Commit Graph

656 Commits

Author SHA1 Message Date
Fabian Affolter
b9c6bff4f0 nextinspace: 1.0.6 -> 2.0.3 2022-01-09 01:17:23 +01:00
Ben Siraphob
39a0a70d29
treewide: fix homepages with permanent redirect to https 2021-12-29 22:06:47 +07:00
Rasmus Thomsen
83e5da9238
bada-bib: init at 0.3.0 2021-12-28 12:40:39 +01:00
Dmitry Kalinkin
d5bdb7d39d
root: fix installation of bin/rootcint and bin/genreflex 2021-12-26 00:07:49 -05:00
Bobby Rong
bcaa1b4633
Merge pull request #149151 from Luflosi/update/boinc
boinc: 7.14.2 -> 7.18.1
2021-12-18 21:32:22 +08:00
Oleksii Filonenko
a400948064
Merge pull request #149167 from r-ryantm/auto-update/rink
rink: 0.6.1 -> 0.6.2
2021-12-13 14:40:57 +02:00
R. Ryantm
3112fe2ace openmvg: 1.6 -> 2.0 2021-12-07 20:17:43 +00:00
R. Ryantm
5517f74759 rink: 0.6.1 -> 0.6.2 2021-12-06 23:57:17 +00:00
Luflosi
ca87168c6e
boinc: copy systemd service file to output 2021-12-06 23:56:06 +01:00
Luflosi
4e0d9003fc
boinc: 7.14.2 -> 7.18.1 2021-12-06 23:56:06 +01:00
Luflosi
a7be4f3840
boinc: add Luflosi as maintainer 2021-12-06 23:56:05 +01:00
Michael Raskin
65b2df8b45 golly: 3.3 -> 4.1 2021-12-06 16:27:09 +01:00
Bernardo Meurer
51694b0af4 root5: binutils 2.37 fix
Co-authored-by: TredwellGit <tredwell@tutanota.com>
2021-11-28 08:49:32 +00:00
Dmitry Kalinkin
a1b8eb4a30
Merge pull request #144870 from fabaff/fix-cwltool
cwltool: 3.1.20210628163208 -> 3.1.20211104071347
2021-11-11 23:41:46 -05:00
Felix Buehler
b52ab3b712 pkgs/applications: rename name to pname&version part 2 2021-11-07 14:53:06 +01:00
Fabian Affolter
18b531b514 cwltool: 3.1.20210628163208 -> 3.1.20211104071347 2021-11-06 13:01:16 +01:00
R. Ryantm
5ba5ff1a84 cytoscape: 3.8.2 -> 3.9.0 2021-10-29 09:08:26 +00:00
Dmitry Kalinkin
49d19b7945
snakemake: 6.7.0 -> 6.10.0 2021-10-24 17:49:14 -04:00
Vladimir Korolev
72d4a1f13d openmodelica: v1.17.0 -> v1.18.0, add balodja to openmodelica maintainers 2021-10-02 12:39:57 +03:00
Robert Schütz
98c8fc6fd0 gplates: 2.2.0 -> 2.3.0 2021-09-26 23:11:29 -07:00
Dmitry Kalinkin
84f408f206
Merge pull request #136016 from veprbl/pr/root_6_24_04
root: 6.24.02 -> 6.24.06
2021-09-15 11:35:07 -04:00
Dmitry Kalinkin
0ec2acf51f
root: build with -Dimt=ON 2021-09-03 12:41:16 -04:00
Dmitry Kalinkin
95b2d74bc5
root: re-enable unvendored LLVM 2021-09-03 12:41:16 -04:00
Dmitry Kalinkin
aedfb59c87
root: 6.24.02 -> 6.24.06 2021-09-03 12:41:04 -04:00
Dmitry Kalinkin
0a312a356c
root5: fix for gcc10 2021-09-01 07:14:56 -04:00
Dmitry Kalinkin
b8c5c06aab
snakemake: 6.6.1 -> 6.7.0 2021-08-28 02:18:38 -04:00
Dmitry Kalinkin
e51edc1e64
Merge pull request #130903 from veprbl/pr/cwltool
cwltool: init at 3.1.20210628163208
2021-08-08 11:15:33 -04:00
Ben Siraphob
0f34985134
Merge pull request #122828 from balodja/openmodelica 2021-07-25 09:24:25 +07:00
Vladimir Korolev
5c8561f11a openmodelica: 1.9.3 -> 1.17.0 with lots of changes
Co-authored-by: Jaakko Luttinen <jaakko.luttinen@iki.fi>

Most of changes are:
* separate packages for different openmodelica components,
* qt4 -> qt5,
* patches to instruct the OMEdit wrapper with stdenv executables
  location,
* adoption of #89731 and #109595,
* openblas -> blas, lapack according to #83888,
* parallel building,
* getting rid of spurious build phases,
* correct the license,
* cross-compilation,
* forcing compiler to clang++ according to OM build recommendations,
* drop of pangox_compat according to #75909 and #76412,
* better dependencies, and more.
2021-07-24 20:29:26 +03:00
Dmitry Kalinkin
3f24366cda
cwltool: init at 3.1.20210628163208 2021-07-21 22:11:17 -04:00
Sandro
d06f7e07a6
Merge pull request #130925 from SuperSandro2000/python-aliases 2021-07-22 03:21:11 +02:00
Sandro Jäckel
b4099137b1
pythonPackages: deprecate ConfigArgParse alias 2021-07-21 13:32:54 +02:00
Sandro
aee461ddb4
toil: update homepage 2021-07-21 13:28:37 +02:00
Dmitry Kalinkin
866fe59150
toil: init at 5.4.0 2021-07-20 22:18:08 -04:00
Dmitry Kalinkin
3a79b1fece
snakemake: 6.5.3 -> 6.6.1 2021-07-19 16:22:36 -04:00
Dmitry Kalinkin
a93f2af20b
snakemake: add missing optional dependenices
These are needed to generate reports
2021-07-19 16:19:27 -04:00
Millian Poquet
c6f34aeaef simgrid: compile tests in parallel 2021-07-19 14:05:17 +02:00
Millian Poquet
c4ec6ffb78 simgrid: fix paths in smpicc/smpicxx 2021-07-19 14:04:57 +02:00
Millian Poquet
33f915f241 simgrid: propagate boost
Since SimGrid include files directly include boost files,
most SimGrid users need boost as well.
2021-07-19 14:03:50 +02:00
Millian Poquet
2d05c2d535 simgrid: 3.27 -> 3.28 2021-07-19 14:01:30 +02:00
Felix Buehler
82cb33a0ae treewide: remove meta.version 2021-07-18 00:07:38 +02:00
Dmitry Kalinkin
1cbb9c64d1
root,root5: apply nixpkgs-fmt 2021-07-14 16:23:09 -04:00
Dmitry Kalinkin
62ab958fb0
root: 6.24.00 -> 6.24.02 2021-07-14 14:58:15 -04:00
Dmitry Kalinkin
45bed6d99f
snakemake: 6.5.0 -> 6.5.3 2021-07-11 10:40:09 -04:00
Andrew Childs
55dcd99859 root: use pure CoreSymbolication on Darwin
The current build works by linking against CoreSymbolication in
/System/Library/PrivateFrameworks. This is impure and doesn't work in
newer versions of macOS.

