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656 Commits

Author SHA1 Message Date
Mario Rodas
37d0669466
Merge pull request #287403 from trofi/graphia-gcc-13-fix-update 
graphia: 3.2 -> 4.2
 2024-03-01 23:26:37 -05:00
R. Ryantm
6643d56edb snakemake: 8.4.8 -> 8.4.12 2024-02-23 12:38:33 -05:00
Fabian Affolter
4646a0c7db sasview: add changelog to meta 2024-02-19 16:02:14 +01:00
Fabian Affolter
711d382967 sasview: 5.0.4 -> 5.0.6 
Diff: https://github.com/SasView/sasview/compare/refs/tags/v5.0.4...v5.0.6
 2024-02-19 16:01:09 +01:00
OTABI Tomoya
9e52c50c55
Merge pull request #289381 from r-ryantm/auto-update/snakemake 
snakemake: 8.4.4 -> 8.4.8
 2024-02-19 23:16:21 +09:00
Dmitry Kalinkin
cb6f36e8ff
xrootd: fix plugin loading on Linux (#289140) 2024-02-17 15:38:01 -05:00
R. Ryantm
2444fc7fa5 snakemake: 8.4.4 -> 8.4.8 2024-02-16 21:15:11 +00:00
Dmitry Kalinkin
419da635c6
Merge pull request #285505 from GaetanLepage/xroot 
xrootd: 5.5.5 -> 5.6.6, python311Packages.xrootd: init at 5.6.6
 2024-02-14 11:15:22 -05:00
Bouke van der Bijl
91414c639f openmvg: unstable-2022-12-30 -> 2.1 
* Use the nixpkgs libraries instead of the vendored ones
* Add updateScript

Co-authored-by: Nick Cao <nickcao@nichi.co>
 2024-02-14 11:23:46 +01:00
Gaetan Lepage
7b9e11995d xrootd: 5.5.5 -> 5.6.6 
Changelog: https://github.com/xrootd/xrootd/releases/tag/v5.6.6

Structured attrs don't work with cmakeFlags - only first item is passed.

Co-authored-by: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
 2024-02-13 16:45:54 -05:00
R. Ryantm
1128be2775 openrefine: 3.7.7 -> 3.7.9 2024-02-11 17:18:59 +00:00
Weijia Wang
b95f9bd48c javaPackages.jogl_2_4_0: rename to jogl 2024-02-10 18:00:38 +01:00
Sergei Trofimovich
e006445420 graphia: 3.2 -> 4.2 
The main change is the build fis against `gcc-13`
https://hydra.nixos.org/build/247540136:

    /build/source/source/thirdparty/breakpad/src/client/linux/handler/minidump_descriptor.h:115:3: error: 'uintptr_t' does not name a type
      115 |   uintptr_t address_within_principal_mapping() const {
          |   ^~~~~~~~~

Changes:
- https://github.com/graphia-app/graphia/releases/tag/4.0
- https://github.com/graphia-app/graphia/releases/tag/4.1
- https://github.com/graphia-app/graphia/releases/tag/4.2
 2024-02-08 23:30:17 +00:00
R. Ryantm
0b9427cf71 snakemake: 8.3.2 -> 8.4.4 2024-02-06 18:59:24 -05:00
Raphael Das Gupta
13f6915775 openrefine: set meta.mainProgram 2024-02-06 13:49:34 +01:00
Weijia Wang
ab45f7963c
Merge pull request #282757 from r-ryantm/auto-update/bada-bib 
bada-bib: 0.8.0 -> 0.8.1
 2024-02-04 23:44:55 +01:00
arthsmn
4ee1815267 gplates: 2.3.0 -> 2.4 2024-02-04 14:19:31 +01:00
Robert Scott
e5e19d75c0
Merge pull request #265959 from risicle/ris-openrefine 
openrefine: init at 3.7.7
 2024-02-03 14:28:55 +00:00
Robert Scott
272f7bb1f4 openrefine: init at 3.7.7 2024-02-03 13:37:59 +00:00
h7x4
51c3e2b494
Merge pull request #285171 from r-ryantm/auto-update/boinc 
boinc: 7.24.2 -> 7.24.3
 2024-02-01 20:17:27 +01:00
Weijia Wang
a07361dd1c
Merge pull request #285382 from wegank/gplates-fix 
gplates: fix runtime error
 2024-02-01 19:42:53 +01:00
Weijia Wang
fa0efec1d5 gplates: fix runtime error 2024-01-31 23:16:41 +01:00
Dmitry Kalinkin
f125235a38
root: 6.30.02 -> 6.30.04 (#285339) 2024-01-31 15:25:14 -05:00
R. Ryantm
6fed14e6ac boinc: 7.24.2 -> 7.24.3 2024-01-31 03:49:58 +00:00
Jonas Chevalier
b1e30d76d4
fahclient: 8.1.18 -> 8.3.1 (#281830) 
* fahclient: 8.1.18 -> 8.3.1

