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3a74152beb
commitc64fa8fe9d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Mar 7 11:24:20 2024 +0000 opt to easily turn off restart debug output commit48c5387291
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Mar 7 09:22:45 2024 +0000 binary store count (#129) Fix issue in binary store object count commit769193703a
Merge:308442f2
23062c3f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Mar 7 09:16:45 2024 +0000 Merge branch 'restart' into main commit308442f201
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Mar 7 09:14:33 2024 +0000 Merge from dg dev main (#128) * updating Tethys help * added help details server connection & calibration * Reporting outputs to user Use Pamguard WarnOnce system to show a message of success or failure after attempting to output to Tethys. * Removing empty fields Start of implementation of code that can remove empty fields from objects before they are written. * More help documentation Continued writing general export help. Added new css style Added image * Fix type in Deployment export * Prevent single deployment export For now, disable the option to export a single Deployment document for multiple recording periods. * System to search species codes Search the ITIS species codes in Tethys to find ITIS codes. Search can be on a common or scientific name. * Data blocks help + species codes More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs. Includes supporting images * Improved dialog for finding species codes Now has a progress bar to block GUI while searching database. * Add species codes TOC in help * Documented new species search in help * Nilus Checker Can check a Nilus class to see if it's missing required objects and be used to remove empty fields (e.g. zero length strings) from an object. * fixed anchor html problem * Messing around with checking of required fields in nilus objects. * split Tethys help files into smaller chunks * Update button enablers And reinstate output of a single deployment document, with non-recording periods stores in the QA section And update help TOC for latest help documents. --------- Co-authored-by: Marie <marie.roch@sdsu.edu> commit23062c3ff4
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Mar 4 13:59:09 2024 +0000 Update PamController.java add in debug output at start and stop commit85b47c86af
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Mar 4 13:05:56 2024 +0000 exception handling A bit more exception handling in click train detector and output of a version 10aa/other commite3ffd56f69
Merge:1200b13f
e6c2f325
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Mar 4 12:28:42 2024 +0000 Merge branch 'restart' of https://github.com/douggillespie/PAMGuard into restart commite6c2f325b2
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sat Mar 2 10:43:41 2024 +0000 Binary store Fix err in binary footer where count of objects also included the count of noise measurements. commit45b99273fa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Feb 27 19:09:58 2024 +0000 Restore single param call into PamParameterSet.autoGenerate commitc36ad2a33a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Feb 27 15:55:02 2024 +0000 Fix settings load. Problems in viewer mode with long (>50char) settings names which don't get fully stored in the database. Fixed by only looking at the start of the name. Better to not use such long names. commit2721095a03
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Feb 27 14:08:22 2024 +0000 Fix compound data selector V2.02.10b also a bug in logger forms if malformed UDF's commit1200b13f95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Feb 23 15:53:00 2024 +0000 Exception handling in CTD commit156952bafe
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Feb 22 17:40:45 2024 +0000 Update MHTClickTrainAlgorithm.java Synchronize calls into MHT Algorithm across threads (can mess up during restarts otherwise) commite491028ef7
Merge:d2263bbb
21b4bc13
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Feb 15 16:52:29 2024 +0000 Merge pull request #66 from PAMGuard/main merge from main commitd2263bbba5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Feb 15 16:48:33 2024 +0000 Functions for better restarting after buffer overflow. commit21b4bc130d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Feb 9 11:53:35 2024 +0000 Hydrophone data loading Change how hydrophone data are loaded in viewer. Don't load ALL data. Load the loading period + some before the load period which will be one minute of data PLUS an extra n*2 data before that extra minute where n is the number of hydrophones. commite52701353a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Feb 5 13:34:15 2024 +0000 Fix data integrity bug Fix of bug that 'fixed' event start and end times in database for linked parent / child event tables. Error was caused by a mix up between ParentID and ParentUID fields. commit66b73c45e2
Merge:0dc47fcb
9fe8e353
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Feb 2 09:08:19 2024 +0000 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main commit0dc47fcb0b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Feb 2 09:07:55 2024 +0000 click display arrangement Added options to NOT automatically rearrange all the windows in the click display every time the display size changes commit9609546602
Merge:82e02a21
67e58416
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Jan 30 15:01:04 2024 +0000 Merge pull request #65 from douggillespie/Tethys Tethys commit67e5841668
Merge:6b184529
9fe8e353
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Jan 30 15:00:00 2024 +0000 Merge pull request #64 from PAMGuard/main Merge from main commit9fe8e35322