See https://github.com/NixOS/nixpkgs/issues/128576
2021-06-29 11:00:05 +09:00
Dmitry Kalinkin
e3678ae8a6
snakemake: 6.0.5 -> 6.5.0 2021-06-24 11:36:26 -04:00
Sandro
47480918a5
Merge pull request #125802 from yipengsun/root-6-24-00 2021-06-09 15:42:05 +02:00
Yipeng Sun
ffced8d681 root: 6.22.08 -> 6.24.00
We switched to the bundled llvm-clang combo because to use the llvm
provided in nixpkgs, clang also needs to be patched and built
externally, which is too much trouble.
2021-06-09 14:06:13 +02:00
Sandro
c037394f5f
Merge pull request #117606 from bgamari/graphia 2021-06-05 16:31:10 +02:00
Ben Gamari
dcfaa98677 graphia: init at 2.2
Graphia is a relatively new tool for graph visualisation and analysis,
in the same vain as gephi.
2021-06-02 09:07:32 -04:00
Sandro Jäckel
d6ff646b3f pythonPackages.smart_open: rename to smart-open 2021-05-22 15:02:50 -07:00
Stéphan Kochen
7e9451ffb3
rink: fix darwin build (#123501) 2021-05-18 10:34:25 -04:00
Jonathan Ringer
1d85caaa26 root: fix build 2021-05-08 01:29:18 -07:00
V
5a835e6e92 rink: 0.6.0 -> 0.6.1 2021-05-01 10:46:51 +02:00
Fabian Affolter
e4149e6e0b
rink: specify license 2021-04-11 23:18:32 +02:00
R. RyanTM
12518ff683 rink: 0.5.1 -> 0.6.0 2021-04-11 14:49:45 +00:00
Dmitry Kalinkin
1d93243467
root: 6.22.06 -> 6.22.08 2021-04-06 02:41:06 -04:00
Sandro Jäckel
3453b89f4b
lzma: deprecate alias 2021-04-04 19:49:52 +02:00
Millian Poquet
99a5de6ebc simgrid: 3.26 -> 3.27 2021-03-29 21:20:27 +02:00
Dmitry Kalinkin
8887f4655e
snakemake: 5.28.0 -> 6.0.5 2021-03-26 18:32:26 -04:00
Ben Siraphob
e03c068af5 treewide: makeWrapper buildInputs to nativeBuildInputs 2021-02-19 20:09:16 +07:00
Sandro Jäckel
6ad10c3bcd
treewide: Remove doBuild cause it does not exist 2021-02-02 14:46:06 +01:00
Pavol Rusnak
a6ce00c50c
treewide: remove stdenv where not needed 2021-01-25 18:31:47 +01:00
Jonathan Ringer
9bb3fccb5b treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
continuation of #109595

pkgconfig was aliased in 2018, however, it remained in
all-packages.nix due to its wide usage. This cleans
up the remaining references to pkgs.pkgsconfig and
moves the entry to aliases.nix.

python3Packages.pkgconfig remained unchanged because
it's the canonical name of the upstream package
on pypi.
2021-01-19 01:16:25 -08:00
Ben Siraphob
badf51221d treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
Profpatsch
4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00
Frederik Rietdijk
b20838eb4a Merge staging-next into staging 2021-01-04 20:51:32 +01:00
Sandro
6ac4c2d1f6
Merge pull request #107962 from flyfloh/colmap-36 2021-01-04 14:25:21 +01:00
Ben Siraphob
3ae5e6ce03 treewide: remove enableParallelBuilding = true if using cmake 2021-01-03 18:37:40 +07:00
github-actions[bot]
0eb369d907
Merge staging-next into staging 2021-01-01 18:39:12 +00:00
Dmitry Kalinkin
8bee208bf8
Merge pull request #107335 from veprbl/pr/root_6_20_08
root: 6.18.04 -> 6.22.06, don't build vendored LLVM
2021-01-01 12:28:37 -05:00
Ben Siraphob
b04fc593e7 treewide: cmake buildInputs to nativeBuildInputs, minor cleanups 2021-01-01 11:52:33 +07:00
Florian Pester
b740afa546 colmap: 3.5 -> 3.6 2020-12-31 09:56:07 +01:00
Florian Pester
75eef96f08 colmapWithCuda: fix build 2020-12-31 09:56:07 +01:00
Dmitry Kalinkin
a30bff21e8
root: use llvm_5 from nixpkgs 2020-12-21 18:24:25 -05:00
Dmitry Kalinkin
b7e70092c5
root: 6.20.08 -> 6.22.06 2020-12-21 16:43:09 -05:00
Dmitry Kalinkin
7d6e0d5324
root: 6.18.04 -> 6.20.08 2020-12-20 23:49:54 -05:00
Millian Poquet
15ab96d5a7 simgrid: 3.25 -> 3.26 2020-12-19 14:03:33 +01:00
Sandro
b2219a326b
Merge pull request #101922 from penguwin/nextinspace
nextinspace: init at 1.0.6
2020-11-23 20:09:09 +01:00
Dmitry Kalinkin
68e06c19d6
snakemake: 5.19.3 -> 5.28.0 2020-11-17 17:37:35 -05:00
Nicolas Martin
9af958340a
nextinspace: init at 1.0.6 2020-11-17 15:41:53 +01:00
Oleksii Filonenko
512c3c0a05 maintainers: rename filalex77 -> Br1ght0ne 2020-11-17 13:09:31 +02:00
R. RyanTM
e3cf6e12bc
fahcontrol: 7.6.13 -> 7.6.21 (#103677) 2020-11-14 16:39:37 +00:00
R. RyanTM
68f44d990d
fahviewer: 7.6.13 -> 7.6.21 (#103688) 2020-11-14 16:39:20 +00:00
Orivej Desh
0c75dfb732
convertall: init at 0.8.0 (#103108) 2020-11-09 01:45:09 +00:00
R. RyanTM
41e1c236bf cytoscape: 3.8.1 -> 3.8.2 2020-11-02 08:20:13 -08:00
Ben Siraphob
db74029e3e treewide: remove package names from prefix of descriptions 2020-10-27 09:15:07 -07:00
evils
b8a03a66b3
fahclient: 7.6.9 -> 7.6.13 (#99595) 2020-10-05 14:40:10 +02:00
R. RyanTM
e66a7e2fb7 cytoscape: 3.8.0 -> 3.8.1 2020-09-25 04:38:49 +00:00
R. RyanTM
f47530237d rink: 0.5.0 -> 0.5.1 2020-09-05 16:48:17 +00:00
Daniël de Kok
3ab2bf69ce
Merge pull request #85330 from chkno/openmvg
openmvg: 1.3 -> 1.5 (unbreak)
2020-08-16 09:39:38 +02:00
Scott Worley
05a16be9c5 openmvg: 1.3 -> 1.6 (unbreak) 2020-08-16 08:35:54 +02:00
Jonathan Ringer
23d6cd325f root: don't propagated python interpreter 2020-08-09 10:44:15 -07:00
John Ericson
ef81828143
Merge pull request #94047 from kmicklas/fix-gplates
gplates: 2.0.0 -> 2.2.0, unbreak
2020-07-31 19:57:01 -04:00
Ken Micklas
7ae6e51bd4 gplates: 2.0.0 -> 2.2.0, unbreak 2020-07-27 20:54:18 -04:00
Vladyslav M
2076487221
rink: 0.4.5 -> 0.5.0 2020-07-18 13:30:05 +03:00
Dmitry Kalinkin
eb121e0901
snakemake: 5.17.0 -> 5.19.3 2020-07-02 23:36:20 -04:00
Markus Kowalewski
187b4a2e04
root: add license 2020-06-27 00:43:21 +02:00
Dmitry Kalinkin
df3a188b46
root5: 5.34.36 -> 5.34.38
Fixes: https://nvd.nist.gov/vuln/detail/CVE-2017-1000203
2020-06-18 16:42:02 -04:00
1000101
277bbb8efe formatting: fix missing leading whitespace 2020-06-08 09:37:17 +02:00
R. RyanTM
c1b7c7e87c
snakemake: 5.16.0 -> 5.17.0 (#88766) 2020-05-24 13:32:14 -04:00
zimbatm
28357868f8
Merge pull request #88482 from r-ryantm/auto-update/fahcontrol
fahcontrol: 7.6.9 -> 7.6.13
2020-05-21 12:12:37 +02:00
zimbatm
1f6fcc7025
Merge pull request #88493 from r-ryantm/auto-update/fahviewer
fahviewer: 7.6.9 -> 7.6.13
2020-05-21 12:12:01 +02:00
R. RyanTM
f52889cd38 fahviewer: 7.6.9 -> 7.6.13 2020-05-21 08:53:14 +00:00
R. RyanTM
0cc843b538 fahcontrol: 7.6.9 -> 7.6.13 2020-05-21 06:24:27 +00:00
Lancelot SIX
b7c5508bfc
Merge pull request #86910 from lsix/cytoscape-3.8.0
cytoscape: 3.7.2 -> 3.8.0
2020-05-19 08:32:48 +01:00
Matt Huszagh
e8215cd634 colmap: update boost to 1.72 to fix build 2020-05-15 09:42:36 -07:00
R. RyanTM
92d970c766
snakemake: 5.15.0 -> 5.16.0 (#87496) 2020-05-10 10:09:53 -04:00
Lancelot SIX
b9d13090a8
cytoscape: 3.7.2 -> 3.8.0
See https://cytoscape.org/release_notes_3_8_0.html for release
information
2020-05-05 09:52:27 +01:00
evils
e257a92472
foldingathome: 7.5.1 -> 7.6.9 (#86171) 2020-04-28 17:20:43 +00:00
Renato Garcia
22133c6bf3
snakemake: 5.13.0 -> 5.15.0 (#85913) 2020-04-25 09:19:54 -04:00
Konrad Borowski
f527f9db3a snakemake: update homepage link to use HTTPS 2020-04-24 19:44:59 -07:00
Konrad Borowski
40dd2c27c6 rink: update homepage link to use HTTPS 2020-04-24 19:44:59 -07:00
Matthew Bauer
1c8aba8334 treewide: use blas and lapack
This makes packages use lapack and blas, which can wrap different
BLAS/LAPACK implementations.