* Update pkgs/applications/science/misc/foldingathome/client.nix

Co-authored-by: Robert Schütz <github@dotlambda.de>

* Update pkgs/applications/science/misc/foldingathome/client.nix

Co-authored-by: Robert Schütz <github@dotlambda.de>

---------

Co-authored-by: Robert Schütz <github@dotlambda.de>
 2024-01-29 18:17:16 +01:00
R. RyanTM
ec66ff787e
snakemake: 8.2.1 -> 8.3.2 (#284218) 2024-01-27 09:26:23 -05:00
R. Ryantm
4765bc88c6 bada-bib: 0.8.0 -> 0.8.1 2024-01-22 02:16:27 +00:00
Fabian Affolter
48433b4d36 cwltool: 3.1.20230213100550 -> 3.1.20240112164112 
Diff: https://github.com/common-workflow-language/cwltool/compare/refs/tags/3.1.20230213100550...3.1.20240112164112

Changelog: https://github.com/common-workflow-language/cwltool/releases/tag/3.1.20240112164112
 2024-01-21 10:32:48 +01:00
Dmitry Kalinkin
346cb05310 snakemake: 8.0.1 -> 8.2.1 2024-01-17 16:28:55 -05:00
Robert Scott
12a82c9c78
Merge pull request #279386 from r-ryantm/auto-update/rink 
rink: 0.6.3 -> 0.7.0
 2024-01-12 22:08:27 +00:00
Dmitry Kalinkin
be5b82b259
Merge pull request #275882 from veprbl/pr/snakemake_8_0_1 
snakemake: 7.32.4 -> 8.0.1
 2024-01-07 11:03:10 -05:00
R. Ryantm
a373789932 rink: 0.6.3 -> 0.7.0 2024-01-07 14:39:33 +00:00
Weijia Wang
553ccf3dfe tulip: fix build on darwin 2024-01-03 22:16:58 +01:00
R. Ryantm
c777f0bfa7 tulip: 5.7.2 -> 5.7.3 2023-12-28 07:46:06 +00:00
Dmitry Kalinkin
7ff81781f2 snakemake: 7.32.4 -> 8.0.1 2023-12-21 14:32:05 -05:00
Dmitry Kalinkin
d245890087
root: 6.28.10 -> 6.30.02 (#274348) 2023-12-17 05:20:40 -05:00
Dmitry Kalinkin
d4af6e420f
root: build with root7 and webgui (#272723) 2023-12-15 08:43:44 -05:00
Dmitry Kalinkin
1a5412e140
toil: 5.7.1 -> 5.12.0 (#273274) 2023-12-12 16:04:33 -05:00
Dmitry Kalinkin
190cb5fc41 root: 6.28.08 -> 6.28.10 2023-12-07 12:36:03 -05:00
Jonas Chevalier
80d540bd31
fahclient: wrap in FHS (#271994) 
Folding@home downloads arbitrary binaries that it runs and that have the
wrong loader.

Fixes https://github.com/NixOS/nixpkgs/pull/246832#issuecomment-1837625014
 2023-12-05 10:04:09 +01:00
sternenseemann
8c59811e4e root5: broken with clang 
Seems like any clang version > 5 doesn't work. Since root >= 6.0 is
available from nixpkgs, I think it is reasonable to mark it as broken
for now. Maybe someone can figure out if it is possible to backport a
fix from root >= 6.0.
 2023-12-04 19:43:08 +01:00
R. Ryantm
fc9bec86de simgrid: 3.34 -> 3.35 2023-11-28 16:59:53 +00:00
Jonas Chevalier
a403a118d1
fahclient: 7.6.21 -> 8.1.18 (#246832) 
Rebuild from source
 2023-11-27 14:20:58 +01:00
Pierre Bourdon
f4db50bafb
Merge pull request #269700 from NixOS/pr/root_warning_fix 
root: fix excessive build log size
 2023-11-25 10:38:13 +01:00
Dmitry Kalinkin
8ae6154b2b root: fix excessive build log size 2023-11-24 14:33:55 -05:00
Renato Garcia
3c87cb32f0
snakemake: 7.29.0 -> 7.32.4 (#266543) 2023-11-10 06:48:45 -05:00
Silvan Mosberger
fb2e311d1e root5: Fix build with Python 3.11 
Was broken since the Python update from https://github.com/NixOS/nixpkgs/pull/251878

This should fix the apfelgrid and applgrid builds, not tested yet
 2023-11-09 19:01:58 +01:00
Weijia Wang
5827957a06 root: drop patches 2023-11-07 02:42:16 +01:00
R. Ryantm
9ca6747e6b boinc: 7.24.1 -> 7.24.2 2023-10-31 08:44:00 +00:00
github-actions[bot]
fb3e2499b7
Merge master into staging-next 2023-10-21 00:02:17 +00:00