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Jan 30 14:58:50 2024 +0000 MErge from dg (#127) * updating Tethys help * added help details server connection & calibration * Reporting outputs to user Use Pamguard WarnOnce system to show a message of success or failure after attempting to output to Tethys. * Removing empty fields Start of implementation of code that can remove empty fields from objects before they are written. * More help documentation Continued writing general export help. Added new css style Added image * Fix type in Deployment export * Prevent single deployment export For now, disable the option to export a single Deployment document for multiple recording periods. * System to search species codes Search the ITIS species codes in Tethys to find ITIS codes. Search can be on a common or scientific name. * Data blocks help + species codes More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs. Includes supporting images * Improved dialog for finding species codes Now has a progress bar to block GUI while searching database. * Add species codes TOC in help * Documented new species search in help * Nilus Checker Can check a Nilus class to see if it's missing required objects and be used to remove empty fields (e.g. zero length strings) from an object. * fixed anchor html problem * Messing around with checking of required fields in nilus objects. * split Tethys help files into smaller chunks * Update button enablers And reinstate output of a single deployment document, with non-recording periods stores in the QA section And update help TOC for latest help documents. --------- Co-authored-by: Marie <marie.roch@sdsu.edu> commit1c532906ca
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Jan 30 14:57:38 2024 +0000 Merge from dg (#126) * updating Tethys help * added help details server connection & calibration * Reporting outputs to user Use Pamguard WarnOnce system to show a message of success or failure after attempting to output to Tethys. * Removing empty fields Start of implementation of code that can remove empty fields from objects before they are written. * More help documentation Continued writing general export help. Added new css style Added image * Fix type in Deployment export * Prevent single deployment export For now, disable the option to export a single Deployment document for multiple recording periods. * System to search species codes Search the ITIS species codes in Tethys to find ITIS codes. Search can be on a common or scientific name. * Data blocks help + species codes More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs. Includes supporting images * Improved dialog for finding species codes Now has a progress bar to block GUI while searching database. * Add species codes TOC in help * Documented new species search in help * Nilus Checker Can check a Nilus class to see if it's missing required objects and be used to remove empty fields (e.g. zero length strings) from an object. * fixed anchor html problem * Messing around with checking of required fields in nilus objects. * split Tethys help files into smaller chunks * Update button enablers And reinstate output of a single deployment document, with non-recording periods stores in the QA section And update help TOC for latest help documents. --------- Co-authored-by: Marie <marie.roch@sdsu.edu> commit82e02a21b3
Merge:8b57a398
c4192a73
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Jan 30 14:56:43 2024 +0000 Merge pull request #63 from PAMGuard/main MErge from main commitc4192a7323
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Jan 30 14:51:29 2024 +0000 Version 2.02.10 final commit of updated version info for release commit5466914d4e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Jan 30 11:55:34 2024 +0000 Merge from dev branch (#125) * updating Tethys help * added help details server connection & calibration * Reporting outputs to user Use Pamguard WarnOnce system to show a message of success or failure after attempting to output to Tethys. * Removing empty fields Start of implementation of code that can remove empty fields from objects before they are written. * More help documentation Continued writing general export help. Added new css style Added image * Fix type in Deployment export * Prevent single deployment export For now, disable the option to export a single Deployment document for multiple recording periods. * System to search species codes Search the ITIS species codes in Tethys to find ITIS codes. Search can be on a common or scientific name. * Data blocks help + species codes More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs. Includes supporting images * Improved dialog for finding species codes Now has a progress bar to block GUI while searching database. * Add species codes TOC in help * Documented new species search in help * Nilus Checker Can check a Nilus class to see if it's missing required objects and be used to remove empty fields (e.g. zero length strings) from an object. * fixed anchor html problem * Messing around with checking of required fields in nilus objects. * split Tethys help files into smaller chunks * Update button enablers And reinstate output of a single deployment document, with non-recording periods stores in the QA section And update help TOC for latest help documents. --------- Co-authored-by: Marie <marie.roch@sdsu.edu> commit8b57a3982a
Merge:f4993425
cb0d191c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Jan 30 11:54:17 2024 +0000 Merge pull request #62 from PAMGuard/main Update README.html commitf4993425b5
Merge:dacfab07
6b184529
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Jan 30 11:52:32 2024 +0000 Merge pull request #61 from douggillespie/Tethys TethysMerge in from Tetthys commitcb0d191c08
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Jan 29 20:50:07 2024 +0000 Update README.html Fix problems of weird characters in readme.html commit6b1845293c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Jan 29 16:54:24 2024 +0000 Update button enablers And reinstate output of a single deployment document, with non-recording periods stores in the QA section And update help TOC for latest help documents. commit810ec67077
Author: Marie <marie.roch@sdsu.edu> Date: Fri Jan 26 19:56:45 2024 -0800 split Tethys help files into smaller chunks commitdacfab07f5
Merge:a6765d72
53ca798f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 26 10:02:00 2024 +0000 Merge pull request #60 from PAMGuard/main Correct sorting of input sound files commit53ca798f1b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 26 09:57:57 2024 +0000 Correct sorting of input sound files commit88be6ffe2e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Jan 25 18:04:57 2024 +0000 Messing around with checking of required fields in nilus objects. commitfe33930ca8
Author: Marie <marie.roch@sdsu.edu> Date: Wed Jan 24 11:50:20 2024 -0800 fixed anchor html problem commitfdfa9a20d8
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Jan 24 16:32:30 2024 +0000 Nilus Checker Can check a Nilus class to see if it's missing required objects and be used to remove empty fields (e.g. zero length strings) from an object. commitb78bbe8b9e
Merge:c0080ae4
a6765d72
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Jan 24 14:50:22 2024 +0000 Merge pull request #59 from douggillespie/main merge from main commita6765d72b1