treewide: cleanup from blas/lapack changes

A few issues in the original treewide:

- can’t assume blas64 is a bool
- unused commented code
2020-04-17 16:24:09 -05:00
Michael Reilly
84cf00f980
treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
R. RyanTM
cff5adc2fb
snakemake: 5.10.0 -> 5.13.0 (#83839) 2020-03-31 00:39:00 -04:00
Jörg Thalheim
e841dce44a
rink: fix strict deps build 2020-03-29 12:37:25 +01:00
Claudio Bley
39767f8ae5
foldingathome: Make FAHControl be able to start the FAHViewer (#82925)
The command to run when clicking the button is configurable, but by default it
tries to run `FAHViewer`.
2020-03-19 13:05:54 +00:00
Dmitry Kalinkin
68db99ad97 snakemake: 5.9.1 -> 5.10.0 2020-03-14 15:58:24 -07:00
zimbatm
001be890f7 folding@home: 6.02 -> 7.5.1
The v7 series is very different.

This commit introduces the 3 packages: fahclient, fahcontrol and
fahviewer. It also rebuilds the NixOS module to map better with the new
client.
2020-03-14 13:01:26 -07:00
Benjamin Hipple
ad30a30488 rustPlatform.fetchCargo: handle custom Cargo.lock patchfiles with validation
Previously, we would asssert that the lockfiles are consistent during the
unpackPhase, but if the pkg has a patch for the lockfile itself then we must
wait until the patchPhase is complete to check.

This also removes an implicity dependency on the src attribute coming from
`fetchzip` / `fetchFromGitHub`, which happens to name the source directory
"source". Now we glob for it, so different fetchers will work consistently.
2020-02-28 18:54:23 -08:00
Benjamin Hipple
eb11feaa0b treewide: change fetchCargoTarball default to opt-out
Changes the default fetcher in the Rust Platform to be the newer
`fetchCargoTarball`, and changes every application using the current default to
instead opt out.

This commit does not change any hashes or cause any rebuilds. Once integrated,
we will start deleting the opt-outs and recomputing hashes.

See #79975 for details.
2020-02-13 22:41:37 -08:00
Millian Poquet
150f4a967c simgrid: 3.24 -> 3.25 2020-02-03 10:37:03 -08:00
R. RyanTM
a94c66bc88 snakemake: 5.8.1 -> 5.9.1 2020-01-30 09:44:26 +00:00
Oleksii Filonenko
bc8dc2bd0a
rink: add filalex77 to maintainers 2020-01-06 12:41:19 +02:00
Oleksii Filonenko
8d8ce109cb
rink: 0.4.4 -> 0.4.5 2020-01-06 12:39:32 +02:00
Frederik Rietdijk
6d059becd3 Merge gcc-9 into staging (#68029) 2019-12-30 16:38:38 +01:00
Merijn Broeren
133103d709
treewide: replace make/build/configure/patchFlags with nix lists 2019-12-30 12:58:11 +01:00
Robin Gloster
1065d80dd3
simgrid: *Flags are lists 2019-12-30 12:15:25 +01:00
Dmitry Kalinkin
0b28198f23
root: wrap python executables
In normal use of ROOT the PYTHONPATH is intended to be set when user
sources the thisroot.{,s}sh. We do that in the setupHook. This covers
the case when thisroot.sh was not sourced.
2019-12-26 11:49:12 -05:00
Franz Pletz
77b6c3cd06
Merge remote-tracking branch 'origin/master' into gcc-9 2019-12-26 14:17:36 +01:00
Jan Tojnar
aee453e5c9
openmodelica: remove pangox dependency
It was probably just a dependency of `gtkglext` since I cannot find any reference to `pangox` in the repo.

But cannot verify build since it is broken.
2019-12-24 16:13:13 +01:00
Dmitry Kalinkin
b6d8873825 root: 6.12.06 -> 6.18.04
Also switch to python3.
2019-12-14 01:28:27 -08:00
R. RyanTM
13c757e69c snakemake: 5.7.4 -> 5.8.1 (#74637) 2019-12-09 20:47:24 +01:00
Calvin Pritchard
1850d616ac NetLogo: 6.0.4 -> 6.1.1 2019-12-07 22:24:26 +01:00
Mateusz Kowalczyk
1451a52a38 Remove myself (fuuzetsu) from maintainer lists
I haven't been doing any maintenance for a long time now and not only
do I get notified, it also creates a fake impression that all these
packages had at least one maintainer when in practice they had none.
2019-12-05 16:29:48 +09:00
Jonathan Ringer
0c1c18ca44
Merge branch 'master' into staging-next 2019-11-27 22:57:50 -08:00
Dmitry Kalinkin
bd0c4dd6ab
root: fix setupHook to work with "set -u" 2019-11-24 17:51:46 -05:00
Michael Raskin
c5e3aec122 golly: fix build 2019-11-22 17:41:46 +01:00
adisbladis
c9d8624ccd
treewide: Get rid of libGLU_combined 2019-11-18 20:10:43 +00:00
Dmitry Kalinkin
93ee8095b0 snakemake: 5.4.4 -> 5.7.4 (#72929)
(#72929)
2019-11-13 00:46:56 +01:00
Franz Pletz
dffcb87383
colmap: fix build with gcc9 2019-11-03 14:43:33 +01:00
R. RyanTM
b73b9399ba golly: 3.2 -> 3.3
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/golly/versions
2019-10-21 11:24:52 -07:00
Millian Poquet
5b9cbeb75c simgrid: 3.23 -> 3.24 2019-10-14 16:08:43 +02:00
Aaron Andersen
063c82fd2f
Merge pull request #68773 from mimame/update/cytoscape-3.7.2
cytoscape: 3.7.1 -> 3.7.2
2019-09-15 09:43:11 -04:00
Miguel Madrid Mencía
148c82e07e
maintainer: mimadrid: update github username and personal data 2019-09-14 12:15:46 +02:00
Miguel Madrid Mencía
40b760e07c
cytoscape: 3.7.1 -> 3.7.2 2019-09-14 10:52:46 +02:00
volth
7b8fb5c06c treewide: remove redundant quotes 2019-09-08 23:38:31 +00:00
Frederik Rietdijk
98ef78326d Merge staging-next into staging 2019-08-31 18:07:33 +02:00
Frederik Rietdijk
96e5474329 Merge master into staging-next 2019-08-31 18:04:31 +02:00
Alexander
35ac3344e7 colmap: init at 3.5 (#67759)
* colmap: init at 3.5
2019-08-31 08:06:46 -04:00
volth
7bb6b373ab treewide: name -> pname (#67513) 2019-08-31 07:41:22 -04:00
volth
08f68313a4 treewide: remove redundant rec 2019-08-28 11:07:32 +00:00
Vladimír Čunát
2e6bf42a22
Merge branch 'master' into staging-next
There ver very many conflicts, basically all due to
name -> pname+version.  Fortunately, almost everything was auto-resolved
by kdiff3, and for now I just fixed up a couple evaluation problems,
as verified by the tarball job.  There might be some fallback to these
conflicts, but I believe it should be minimal.

