624ccd
treewide: Get rid of libGLU_combined
2019-11-18 20:10:43 +00:00
Dmitry Kalinkin
93ee8095b0
snakemake: 5.4.4 -> 5.7.4 ( #72929 )
...
(#72929 )
2019-11-13 00:46:56 +01:00
Franz Pletz
dffcb87383
colmap: fix build with gcc9
2019-11-03 14:43:33 +01:00
R. RyanTM
b73b9399ba
golly: 3.2 -> 3.3
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/golly/versions
2019-10-21 11:24:52 -07:00
Millian Poquet
5b9cbeb75c
simgrid: 3.23 -> 3.24
2019-10-14 16:08:43 +02:00
Aaron Andersen
063c82fd2f
Merge pull request #68773 from mimame/update/cytoscape-3.7.2
...
cytoscape: 3.7.1 -> 3.7.2
2019-09-15 09:43:11 -04:00
Miguel Madrid Mencía
148c82e07e
maintainer: mimadrid: update github username and personal data
2019-09-14 12:15:46 +02:00
Miguel Madrid Mencía
40b760e07c
cytoscape: 3.7.1 -> 3.7.2
2019-09-14 10:52:46 +02:00
volth
7b8fb5c06c
treewide: remove redundant quotes
2019-09-08 23:38:31 +00:00
Frederik Rietdijk
98ef78326d
Merge staging-next into staging
2019-08-31 18:07:33 +02:00
Frederik Rietdijk
96e5474329
Merge master into staging-next
2019-08-31 18:04:31 +02:00