Merge:efdf17f6
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Jan 24 14:46:39 2024 +0000 Merge pull request #58 from PAMGuard/main Remove comments in split positioner commit5fcd360737
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Jan 24 14:46:05 2024 +0000 Remove comments in split positioner commitc0080ae4f4
Merge:f1bb6e4c
efdf17f6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Jan 24 14:37:24 2024 +0000 Merge remote-tracking branch 'origin/main' into Tethys Conflicts: src/help/JavaHelpSearch/DOCS src/help/JavaHelpSearch/DOCS.TAB src/help/JavaHelpSearch/OFFSETS src/help/JavaHelpSearch/POSITIONS src/help/JavaHelpSearch/SCHEMA src/help/JavaHelpSearch/TMAP src/help/utilities/tethys/docs/tethys_quickstart.html commitf1bb6e4c0c
Author: Marie <marie.roch@sdsu.edu> Date: Tue Jan 23 14:33:50 2024 -0800 Documented new species search in help commit971165b72e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Jan 23 11:12:54 2024 +0000 Add species codes TOC in help commit3d7224eb93
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Jan 22 18:04:57 2024 +0000 Improved dialog for finding species codes Now has a progress bar to block GUI while searching database. commit7d30b303e7
Author: Marie <marie.roch@sdsu.edu> Date: Sun Jan 21 15:24:13 2024 -0800 Data blocks help + species codes More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs. Includes supporting images commitbaff8d140c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sun Jan 21 21:35:34 2024 +0000 System to search species codes Search the ITIS species codes in Tethys to find ITIS codes. Search can be on a common or scientific name. commit54cb0d1b08
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sun Jan 21 17:01:10 2024 +0000 Prevent single deployment export For now, disable the option to export a single Deployment document for multiple recording periods. commit522253b489
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sun Jan 21 16:25:03 2024 +0000 Fix type in Deployment export commit98bc7587b5
Merge:c8bc943f
e0392de9
Author: Marie <marie.roch@sdsu.edu> Date: Sat Jan 20 20:01:19 2024 -0800 Merge branch 'Tethys' of https://github.com/douggillespie/PAMGuard into Tethys commitc8bc943ff7
Author: Marie <marie.roch@sdsu.edu> Date: Sat Jan 20 20:01:05 2024 -0800 More help documentation Continued writing general export help. Added new css style Added image commite0392de9c7
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 19 17:29:12 2024 +0000 Removing empty fields Start of implementation of code that can remove empty fields from objects before they are written. commit65300d719a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 19 16:29:41 2024 +0000 Reporting outputs to user Use Pamguard WarnOnce system to show a message of success or failure after attempting to output to Tethys. commitfa02c9826c
Merge:3f2e4239
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Author: Marie <marie.roch@sdsu.edu> Date: Thu Jan 18 19:37:29 2024 -0800 Merge branch 'Tethys' of https://github.com/douggillespie/PAMGuard into Tethys commit3f2e4239b0
Author: Marie <marie.roch@sdsu.edu> Date: Thu Jan 18 19:37:17 2024 -0800 added help details server connection & calibration commitefdf17f651
Merge:02f1889e
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Jan 18 09:39:55 2024 +0000 Merge pull request #57 from PAMGuard/main merge from main commite5fda7f72a
Merge:3ed9be4b
02f1889e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Jan 18 09:39:45 2024 +0000 Merge branch 'main' into main commit3ed9be4bfd
Merge:42b72960
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Jan 18 09:36:56 2024 +0000 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main commit42b7296075
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Jan 18 09:36:10 2024 +0000 Hide Tethys module and remove text output in splitpanepositioner commit02f1889e39
Merge:0bc3968d
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Jan 18 09:33:26 2024 +0000 Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main Conflicts: src/binaryFileStorage/BinaryStore.java commit43811c1f9b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Jan 18 09:31:00 2024 +0000 Merge from DG (#124) * claspath update * Batch processing Adding functionality for offline task batch processing. commit52bbff36e5
Merge:0c035aa0
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Jan 18 09:29:50 2024 +0000 Merge pull request #56 from PAMGuard/main Merge from main commit0bc3968dc8
Merge:52cc8c71
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Jan 17 21:28:02 2024 +0000 Fix err in binary store commit0c035aa0fe
Merge:52cc8c71
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Jan 17 21:28:02 2024 +0000 Merge branch 'main' of https://github.com/douggillespie/PAMGuard commit52cc8c7177
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Jan 17 21:24:04 2024 +0000 Batch processing Adding functionality for offline task batch processing. commitb373e169f2
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Jan 17 21:13:14 2024 +0000 updating Tethys help (#123) commit5d83af1d42
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Jan 17 21:11:31 2024 +0000 updating Tethys help (#122) commit7efc824226
Merge:d05cecaf
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Jan 17 21:11:13 2024 +0000 Merge branch 'main' into Tethys commita3a74adb78
Merge:ac1a7f87
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Jan 17 14:37:30 2024 +0000 Merge pull request #55 from PAMGuard/main MErge from main commitd05cecaf8b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 12 18:57:38 2024 +0000 updating Tethys help commit7a1c697319
Merge:21fa4aff
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 12 15:41:54 2024 +0000 Merge remote-tracking branch 'origin/main' into Tethys Conflicts: pom.xml src/PamController/PamguardVersionInfo.java commitbb17d384b3
Merge:031f4c7a
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 12 15:34:05 2024 +0000 Merge branch 'Tethys' into main commitac1a7f87ac
Merge:133da119
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 12 15:29:05 2024 +0000 Merge pull request #53 from PAMGuard/main changes from main commit031f4c7ab4
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 12 15:28:23 2024 +0000 V 2.02.09aa with click marking bug fix commit217283c704
Merge:4856a827
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 12 11:58:31 2024 +0000 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard commit4856a827df
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 12 11:57:11 2024 +0000 click labelling fixed a couple of problems in click labelling (Viewer mode) when clics were reassigned to different events. commitdf178a4122