Hydra nixpkgs: ?compare=1538299
2019-08-24 08:55:37 +02:00
R. RyanTM
187ec1a8c6 tulip: 5.1.0 -> 5.2.1
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/tulip/versions
2019-08-20 19:45:43 -07:00
volth
c814d72b51 treewide: name -> pname 2019-08-17 10:54:38 +00:00
volth
46420bbaa3 treewide: name -> pname (easy cases) (#66585)
treewide replacement of

stdenv.mkDerivation rec {
  name = "*-${version}";
  version = "*";

to pname
2019-08-15 13:41:18 +01:00
Lancelot SIX
2e955ca4c5
motu_client: drop
This fork of cls-motu is unmaintained. Remove it from nixpkgs.
2019-08-05 14:32:25 +02:00
Orivej Desh
b5d1d50aa9 google-gflags: move to aliases.nix
google-gflags were renamed to gflags in 2012:
https://github.com/gflags/gflags/#25-january-2012

gflags.name will be updated in staging.
2019-07-25 09:18:32 +00:00
Frederik Rietdijk
79a03641d5 Merge staging-next into staging 2019-07-09 15:46:26 +02:00
Millian Poquet
0513ae77ff simgrid: 3.22.2 -> 3.23 2019-07-08 14:00:14 +02:00
Daiderd Jordan
da7bcec42f
root: remove cf-private 2019-07-03 22:20:22 +02:00
Alyssa Ross
062210bdff treewide: update cargoSha256 hashes for cargo-vendor upgrade
A recent upgrade of cargo-vendor changed its output slightly, which
broke all cargoSha256 hashes in nixpkgs.
See https://github.com/NixOS/nixpkgs/issues/60668 for more information.

Since then, a few hashes have been fixed in master by hand, but there
were a lot still to do, so I did all of the ones left over with some
scripts I wrote.

The one hash I wasn’t able to update was habitat's, because it’s
currently broken and the build doesn’t get far enough to produce a
hash anyway.
2019-06-01 15:17:52 +00:00
Millian Poquet
13aa449bab simgrid: remove unneeded 'name' definition 2019-05-15 12:35:12 +02:00
Millian Poquet
00fc5bd08f simgrid: override checkPhase -> preCheck
This commit changes how failing tests are ignored.
- Previously, the whole checkPhase was overridden.
- Now, preCheck generates a ctest ignore file.

ctest doc: https://gitlab.kitware.com/cmake/community/wikis/doc/ctest/Testing-With-CTest#customizing-ctest
2019-05-14 18:27:51 +02:00
Millian Poquet
aa29b79e8a simgrid: fetchgit -> fetchFromGitLab 2019-05-13 21:26:09 +02:00
Millian Poquet
c7ab2b9499 simgrid: 3.21 -> 3.22.2
- GitHub -> Framagit (SimGrid main repo has moved)
- Test binaries must now be explicitly compiled (`make tests`)
- Fix broken documentation link
2019-05-13 18:58:27 +02:00
Daniel Schaefer
bac4d95aa2 treewide: Change URLs to HTTPS
Lots of URLs were HTTP redirect to HTTPS. Changed those and checked them
if there's actual content. Inspired by
https://github.com/NixOS/nixpkgs/issues/60004
2019-04-22 10:19:54 +02:00
Matthew Bauer
f475aeaf29
Merge pull request #59535 from matthewbauer/homepage-fixes
treewide: update homepages to https where available
2019-04-15 20:47:30 -04:00
Matthew Bauer
290a5d916e treewide: update homepages to https where available
Based on "problems" from repology:

https://repology.org/repository/nix_unstable/problems

Mostly simple changes to reflect redirects.
2019-04-15 10:10:05 -04:00
Michael Raskin
796050fedd openmvs: mark as broken 2019-04-14 17:45:21 +02:00
Dmitry Kalinkin
c321b64b3f
snakemake: 5.2.2 -> 5.4.4 2019-04-10 14:18:26 -04:00
Dmitry Kalinkin
c36f841ec7
root5: fix build 2019-03-20 00:26:13 -04:00
Peter Hoeg
136126ceae
Merge pull request #56498 from ariutta/patch-1
cytoscape: bump 3.6.1 -> 3.7.1
2019-03-11 11:20:50 +08:00
Jan Tojnar
d3ff902e94
webkit: move to aliases 2019-03-06 00:20:55 +01:00
Dmitry Kalinkin
aa4f5cc4a3
simgrid: Fix the upstream project URL
Closes: #56849
2019-03-04 16:42:46 -05:00
Anders Riutta
c792fd107b
cytoscape: bump 3.6.1 -> 3.7.1
Needed to update URL, because `wget "http://chianti.ucsd.edu/cytoscape-3.7.1/cytoscape-3.7.1.tar.gz"` returns `404`.
2019-02-27 16:40:50 -08:00
Sebastien Bourdeauducq
3b03b901fb rink: init at 0.4.4 2019-02-03 13:29:18 +08:00
Vladimír Čunát
bde8efe792
Merge branch 'master' into staging-next
A couple thousand rebuilds have accumulated on master.
2019-01-12 12:19:34 +01:00
Dmitry Kalinkin
73625f2522 root5: mark as broken on Linux 2019-01-11 20:45:37 -05:00
Dmitry Kalinkin
0c9335fb1c root, root5: fix build on darwin 2019-01-11 20:45:37 -05:00
Vladimír Čunát
287144e342
Merge branch 'master' into staging-next 2019-01-10 13:07:21 +01:00
Piotr Bogdan
71f216b7e6 golly-beta: link with lib{dl,GL} explicitly 2019-01-04 21:44:19 +00:00
Frederik Rietdijk
0a2caa41fe Python: drop python.majorVersion
Drop `python.majorVersion`. For Python language version, use `python.pythonVersion`.
For implementation version, use `python.sourceVersion`.

