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toil: 5.7.1 -> 5.12.0 (#273274)

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Dmitry Kalinkin 2023-12-12 16:04:33 -05:00 committed by GitHub
parent ea9e108a0b
commit 1a5412e140
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1 changed files with 6 additions and 8 deletions
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14
pkgs/applications/science/misc/toil/default.nix
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@ -6,21 +6,16 @@
python3.pkgs.buildPythonApplication rec {
pname = "toil";
version = "5.7.1";
version = "5.12.0";
format = "setuptools";
src = fetchFromGitHub {
owner = "DataBiosphere";
repo = pname;
rev = "refs/tags/releases/${version}";
hash = "sha256-m+XvNyzd0ly2YqKhgxezgGaCXLs3CmupJMnp5RIZqNI=";
hash = "sha256-cTpbQo9tPZifUO59vbnIa3XUinFJ2/5Slfe4yszglFM=";
};
postPatch = ''
substituteInPlace requirements.txt \
--replace "docker>=3.7.2, <6" "docker"
'';
propagatedBuildInputs = with python3.pkgs; [
addict
dill
@ -42,7 +37,6 @@ python3.pkgs.buildPythonApplication rec {
boto
botocore
flask
mypy-boto3-s3
pytestCheckHook
stubserver
]);
@ -63,6 +57,10 @@ python3.pkgs.buildPythonApplication rec {
"src/toil/test/src"
"src/toil/test/wdl"
"src/toil/test/utils/utilsTest.py"
"src/toil/test/cwl/cwlTest.py"
"src/toil/test/lib/test_ec2.py"
"src/toil/test/lib/aws/test_iam.py"
"src/toil/test/lib/aws/test_s3.py"
];
disabledTests = [