Merge:782057c0
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 12 10:16:35 2024 +0000 Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main commit133da119e0
Merge:f097ddce
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 12 10:16:12 2024 +0000 Merge pull request #52 from PAMGuard/main Merge from main commit46d01e62db
Merge:0e5bca51
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 12 10:16:00 2024 +0000 Merge branch 'main' into main commit0e5bca5198
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 12 10:11:21 2024 +0000 Update X3 lib to 2.2.7 commit21fa4aff07
Merge:73810b85
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sat Dec 30 18:50:58 2023 +0000 Merge branch 'Tethys' of https://github.com/douggillespie/PAMGuard.git into Tethys Conflicts: src/tethys/swing/TethysMainPanel.java commit73810b85bf
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sat Dec 30 18:48:24 2023 +0000 use new diider location memory commit7a5e8f1031
Merge:e48eb002
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sat Dec 30 17:39:28 2023 +0000 Merge branch 'main' into Tethys Conflicts: pom.xml src/PamController/PamguardVersionInfo.java commite48eb00204
Merge:70fbeaaf
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sat Dec 30 17:37:02 2023 +0000 Merge remote-tracking branch 'upstream/main' into Tethys Conflicts: pom.xml src/loggerForms/FormsDataDisplayTable.java commit70fbeaafde
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sat Dec 30 17:32:57 2023 +0000 work on deployment wizards commit782057c020
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sat Dec 30 17:28:23 2023 +0000 claspath update commit716eb1faa7
Merge:c63fb3f3
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sat Dec 30 17:26:43 2023 +0000 Merge branch 'Tethys' of https://github.com/douggillespie/PAMGuard into Tethys commitc63fb3f341
Merge:56bab82b
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sat Dec 30 17:07:17 2023 +0000 Merge branch 'main' into Tethys Conflicts: src/loggerForms/FormsDataDisplayTable.java commitf097ddce45
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sat Dec 30 17:01:46 2023 +0000 Split pane positioner Handy little class for remembering and restoring the positions of jSplitPane's commitf5c3ce06ce
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Dec 29 17:55:30 2023 +0000 Database opening from Explorer Sorted so that a viewer database can be opened by right clicking on a sqlite3 file. Requires updated installer to make appropriate registry changes. Will be in 2.02.10 commite29f6f0589
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Dec 22 13:38:18 2023 +0000 Fix Effort null pointers Trap a coupld of null pointer exceptions which get thrown when there are no acoustic data. commit56bab82be3
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 21 18:34:58 2023 +0000 POM Excludes signature files Updated POM file to correctly exclude signature files which prevented PAMGuard from running from the installed version (unless these were manually removed from the jar file). commit99aa3f342c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 21 17:07:23 2023 +0000 Update nilus and javaclient Updated java client and nilus jar builds for Maven. commitf4a42d2bb2
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 21 11:22:01 2023 +0000 update pom to groupid tethys commit1b8bb14e9d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Dec 20 16:47:18 2023 +0000 Pre release V2.02.09f With release notes for V2.02.10 which is coming soon ... commitf9a0716c0f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Dec 20 14:51:10 2023 +0000 Updates from DG (#120) * Stop command small change so command is available as a constant * Lots of small updates to enable opening of a secondary configuration for batch processing control. * Fix user input bug in viewer which created exponential copies of user comments! * Adding TAST trigger alarm action To be competed when GW provide correct string for interface * Echo offline detection Fix up affected datablocks for offline echo detection * fix module import System for importing modules from other psfx files was not working. Probably wasn't working for quite some time. Now fixed. * Bug fixes to Match Template classifier 1) When a large template was imported only 1: fftLength of the mathc waveform was used and so clicks would be correlated with noise. The peak of the template is now used when the peak search function is selected. 2) The plus button in the tab pane had disappeared. 3) Seems like the decimators were the wrong round. So the waveforms were using an up sample function when they should have been using a decimator function. and vice versa...major bug when using different sample rates! * Fix merge Merged in a single commit from Jamies fork that had updates to the template classifier. Then had to make a few changes to get it working with other changes J had made that must have been in other commits. * Logger forms viewer Viewer display of logger forms was throwing exceptions on Boolean values which had been stored as a String or Integer 0 or 1 in some databases. Now fixed to turn these into a sensible boolean value for the data table * Logger form plotting Fixed logger form plotting in Viewer so that points can find their correct GPS position (based on time) * Fix small bugs * Fix settings import not all imports working. Now seems fixed. --------- Co-authored-by: Jamie Mac <macster110@gmail.com> commitb7cbd2592f
Merge:ae8839e7
639f3360
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Dec 20 14:48:30 2023 +0000 Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main commitae8839e756
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Dec 20 14:48:15 2023 +0000 Fix settings import not all imports working. Now seems fixed. commit639f33607e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Dec 20 09:05:33 2023 +0000 Fix small bugs commit3e4dd77908
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Dec 19 16:41:57 2023 +0000 Logger form plotting Fixed logger form plotting in Viewer so that points can find their correct GPS position (based on time) commit1d9768b8c1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Dec 19 16:41:57 2023 +0000 Logger form plotting Fixed logger form plotting in Viewer so that points can find their correct GPS position (based on time) commit2fa91d69a5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Dec 19 16:41:57 2023 +0000 Logger form plotting Fixed logger form plotting in Viewer so that points can find their correct GPS position (based on time) commit1461808b14