Some expressions were broken. Those that were identified were fixed.

fixup major
2019-01-04 10:45:22 +01:00
c0bw3b
0f868d8116 Treewide: use HTTPS on SourceForge 2018-12-02 15:33:08 +01:00
Vladimír Čunát
a5de78b7d7
Merge branch 'master' into staging-next 2018-11-26 10:28:00 +01:00
c0bw3b
0ea604ac1d Treewide: use https for SourceForge 2018-11-24 19:58:03 +01:00
Frederik Rietdijk
c31cb577ae Merge master into staging-next 2018-11-22 09:57:08 +01:00
worldofpeace
2e70b40f58
Merge pull request #49376 from dpaetzel/package-netlogo
NetLogo: init 6.0.4
2018-11-21 21:37:01 -05:00
David Pätzel
fa623ad828 netlogo: init 6.0.4 2018-11-21 09:38:22 +01:00
Frederik Rietdijk
0d0d7dcd06 Merge staging-next into staging 2018-11-18 10:41:34 +01:00
Kevin Liu
c93b16829c
boinc: 7.8.0 -> 7.14.2 2018-11-16 15:52:22 -05:00
Patrick Hilhorst
9ec40cc3bf
treewide: Fix overrides having wrong versions 2018-11-06 00:06:21 +01:00
Tristan Helmich (omniIT)
4f8cac02c6 simgrid: 3.20 -> 3.21 2018-11-02 14:23:39 +01:00
Adam Washington
6be90bf8d7
sasmodels: unstable -> 4.2.0 2018-10-17 14:36:46 +01:00
Dmitry Kalinkin
3187db6e8d root5: init at 5.34.36 2018-09-24 14:34:49 -04:00
Markus Kowalewski
70e254d6bd
root: add license 2018-09-08 14:51:28 +02:00
Renato Garcia
318c9296fa snakemake: add maintainers (#46117) 2018-09-05 21:46:17 +02:00
Sebastian Meric de Bellefon
93ce77af40 python.pkgs.snakemake: init at 5.2.2 2018-09-01 09:18:19 -04:00
Vladimír Čunát
cbabebcc2e
Merge branch 'master' into staging-next
Hydra: ?compare=1473892
2018-08-17 13:45:21 +02:00
Michael Mercier
b8566965df Update simgrid 3.19.1 -> 3.20 + parallel tests + enable darwin (#42721)
* simgrid: 3.19.1 -> 3.20

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/simgrid/versions.

These checks were done:

- built on NixOS
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/smpicc passed the binary check.
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/smpicxx passed the binary check.
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/smpirun passed the binary check.
- Warning: no invocation of /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/tesh had a zero exit code or showed the expected version
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/simgrid-colorizer passed the binary check.
- Warning: no invocation of /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/simgrid_update_xml had a zero exit code or showed the expected version
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/simgrid_convert_TI_traces passed the binary check.
- Warning: no invocation of /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/smpimain had a zero exit code or showed the expected version
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/graphicator passed the binary check.
- 6 of 9 passed binary check by having a zero exit code.
- 4 of 9 passed binary check by having the new version present in output.
- found 3.20 with grep in /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20
- directory tree listing: https://gist.github.com/edefc2f1a2e81412484edc2e45986e03
- du listing: https://gist.github.com/a44f7d57537e93152a8e6c569f8ed1ae

* simgrid: 3.19.1 -> 3.20 + add darwin

- Fix dependencies to enable build on darwin
- Add ctest flag to enable parallel testing

* Use simpler parallel testing logic

because it is already done in nixpkgs/pkgs/stdenv/generic/setup.sh
2018-08-15 19:54:41 -05:00
John Ericson
db965063b3 treewide: Make configureFlags lists 2018-08-03 17:06:03 -04:00
volth
52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
volth
87f5930c3f [bot]: remove unreferenced code 2018-07-20 18:48:37 +00:00
R. RyanTM
d25ec8df03 golly: 3.1 -> 3.2
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/golly/versions.
2018-07-13 03:02:59 -07:00
Matthew Bauer
2171fc4d55
Merge pull request #42590 from TimPut/openmvsbuildfix
openmvs: build with CGAL 4.12
2018-06-28 22:33:40 -04:00
tim put
385114da68 openmvs: fix CGAL 4.12 dependency
patch executables with openMVS library path
2018-06-26 21:55:15 -06:00
tim put
a47a16a887 openmvg: 1.1 -> 1.3 2018-06-25 16:12:26 -06:00
Ryan Mulligan
e094cda74f simgrid: 3.17 -> 3.19.1 2018-05-28 06:01:17 -07:00
Yegor Timoshenko
4e049b2fd4 simgrid: cleanup 2018-05-25 15:48:28 -05:00
Matthew Bauer
02297beade treewide: add version to packages
Lots of packages are missing versions in their name. This adds them
where appropriate. These were found with this command:

 $ nix-env -qa -f. | grep -v '\-[0-9A-Za-z.-_+]*$' | grep -v '^hook$'

See issue #41007.
2018-05-25 15:48:05 -05:00
Maximilian Bosch
be53a0f2ef sasview: fix build (#40433)
The package breaks currently breaks with the following message:

```
fixed-output derivation produced path '/nix/store/5dh1mdj027ad8sprk12fqa5h5bpdxs5n-sasview' with sha256 hash '12k1w4yq1mzjxcp2cqb562c7cbwzhi54rsbmgi0fax0i1660q167' instead of the expected hash '05la54wwzzlkhmj8vkr0bvzagyib6z6mgwqbddzjs5y1wd48vpcx'
```

To fix the build the following changes were applied:

* Switched to latest master for now as the older releases have a broken
  `py.test` configuration and altering hashes.

* Added `checkPhase` which invokes `py.test` directly and drops
  duplicated files from `dist/tmpbuild`.

* Rebased the patches `pyparsing-fix.patch` and `local_config.patch` for
  the latest master revision.

Additionally refer to the discussion in #40381 for further reference.
2018-05-13 17:25:18 +02:00
Will Dietz
4b7b083bcb treewide: stdenv.lib.platforms.gnu -> ... gnu ++ linux
Include all linux platforms.
2018-04-30 18:12:10 -05:00
Lancelot SIX
8d58b1a0a0
Merge pull request #39360 from lsix/update_motu
motuclient: 1.4.00 -> 1.5.00
2018-04-25 11:46:19 +02:00
Lancelot SIX
9b5793790e
motuclient: 1.4.00 -> 1.5.00 2018-04-23 10:50:45 +02:00
Matthew Justin Bauer
853529b2ea
Merge pull request #38740 from r-ryantm/auto-update/cytoscape
cytoscape: 3.6.0 -> 3.6.1
2018-04-18 22:20:04 -05:00
xeji
d63702a473 openmvg: mark as broken 2018-04-12 23:04:02 +02:00
R. RyanTM
65e18bd38f cytoscape: 3.6.0 -> 3.6.1
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/cytoscape/versions.

These checks were done:

- built on NixOS
- ran ‘/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin/cytoscape -h’ got 0 exit code
- ran ‘/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin/cytoscape --help’ got 0 exit code
- found 3.6.1 with grep in /nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1
- directory tree listing: https://gist.github.com/8bad808238fc034c5394a80d8a5c1554
2018-04-11 01:12:34 -07:00
Matthew Justin Bauer
6a74718e00
Merge pull request #36852 from rprospero/sasview-for-pr
sasview: init at 4.1.2
2018-04-09 14:07:40 -05:00
Jörg Thalheim
1e9e19b2aa openmvs-unstable: 2017-05-01 -> 2018-05-26
fix build
2018-04-08 10:36:25 +01:00
Adam Washington
392def733b
Remove lint from Sasview package 2018-03-22 17:44:27 +00:00
Adam Washington
01c1385dec
Make xhtml2pdf its own package in python-packages
xhtml2pdf now uses the main package html5lib with just an override to
pull the correct version number.
2018-03-21 13:46:17 +00:00
volth
1e2eec169a gephi: build from sources 2018-03-19 08:45:24 +00:00
Adam Washington
73ed353d27 sasview: init at 4.1.2
Sasview is a data fitting and analysis package for small angle
scattering data.  More information can be found at
https://www.sasview.org.

There is some unfortunate cruft to this commit.  SasView uses the
xhtml2pdf python package, which has a specific version of html5lib as
a dependency.  This module manually loads that version into sasview.
I haven't made xhtml2pdf available as its own package due to these
circumstances.
2018-03-12 09:22:06 +00:00
Vladimír Čunát
565bd805e6
Merge branch 'master' 2018-03-05 14:53:27 +01:00
Ryan Mulligan
a4809a57e1 root: 6.10.08 -> 6.12.06
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/genreflex -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/genreflex --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/pq2 -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe -h` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe --help` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/xpdtest -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/xpdtest --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe -h` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe --help` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root-config --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root-config --version` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -V` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -v` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --version` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory version` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -h` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --help` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory help` and found version 6.12.06
- found 6.12.06 with grep in /nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06

cc "@veprbl"
2018-03-01 15:39:08 +01:00
Ryan Mulligan
75072efb4b tulip: 4.9.0 -> 5.1.0
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config -h` got 0 exit code
- ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config --help` got 0 exit code
- ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config help` got 0 exit code
- ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config --version` and found version 5.1.0
- found 5.1.0 with grep in /nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0

cc ""
2018-02-28 20:33:39 +00:00
Alexander V. Nikolaev
0acec7e984 treewide: transition mesa to libGLU_combined 2018-02-24 17:06:49 +02:00
adisbladis
a41d7b9ea1
Merge pull request #33839 from mimadrid/update/gephi-0.9.2
gephi: 0.9.1 -> 0.9.2
2018-01-15 01:10:52 +08:00
Miguel Madrid Mencía
eb21bf3d99
cytoscape: 3.5.1 -> 3.6.0 2018-01-13 23:21:49 +01:00
Miguel Madrid Mencía
111d4dbc06
gephi: 0.9.1 -> 0.9.2 2018-01-13 23:18:26 +01:00
MERCIER Michael
42ec4556bd Fix typo 2017-11-28 13:13:01 +01:00
MERCIER Michael
8fa00adf1a Add myself as maintainer 2017-11-27 17:58:49 +01:00
MERCIER Michael
0cace1fbd2 simgrid: 3.15 -> 3.17 + clean + add options 2017-11-27 17:50:25 +01:00
Michael Raskin
eaaaebe00a golly: 2.8 -> 3.1 2017-11-11 15:31:37 +01:00
Piotr Bogdan
8904ce343a fix source root locations.
These have changed following commit
c3255fe8ec.

See also:

- https://github.com/NixOS/nixpkgs/pull/31004
- https://github.com/NixOS/nixpkgs/pull/31106
2017-11-02 13:53:36 +00:00
Dmitry Kalinkin
ef2fc289a6
root: 6.10.04 -> 6.10.08 2017-10-20 00:59:21 -04:00
Orivej Desh
fda26c8476 Merge branch 'master' into staging
* master: (271 commits)
  pysmbc: clarify license
  pysmbc: fix license
  bazel: 0.5.4 -> 0.6.0 (#29990)
  googler: init at 3.3
  go: declare support for aarch64
  firefox-beta-bin: 56.0b5 -> 57.0b4
  spotify: 1.0.64.401.g9d720389-21 -> 1.0.64.407.g9bd02c2d-26
  gogs: 0.11.19 -> 0.11.29
  grafana: 4.5.1 -> 4.5.2
  mopidy-iris: 3.4.1 -> 3.4.9
  nextcloud: 12.0.2 -> 12.0.3
  haskell-json-autotype: jailbreak to fix build within LTS 9.x
  kore: fix up
  kore: init at 2.0.0
  glusterfs service: fix issues with useRpcbind
  tig: 2.2.2 -> 2.3.0
  haskell-hspec-core: enable test suite again
  hackage-packages.nix: automatic Haskell package set update
  librsvg: fix thumbnailer path
  awscli: 1.11.108 -> 1.11.162
  ...
2017-10-02 00:22:12 +00:00
Franz Pletz
d7d774deea gplates: mark as broken
(cherry picked from commit 5b09ca07b8)
2017-09-30 22:55:29 +03:00
Franz Pletz
1b56f7cbb4 openmodelica: mark as broken, unmaintained
(cherry picked from commit d9298e3a00)
2017-09-30 22:55:27 +03:00
John Ericson
531e4b80c9 misc pkgs: Basic sed to get fix pkgconfig and autoreconfHook buildInputs
Only acts on one-line dependency lists.
2017-09-21 15:49:53 -04:00
Dmitry Kalinkin
7c7ca7f017
root: add noSplash option 2017-08-30 19:56:53 -04:00
Dmitry Kalinkin
fd22d671ec root: 6.10.02 -> 6.10.04 2017-08-22 04:00:39 +02:00
Lancelot SIX
38f3153caa
motu-client: 1.0.8 -> 1.4.0 2017-08-09 10:08:14 +02:00
Silvan Mosberger
f5fa5fa4d6 pkgs: refactor needless quoting of homepage meta attribute (#27809)
* pkgs: refactor needless quoting of homepage meta attribute

A lot of packages are needlessly quoting the homepage meta attribute
(about 1400, 22%), this commit refactors all of those instances.

* pkgs: Fixing some links that were wrongfully unquoted in the previous
commit

* Fixed some instances
2017-08-01 22:03:30 +02:00
Dmitry Kalinkin
459e3864d2
root: 6.10.00 -> 6.10.02 2017-07-14 04:40:27 -04:00
Jörg Thalheim
ad42e5f6e5 Merge pull request #26795 from veprbl/root_6.10.00
root: 6.09.02 -> 6.10.00
2017-06-25 09:14:30 +01:00
Dmitry Kalinkin
ada12f46dc
root: 6.09.02 -> 6.10.00
also workaround #26197
2017-06-24 13:38:25 -04:00
Franz Pletz
b6cf652e08
boinc: 7.4.42 -> 7.8.0 2017-06-20 05:19:31 +02:00
Jörg Thalheim
ea706bd98b Merge pull request #25231 from veprbl/root_6.09.02
root: 6.08.02 -> 6.09.02
2017-05-20 17:37:43 +01:00
Matthew Daiter
093130f802 openmvs: init at current master (#25672)
* openmvs: init at current master

* openmvs: simplify expression

* openmvs: init at unstable-2017-05-01
2017-05-12 20:07:11 +01:00
mdaiter
fdd28b6fe0
openmvg: clarify Git version
fixes #25615
2017-05-09 09:39:41 +01:00
Frederik Rietdijk
183cada05a Merge pull request #25590 from mimadrid/update/cytoscape-3.5.1
cytoscape: 3.4.0 -> 3.5.1
2017-05-09 10:03:20 +02:00
mimadrid
0ed5b1c867
cytoscape: 3.4.0 -> 3.5.1 2017-05-07 23:05:59 +02:00
Matthew Daiter
c6385eb0f5 openmvg: init at v1.1 2017-05-05 15:51:32 +02:00
Dmitry Kalinkin
be9c0e8b7e
root: 6.08.02 -> 6.09.02
This also fixes breakage on darwin due to LLVM4.0 migration.

I had to enable opengl because otherwise macOS build is broken.
See root commit 23f8871c7 ('Do not include OpenGL directly but use our
TGLIncludes for that purpose.')