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Dec 19 16:41:57 2023 +0000 Logger form plotting Fixed logger form plotting in Viewer so that points can find their correct GPS position (based on time) commit54f5a5f0fb
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Dec 19 15:54:38 2023 +0000 Logger forms viewer Viewer display of logger forms was throwing exceptions on Boolean values which had been stored as a String or Integer 0 or 1 in some databases. Now fixed to turn these into a sensible boolean value for the data table commit0085215eff
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Dec 19 15:54:38 2023 +0000 Logger forms viewer Viewer display of logger forms was throwing exceptions on Boolean values which had been stored as a String or Integer 0 or 1 in some databases. Now fixed to turn these into a sensible boolean value for the data table commitea6caecc67
Merge:d200e5c2
bfbb58ea
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Dec 19 12:45:56 2023 +0000 Updated POM working POM for build with Tethys. Note though that it's failing to get rid of all signature files in the \META-INF\ folder, so the two files META-INF\ECLIPSE_.SF and META-INF\ECLIPSE_.RSA must be removed before the jar file can be used. commitd200e5c2df
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Dec 18 18:30:41 2023 +0000 Maven stuff for nilus and javaclient commitbfbb58ea5a
Merge:480f55f6
d1b40c1d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Dec 18 18:25:29 2023 +0000 Merge pull request #51 from PAMGuard/main get whistle det fix commitd1b40c1d86
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Dec 18 16:48:36 2023 +0000 Release V2.02.09e fixes to WMD stub removal to make it a lot faster. commit3cf0a4e1e6
Merge:25d10d54
480f55f6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Dec 18 15:27:24 2023 +0000 Merge remote-tracking branch 'origin/main' into Tethys commit291b00e1b1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Dec 18 15:19:22 2023 +0000 Merge from DG with fixes to MatchedTemplate classifier. (#119) * Stop command small change so command is available as a constant * Lots of small updates to enable opening of a secondary configuration for batch processing control. * Fix user input bug in viewer which created exponential copies of user comments! * Adding TAST trigger alarm action To be competed when GW provide correct string for interface * Echo offline detection Fix up affected datablocks for offline echo detection * fix module import System for importing modules from other psfx files was not working. Probably wasn't working for quite some time. Now fixed. * Bug fixes to Match Template classifier 1) When a large template was imported only 1: fftLength of the mathc waveform was used and so clicks would be correlated with noise. The peak of the template is now used when the peak search function is selected. 2) The plus button in the tab pane had disappeared. 3) Seems like the decimators were the wrong round. So the waveforms were using an up sample function when they should have been using a decimator function. and vice versa...major bug when using different sample rates! * Fix merge Merged in a single commit from Jamies fork that had updates to the template classifier. Then had to make a few changes to get it working with other changes J had made that must have been in other commits. --------- Co-authored-by: Jamie Mac <macster110@gmail.com> commit480f55f6e9
Merge:2f41c986
667b68e2
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Dec 18 15:18:18 2023 +0000 Merge pull request #50 from PAMGuard/main merge from main (#118) commit2f41c986f4
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Dec 18 14:58:24 2023 +0000 Fix merge Merged in a single commit from Jamies fork that had updates to the template classifier. Then had to make a few changes to get it working with other changes J had made that must have been in other commits. commit1b9d80b0eb
Author: Jamie Mac <macster110@gmail.com> Date: Thu Dec 14 12:06:51 2023 +0000 Bug fixes to Match Template classifier 1) When a large template was imported only 1: fftLength of the mathc waveform was used and so clicks would be correlated with noise. The peak of the template is now used when the peak search function is selected. 2) The plus button in the tab pane had disappeared. 3) Seems like the decimators were the wrong round. So the waveforms were using an up sample function when they should have been using a decimator function. and vice versa...major bug when using different sample rates! commit667b68e231
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Dec 18 14:09:30 2023 +0000 merge from main (#118) * Stop command small change so command is available as a constant * Lots of small updates to enable opening of a secondary configuration for batch processing control. * Fix user input bug in viewer which created exponential copies of user comments! * Adding TAST trigger alarm action To be competed when GW provide correct string for interface * Echo offline detection Fix up affected datablocks for offline echo detection * fix module import System for importing modules from other psfx files was not working. Probably wasn't working for quite some time. Now fixed. commitbe88f4b296
Merge:0039ff74
7a321f6d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Dec 18 14:07:19 2023 +0000 # WARNING: head commit changed in the meantime Merge branch 'main' of https://github.com/PAMGuard/PAMGuard into main commit7a321f6d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Dec 18 13:28:38 2023 +0000 Revert "Merge branch 'main' of https://github.com/PAMGuard/PAMGuard" This reverts commitf52a27ccf2
, reversing changes made to4a5c6fe52e
. commitf52a27ccf2
Merge:4a5c6fe5
f8d2de44
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Dec 18 12:45:53 2023 +0000 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard commit4a5c6fe52e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Dec 18 12:45:49 2023 +0000 small fix in histograms small fix in histograms to avoid null commit25d10d54b4
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sun Dec 17 19:28:03 2023 +0000 Start Tethys Help commita761100ba7
Merge:c3edae51
0039ff74
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sun Dec 17 12:52:36 2023 +0000 Merge remote-tracking branch 'origin/main' into Tethys commitc3edae516b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sun Dec 17 12:52:06 2023 +0000 Small error handling commitf8d2de4482