I've enabled xml because TUnfold depends on it.
2017-04-26 16:34:14 -04:00
Vladimír Čunát
9fc61d0db5
simgrid: fixup sandboxed build after update #24915 2017-04-16 14:15:32 +02:00
Sophia Gold
76b8ce3023 simgrid: 3.11.1 -> 3.15 2017-04-15 08:22:02 +02:00
Michael Raskin
47183c813e golly-beta: init at 2.9b2 to test GL issues 2017-03-22 17:02:55 +01:00
Ricardo Ardissone
e17d3d4ef1 gplates: use boost 160
update 161 changed reference parameters for optional
https://hydra.nixos.org/build/49707856/nixlog/1
http://www.boost.org/doc/libs/1_61_0/libs/optional/doc/html/boost_ooptional/relnotes.html
2017-03-08 13:04:34 +02:00
Robin Gloster
bb9a37a2a5
ikarus: remove
unmaintained, only works on 32 bit
2017-03-03 13:43:04 +01:00
Benno Fünfstück
253d736398 boinc: fix location of /etc in $out
Looks like the latest version no longer requires the patch, and the patch instead resulted in
/etc files being installed to `$out/$out/etc` instead of `$out/etc`
2017-03-03 12:58:43 +01:00
Robin Gloster
c1866cade9
libsForQt5.qmltermwidget: fix build 2017-03-02 14:13:35 +01:00
Katona László
085502dd80 cytoscape: fixed issue with startup script 2017-03-01 21:46:49 +01:00
Frederik Rietdijk
2832472da0 golly: use python2 2017-02-10 09:35:10 +01:00
Daiderd Jordan
5a67b130b9
Merge branch 'master' into staging 2017-01-02 00:54:17 +01:00
Dmitry Kalinkin
c7bcb99ff2
root: 6.04.18 -> 6.08.02
This relies on
e9d60c56 ('libc++3.7: fix to use with modern compilers')
2017-01-01 17:52:03 -05:00
Pascal Wittmann
039e90c9d3
fityk: 1.3.0 -> 1.3.1 2017-01-01 18:19:39 +01:00
Ricardo Ardissone
662aa495df gplates: init at 2.0.0 2016-12-16 22:29:53 -02:00
Dmitry Kalinkin
9434ec5441
root: fix environment setup
1) s/envHook/postHook/
2) patch to not set $p that fixes nested ```nix-shell -p root``` calls
2016-10-29 14:47:32 -04:00
Vladimír Čunát
4328629bf8 treewide: fix meta evaluation
There is no `stdenv.maintainers`. /cc @veprbl.
2016-10-22 12:05:23 +02:00
Dmitry Kalinkin
ef96b48659
root: s/python/python2/ 2016-10-21 15:47:38 -04:00
Dmitry Kalinkin
59a8aff8e6
root: add veprbl to maintainers 2016-10-21 13:30:30 -04:00
Joachim F
e22dd2f6c5 Merge pull request #18740 from chris-martin/tulip-4-9
Tulip: 4.1.0 -> 4.9.0
2016-09-20 14:34:17 +02:00
Chris Martin
08e5949235 tulip: 4.1.0 -> 4.9.0 2016-09-18 15:24:29 -04:00
Dmitry Kalinkin
7b9deaba81 root: add setup-hook 2016-09-18 04:45:18 -04:00
Nikolay Amiantov
4748709926 Merge commit 'refs/pull/18498/head' of git://github.com/NixOS/nixpkgs 2016-09-13 12:51:34 +03:00
Kirill Boltaev
bccd75094f treewide: explicitly specify gtk and related package versions 2016-09-12 18:26:06 +03:00
Dmitry Kalinkin
5646c2aba6 root: add support for x86_64-darwin
1) add pcre dependency (for some reason builtin_pcre doesn't work)
2) Disable dependencies that are currently not supported by the
expression.  Most users should not need those. These are disabled to
prevent cmake from picking them up from system and causing impurities.
Once there is a user who needs these they will have to update the
expression.
3) disable some OSX detection code that relies on /usr/bin/sw_vers
that chooses c++ library, silences warnings and sets macosx-version-min.
macosx-version-min is already set by nix using MACOSX_DEPLOYMENT_TARGET
environment variable.
2016-09-11 17:29:13 -04:00
Domen Kožar
9e363a752f openmodelica: enable parallel building
(cherry picked from commit 261d51971a)
Signed-off-by: Domen Kožar <domen@dev.si>
2016-09-05 18:06:28 +02:00
Tuomas Tynkkynen
b87a2245b1 root: Fix libc dev reference 2016-08-31 12:54:28 +03:00
Robin Gloster
9f80e55428
openmodelica: disable format hardening 2016-08-27 21:54:17 +00:00
Michael Raskin
14736fcf4c openmodelica: fix libgfortran.so search 2016-08-20 21:52:21 +02:00
Michael Raskin
d1951974df golly: 2.7 -> 2.8 2016-08-11 17:57:35 +02:00
Tuomas Tynkkynen
21f17d69f6 treewide: Add lots of meta.platforms
Build-tested on x86_64 Linux & Mac.
2016-08-02 21:42:43 +03:00
Dmitry Kalinkin
4449ecb617 root: 6.04.16 -> 6.04.18 (#17265)
root: compile against external gsl

Revert "Revert "root: enable parallel building""

This reverts commit ee1a10ee6b.

ROOT has no problems with parallel build. The problems that caused the
original commit were not related to parallel building.
2016-07-30 01:41:37 +01:00
Ta'iř sj Ořit
3832ebde8b gephi: init at 0.9.1 (#16071) 2016-06-26 22:40:00 +02:00
mimadrid
9b7a53d9cb
cytoscape: init at 3.4.0
Closes #16197
2016-06-16 15:47:21 +02:00
Tuomas Tynkkynen
f1d83444a5 openmodelica: Use makeLibraryPath 2016-06-07 21:18:02 +03:00
Tuomas Tynkkynen
bac26e08db Fix lots of fetchgit hashes (fallout from #15469) 2016-06-03 17:17:08 +03:00
Vladimír Čunát
ee1a10ee6b Revert "root: enable parallel building"
This reverts commit 2991fdca52.
Hydra builds often report missing various files.
2016-05-26 16:27:59 +02:00
Nicolò Balzarotti
c1c0c99af3 yarp: 2.3.64 -> 2.3.65 (#15662) 2016-05-24 13:30:52 +02:00
Dmitry Kalinkin
088601cb51 root: fix chrooted build, workaround 491f7f017c (cmake: set LIBDIR and INCLUDEDIR for multiple outputs) 2016-04-25 17:38:19 -04:00
Dmitry Kalinkin
f2200369e5 root: fix NixOS build, build with lzma from nix, update homepage url 2016-04-20 01:41:46 -04:00
Dmitry Kalinkin
baded4ea96 root: 5.34.15 -> 6.04.16 2016-04-17 22:59:31 -04:00
Lancelot SIX
8f4a7d6c4c pkgs.motuclient: move application away from pythonPackages 2016-03-02 09:41:02 +01:00
=
a5ed58445f yarp (+ libace): init at 2.3.64 2016-02-24 22:08:29 +01:00
Vladimír Čunát
88c9f8b574 xlibs: replace occurrences by xorg
This seems to have been confusing people, using both xlibs and xorg, etc.
- Avoided renaming local (and different) xlibs binding in gcc*.
- Fixed cases where both xorg and xlibs were used.
Hopefully everything still works as before.
2015-09-15 12:54:34 +02:00
Vladimír Čunát
a839a48b0a root: fix build by -lX11
The pkgconfig change didn't help, but I'd leave it in.
2015-09-01 08:23:00 +02:00
lethalman
8230f0a379 Merge pull request #8908 from devhell/boinc
boinc: 7.4.14 -> 7.4.42
2015-07-30 18:52:34 +02:00
devhell
8d41ccf6f9 boinc: 7.4.14 -> 7.4.42
As it turns out BOINC moved their git repository to Github sometime
shortly after the first update to this derivation. Their wiki change
makes this quite clear:
https://boinc.berkeley.edu/trac/wiki/SourceCodeGit?action=diff&version=54

Slight refactor and the changelog for this release can be found here:
https://boinc.berkeley.edu/trac/wiki/VersionHistory

Build and run were successful.
2015-07-28 22:01:26 +01:00
Sergey Mironov
80d6b708ac openmodelica: Fix runtime PATHs using wrapProgram, fixes #8949 2015-07-23 20:42:42 +02:00
Sergey Mironov
9bb0fee487 openmodelica: add expression
openmodelica.nix: add git to the list of dependencies

openmodelica: generate library sourcelist with hashes

openmodelica: generate library sources (part 2)

openmodelica: fix fakegit

openmodelica: fix libraries issues

openmodelica: add GTK

openmodelica: successful build
2015-07-23 20:42:35 +02:00
Pascal Wittmann
cf13409313 fityk: update 1.2.9 to 1.3.0 2015-06-24 11:15:44 +02:00
Michael Raskin
59126fb3f8 Update golly 2015-06-14 11:22:07 +03:00
Ludovic Courtès
41b53577a8 unmaintain a bunch of packages 2015-01-13 22:33:49 +01:00
Vladimír Čunát
7ce485ff0f root: fix build by upstream patch
Also refactor the expression a little.
2014-12-10 13:03:01 +01:00
Michael Raskin
98878bc5a0 Link Golly against libperl and libpython so it finds them in runtime 2014-11-10 12:31:29 +03:00
Mateusz Kowalczyk
57a84615c6 vite: fix and update package 2014-11-09 12:59:51 +00:00
Mateusz Kowalczyk
007f80c1d0 Turn more licenses into lib.licenses style
Should eval cleanly, as far as -A tarball tells me.