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sun Dec 17 12:27:31 2023 +0000 Settings import (#117) * Stop command small change so command is available as a constant * Lots of small updates to enable opening of a secondary configuration for batch processing control. * Fix user input bug in viewer which created exponential copies of user comments! * Adding TAST trigger alarm action To be competed when GW provide correct string for interface * Echo offline detection Fix up affected datablocks for offline echo detection * fix module import System for importing modules from other psfx files was not working. Probably wasn't working for quite some time. Now fixed. commit0039ff7422
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sun Dec 17 12:19:18 2023 +0000 fix module import System for importing modules from other psfx files was not working. Probably wasn't working for quite some time. Now fixed. commit2e29e9cd95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Dec 15 17:49:39 2023 +0000 Deployment and Detections work Big tidy up of Deployment and Detections output. Think it' spretty close to a functional system now. commit75d349e33c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 14 18:52:17 2023 +0000 Echo offline detection Fix up affected datablocks for offline echo detection commitf55311ea36
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 14 18:51:42 2023 +0000 Adding TAST trigger alarm action To be competed when GW provide correct string for interface commit760b9769d7
Merge:4297afdc
951e3116
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 14 12:43:07 2023 +0000 Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main commit4297afdc51
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 14 12:42:41 2023 +0000 Fix user input bug in viewer which created exponential copies of user comments! commit3059e087ac
Merge:9a000586
87813746
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 14 12:27:14 2023 +0000 Merge branch 'Tethys' of C:\Users\dg50\source\repos\PAMGuardTethys into Tethys commit9a0005861c
Merge:951e3116
5b649edc
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 14 12:14:44 2023 +0000 Merge branch 'Tethys' of C:\Users\dg50\source\repos\PAMGuardTethys into Tethys commit8781374685
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 14 11:57:44 2023 +0000 Small changes to deployment table commitef92e1eea9
Merge:02ad66db
951e3116
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 14 10:53:46 2023 +0000 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main commit951e3116a5
Merge:2dd90f6a
b12ccf9c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 14 10:51:17 2023 +0000 Merge pull request #48 from PAMGuard/main Merge from main commitb12ccf9c67
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 14 10:50:29 2023 +0000 Merge with main (#116) * Stop command small change so command is available as a constant * Lots of small updates to enable opening of a secondary configuration for batch processing control. commit02ad66db3b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 14 10:33:46 2023 +0000 User input viewer bug PAMGuard was marking multiline comments as changed and then relogging them. Led to exponential increase in database size! commit03483ded18
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Dec 13 17:31:35 2023 +0000 Deployment export Improved deployment export interface and options. commit860d1bec17
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 7 20:08:17 2023 +0000 Update Calibration export Stop repeating hydrophones and add two addresses to Calibrations docs commit9c86b41027
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 7 15:10:45 2023 +0000 Project info dialog More wrapping of nilus objects to make a general project info tab in PAMGuard. This is global and can share basic project informatin with the Tethys module. commit7721d7f1c0
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Dec 6 17:35:57 2023 +0000 Global metadata Reorganised how global meta data for a PAMGuard dataset is managed by wrapping a nilus deployment object so that PAMGuard settings can serialise and unpack the xml version of a nilus Deployment object. commitbafe93e7f5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Dec 6 12:20:40 2023 +0000 SQLLogging revert Revert main table definition class used by SQLLogging to PamTableDefinition, back from EmptyTableDefinition, to maintain compatibility with existing plugin modules. commit9939e8aa85
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Dec 4 21:27:00 2023 +0000 Calibrations Export Functional Calibrations export wizard and display commit275a53c042
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sun Dec 3 18:21:09 2023 +0000 Calibrations display display of calibrations documents + some general tidying up of document management and display. commit840e6c89a1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Nov 16 20:36:14 2023 +0000 R2.02.09d Fix matched template classifier import fix azigram help file image display commit2dd90f6a32
Merge:58fe0d77
acc806d3
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Nov 15 15:02:50 2023 +0000 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard into main commit58fe0d7754
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Nov 15 15:02:18 2023 +0000 Lots of small updates to enable opening of a secondary configuration for batch processing control. commitacc806d375
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Nov 15 13:08:02 2023 +0000 Updated X3 library to 2.2.6 commita4f484c76c
Merge:8e60ad2e
d7c4c278
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Nov 15 09:44:09 2023 +0000 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main commit8e60ad2eff
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Nov 15 09:43:39 2023 +0000 update to array diagnostics and sensor control commitd7c4c278d8
Author: m2oswald <45486636+m2oswald@users.noreply.github.com> Date: Wed Nov 15 09:17:49 2023 +0000 Added code to Rocca for training/testing classifier (#114) * allow Rocca to run without classifiers Fixed bug that threw an error if no classifier files were specified in Rocca Params dialog * add rocca switch to enable dev mode currently only shows/hides extra buttons in the Params dialog, but will extend to more options in the future * Fix memory issue with RoccaContourDataBlocks not being released for garbage collection Set RoccaContourDataBlock objects to null and stop PamObserver Timer to force release * Fix problem tracing whistles in Rocca spectrogram pop-up Whistle and raw data were being cleared before the user had time to trace out the whistle, causing PAMGuard to throw an exception. Both were already being cleared when the pop-up window is closed, so no need to do it here. * updated for training/testing classifiers commitd5f504dcd1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Nov 10 18:08:31 2023 +0000 Bearing localiser offline save Bug stopping it correctly saving data from the offline task to the database fixed. commit6cc01fe77a