Relevant: issue #2999, issue #739
2014-11-06 00:48:16 +00:00
Michael Raskin
9ae10b2cac Update golly 2014-09-24 14:07:00 +04:00
Pascal Wittmann
038c71a11a boinc: update from 7.2.42 to 7.4.14 (fixes CVE-2013-2298) 2014-09-01 22:51:04 +02:00
Bjørn Forsman
c9baba9212 Fix many package descriptions
(My OCD kicked in today...)

Remove repeated package names, capitalize first word, remove trailing
periods and move overlong descriptions to longDescription.

I also simplified some descriptions as well, when they were particularly
long or technical, often based on Arch Linux' package descriptions.

I've tried to stay away from generated expressions (and I think I
succeeded).

Some specifics worth mentioning:
 * cron, has "Vixie Cron" in its description. The "Vixie" part is not
   mentioned anywhere else. I kept it in a parenthesis at the end of the
   description.

 * ctags description started with "Exuberant Ctags ...", and the
   "exuberant" part is not mentioned elsewhere. Kept it in a parenthesis
   at the end of description.

 * nix has the description "The Nix Deployment System". Since that
   doesn't really say much what it is/does (especially after removing
   the package name!), I changed that to "Powerful package manager that
   makes package management reliable and reproducible" (borrowed from
   nixos.org).

 * Tons of "GNU Foo, Foo is a [the important bits]" descriptions
   is changed to just [the important bits]. If the package name doesn't
   contain GNU I don't think it's needed to say it in the description
   either.
2014-08-24 22:31:37 +02:00
Thomas Strobel
58b4b98377 Add application for scientific data analysis: fityk 2014-08-14 01:57:27 +02:00
Michael Raskin
cee539cc9c Allow optional functionality in SimGrid 2014-08-12 14:09:54 +04:00
Michael Raskin
2e84472d60 Update SimGrid 2014-08-12 05:26:33 +04:00
Eelco Dolstra
8a7f3c3618 Mark a bunch of packages as broken or not supported on Darwin 2014-08-08 17:59:02 +02:00
Peter Simons
d0ca8c237e Fix broken license references. 2014-07-28 11:43:20 +02:00
Mateusz Kowalczyk
7a45996233 Turn some license strings into lib.licenses values 2014-07-28 11:31:14 +02:00
Michael Raskin
01d9778625 Update boinc 2014-07-04 22:18:49 +04:00
Eric Kow
9e457049e4 megam: New package
Maximum Entropy (GA) Model Optimization Package
2014-04-15 14:00:56 +01:00
Peter Simons
19cb32a36c root: update from 5.34.14 to 5.34.15 2014-03-03 11:10:25 +01:00
Peter Simons
2991fdca52 root: enable parallel building 2014-01-20 18:26:32 +01:00
Peter Simons
baeb19d0ce root: clean up meta section and move build into 'science/misc' section 2014-01-20 18:24:27 +01:00
Eelco Dolstra
a0e21fd1ca Mark more packages as broken 2013-11-04 21:11:00 +01:00
Ludovic Courtès
2e937c437a unmaintain several packages 2013-08-16 23:45:01 +02:00
Evgeny Egorochkin
74491ea24b boinc: fix url 2013-07-19 08:25:00 +03:00
Evgeny Egorochkin
d26e46acd6 golly: fix version to match tarball. this time for sure :) 2013-07-18 03:55:56 +03:00
Evgeny Egorochkin
d0b4c8bfaa gktspell: version bump to 2.0.16 because the old one has disappeared 2013-07-14 03:09:34 +03:00
Evgeny Egorochkin
33dac78323 golly: fix version to match tarball 2013-07-14 02:08:49 +03:00
Vladimír Čunát
0d72174dbd Merge branch stdenv-updates into x-updates
x-updates is supposed to merge after stdenv-updates, so let's test it

Conflicts:
	pkgs/development/libraries/gtk+/2.x.nix (both updated, taking newer)
	pkgs/development/libraries/mesa/default.nix (taking nativeBuildInputs)
2013-02-21 12:43:00 +01:00
Vladimír Čunát
c55f5ae19d tulip: update to fix compilation with libpng-1.6 2013-02-16 16:16:32 +01:00
Peter Simons
b33ad366a1 Merge branch 'master' into stdenv-updates. 2013-01-11 15:46:10 +01:00
Lluís Batlle i Rossell
430957b020 boinc: fix it; the binaries didn't start. 2013-01-08 23:28:39 +01:00
Lluís Batlle i Rossell
8de96cb04d boinc: updating to 7.0.44
now it builds.

I started to use fetchgit instead of fetchsvn, because the upstream
doc pages talk about git more than svn.
2013-01-08 23:28:39 +01:00
Eelco Dolstra
ab3eeabfed Rename buildNativeInputs -> nativeBuildInputs
Likewise for propagatedBuildNativeInputs, etc.  "buildNativeInputs"
sounds like an imperative rather than a noun phrase.
2012-12-28 19:20:09 +01:00
Michael Raskin
8a1f312621 Update golly 2012-12-04 10:10:28 +04:00
Michael Raskin
e6fa414b64 Update and fix Tulip
svn path=/nixpkgs/trunk/; revision=32613
2012-02-27 07:10:05 +00:00
Yury G. Kudryashov
7e320a7043 State qt version (3/4) in packages, not in all-packages.nix
svn path=/nixpkgs/trunk/; revision=31406
2012-01-07 17:06:49 +00:00
Yury G. Kudryashov
995d3d3e03 tulip-3.6.1
svn path=/nixpkgs/trunk/; revision=31216
2012-01-02 18:36:04 +00:00
Michael Raskin
d5c702939c Update Golly
svn path=/nixpkgs/trunk/; revision=30874
2011-12-13 21:00:42 +00:00
Lluís Batlle i Rossell
58e9385e70 Downgrading boinc to the last stable version.
svn path=/nixpkgs/trunk/; revision=29808
2011-10-13 08:58:45 +00:00
Lluís Batlle i Rossell
c67c7d49b0 Boinc wanted to be told to link to libX11
svn path=/nixpkgs/trunk/; revision=29713
2011-10-07 19:01:27 +00:00
Lluís Batlle i Rossell
80d397413d Boinc can even run, but only if placed in the proper (writeable) path.
svn path=/nixpkgs/trunk/; revision=29712
2011-10-07 19:01:19 +00:00
Lluís Batlle i Rossell
fefaa7a6ea Adding boinc. It installs. I don't know how to use it.
svn path=/nixpkgs/trunk/; revision=29704
2011-10-06 20:25:05 +00:00
Michael Raskin
b973f98afa Make tulip run without hassle. Unfortunately, some operations repeatably crash tulip even when built vs Qt4.6
svn path=/nixpkgs/trunk/; revision=27570
2011-07-01 09:53:11 +00:00
Michael Raskin
a4be010d31 Update Tulip
svn path=/nixpkgs/trunk/; revision=27566
2011-07-01 07:01:46 +00:00
Ludovic Courtès
e60ba9135a SimGrid 3.5.
svn path=/nixpkgs/branches/stdenv-updates/; revision=25180
2010-12-17 17:48:12 +00:00
Ludovic Courtès
35cbabdab4 ViTE from SVN.
svn path=/nixpkgs/trunk/; revision=22696
2010-07-22 09:01:42 +00:00
Michael Raskin
b1eb6c96a8 Update Tulip. Unicode support should be available now.
svn path=/nixpkgs/trunk/; revision=22484
2010-07-06 07:25:07 +00:00