Merge:1f8e790a
9fca879c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Oct 27 10:06:52 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main commit9fca879c39
Merge:bff8eeeb
7a44d49e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Oct 27 10:02:47 2023 +0100 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main commit7a44d49e27
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Oct 27 09:59:28 2023 +0100 X3 Version 2.2.3 Add maven jar files for X3/SUD version 2.2.3 commitbff8eeebc5
Merge:3da3f31b
fa5fe994
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Oct 26 15:50:26 2023 +0100 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main commitfa5fe9943d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Oct 26 14:44:41 2023 +0100 update sud file management to more efficiently skip to the correct part of a sud file when reading data offline. commit1f8e790ae5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Sep 29 13:43:49 2023 +0100 Collection enum Made an enum for the different collections. More robust than passing the names around as strings. Contains functions for converting between the collection name and the documents names within those collections. commit773f1f542b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sun Sep 24 21:59:15 2023 +0100 Species map i/o commit8257122d14
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Sep 21 18:01:41 2023 +0100 Log Tethys output and include instrumentid in Deployment queries commit4d294b56a8
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Sep 19 16:55:33 2023 +0100 Click event output commit5fe0927c10
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Sep 18 12:49:39 2023 +0100 Noise logging commit415ec87938
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sun Sep 17 21:10:23 2023 +0100 noise output commit158eedce8c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Sep 15 15:15:28 2023 +0100 Detections output more work on detections output. commitdb1cc75bc1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Sep 13 17:28:47 2023 +0100 More output More changes to Detections output. commit85fd84d18a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Sep 11 21:52:46 2023 +0100 Fix binned output couple of fixes in binned output commit65dfb5688b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Sep 11 17:47:50 2023 +0100 More on granularity Nice format of granularity in display tables. commitc221d78aa2
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Sep 11 17:07:15 2023 +0100 Added bin granularity binned granularity in place. TODO Encounter granularity. commitbaca001ed8
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Sep 8 16:31:00 2023 +0100 Param output only if not display commit7465243169
Merge:fb00a757
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Sep 8 13:32:22 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main commit3da3f31b33
Merge:dbeaa668
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Sep 8 13:29:37 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main commitdbeaa66821
Merge:1b5454be
60435e56
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Sep 8 13:26:11 2023 +0100 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard into main commit60435e567a
Author: Brian S Miller <93690136+BrianSMiller@users.noreply.github.com> Date: Fri Sep 8 21:54:40 2023 +1000 Fixes issues #111 and fixes #112 (DIFAR module crashes and ability to use Deep Learning Detections in DIFAR module) (#110) * Bugfix for OverlayMarks Check for a null pointer exception in OverlayMarks that was causing a crash on startup. * Bugfix for null pointer in symbol manager Fix a bug that I found where the DIFAR module was crashing the symbol manager. Seems that this was due to this subclass of clip generator having a null value for it's uniqueName. I've fixed by checking for null values and assigning a generic symbol when null. * DeepLearning detections canGenerateClips=true Set flag in DeepLearning detector so that detections are considered 'clips' by Pamguard. This allows them to be processed automatically in the DIFAR Localisation module (and maybe others). * DIFAR: bugfix frequency limits for auto-detections Fix a bug in DIFAR module where the frequency limits of automated detections were not being set properly by the DIFAR module. * DeepLearning - Bugfix to detection duration Fix bug in deep learning detector where duration (in samples) was being set to number of samples in a hop instead of the number of samples in a segment. commitfb00a757cd
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Sep 7 16:58:38 2023 +0100 Data export A few fixes in Detections export. commit3688719e25
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Aug 31 17:06:51 2023 +0100 Working parameter output Only just and not complete, but working. commit07ced6ae6d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Aug 29 11:53:40 2023 +0100 Species info Sort out of species info which hopefully now deals with all eventualities. commit74deebe446
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Aug 8 18:29:45 2023 +0100 Fixed queries Also added internal display of existing docuemtns (so they can be deleted) commit9018176899
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Jul 20 19:06:42 2023 +0100 ITIS Codes GUI Basic system in place for handling ITIS species codes. commit5c969d8889
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Jul 19 13:56:39 2023 +0100 work on species mapping commit527aeccbb8
Merge:cd70026c
3385935a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Jul 3 18:00:53 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main commitcd70026cf8
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Jul 3 17:53:35 2023 +0100 Starting to map species codes commit3385935aec
Merge:68b2f3bb
c3c31c33
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Jul 3 17:48:41 2023 +0100 Merge pull request #47 from PAMGuard/main pull from main commit75470b450b
Merge:f3944e35
68b2f3bb
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jun 9 13:01:35 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main Conflicts: src/PamModel/PamModel.java commitf3944e3536
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jun 9 12:56:23 2023 +0100 Update FolderInputSystem.java commit68b2f3bb53
Merge:1b5454be
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jun 9 12:53:30 2023 +0100 Merge pull request #46 from PAMGuard/main get V2.02.08 from main commit3df05c3ec6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon May 29 15:27:21 2023 +0100 Document export commit36da1bcbeb
Merge:1ea20d80
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon May 29 09:02:48 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main commit1b5454be91
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri May 26 10:27:25 2023 +0100 Stop command small change so command is available as a constant commitd841959171
Merge:f97f967b
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri May 26 09:53:08 2023 +0100 Merge pull request #45 from PAMGuard/main pull from main commitf97f967b23
Merge:508ca524
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue May 23 15:46:57 2023 +0100 Merge pull request #44 from PAMGuard/main Map file errors commit508ca524e8
Merge:becb24dc
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri May 12 15:38:04 2023 +0100 Merge pull request #43 from PAMGuard/main update from main commit1ea20d80ed
Merge:49843b40
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon May 8 15:46:04 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main commitbecb24dcc5
Merge:2953d82b
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon May 8 15:43:58 2023 +0100 Merge pull request #42 from PAMGuard/main X3 updates commit49843b405f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sun May 7 20:06:59 2023 +0100 Some query changes Changes in server code required update of some of the json for existing queries. commit00410d2017
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sun May 7 19:00:37 2023 +0100 Exception handling Exception handling and warning messages on Tethys transactions commit71c8415bc8
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sat May 6 19:26:04 2023 +0100 Playing with export options commit38b05b13c5
Merge:8a9719b4
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sat May 6 11:15:48 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main commit8a9719b425
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon May 1 18:55:35 2023 +0100 Tethys working again And a bit more playing around with metadata handling for Deploymnet documents commit379cd61afa
Merge:4f0f4a6c
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Apr 24 13:35:51 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main commit4f0f4a6c36
Merge:dfb78813
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Apr 13 18:04:38 2023 +0100 Merge remote-tracking branch 'PAMGuardDGOriginal/main' into main Conflicts: src/binaryFileStorage/BinaryStoreProcess.java src/clickDetector/layoutFX/clickClassifiers/SweepClassifierSetPaneFX.java commitdfb78813ea
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Apr 13 17:41:52 2023 +0100 Update TethysControl.java commitdbc8f0c682
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Apr 4 21:02:09 2023 +0100 Men items to open collections in browser commit35fa8270d2
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Apr 4 20:53:14 2023 +0100 Changes to match server updates Deleting now working. am automatically calling a windows curl command to disable the cache on the server. commitfaea94205c
Merge:573785d9
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Sun Apr 2 11:15:19 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main Conflicts: src/Array/ArrayDialog.java src/PamModel/PamModel.java src/clickDetector/layoutFX/clickClassifiers/SweepClassifierSetPaneFX.java commit573785d98f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Mar 31 19:07:02 2023 +0100 GUi Play Export wizard for detections commit4be259b76b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Mar 29 20:57:54 2023 +0100 GUI Play Experimenting with GUI components commit642f1da873
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Mar 22 20:07:17 2023 +0000 updated doc names Dog names now match their id so it's easier to delete them from Tethys commitc7ceba1604
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Mar 21 20:05:38 2023 +0000 GUI Work. working on some GUI / control options. Semi functional. Seem to have a problem with time zones converting from XML time to millis which need sorting. commitf51a519d82
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Mar 17 21:26:13 2023 +0000 Start Tethys GUI commitb344b775ec
Merge:cff6f718
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Mar 16 16:35:09 2023 +0000 Merge branch 'main' of https://github.com/douggillespie/PAMGuardTethys commitcff6f71881
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Mar 16 16:34:03 2023 +0000 update autoprovider commitecf364f999
Merge:7f680f3e
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Author: kbolaughlin <kolaughl@ucsd.edu> Date: Thu Mar 16 09:14:11 2023 -0700 Merge branch 'main' of https://github.com/douggillespie/PAMGuardTethys commit7f680f3e20
Author: kbolaughlin <kolaughl@ucsd.edu> Date: Thu Mar 16 09:13:42 2023 -0700 fixed some deploymentData defaulting fixed some deploymentData defaulting commit289b065914
Merge:8c3c0098
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Mar 15 23:39:33 2023 +0000 Merge branch 'main' of https://github.com/douggillespie/PAMGuardTethys commit8c3c0098da
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Mar 15 23:38:51 2023 +0000 work commit140af14cba
Author: kbolaughlin <kolaughl@ucsd.edu> Date: Wed Mar 15 16:38:13 2023 -0700 required field update and post to tethys fxn updates fill in required data for deployments/detections and minor tweaks to post to tethys fxn commitd96ace1ca2
Merge:f15a6daf
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Author: kbolaughlin <kolaughl@ucsd.edu> Date: Wed Mar 15 15:05:57 2023 -0700 Merge branch 'main' of https://github.com/douggillespie/PAMGuardTethys commitf15a6dafa6
Author: kbolaughlin <kolaughl@ucsd.edu> Date: Wed Mar 15 15:05:33 2023 -0700 TethysExportControl add post to tethys code in TethysExportControl commit27b8456c5a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Mar 15 22:04:13 2023 +0000 More detection work commite8e947b91f
Merge:ceefa618
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Author: kbolaughlin <kolaughl@ucsd.edu> Date: Wed Mar 15 12:38:33 2023 -0700 Merge branch 'main' of https://github.com/douggillespie/PAMGuardTethys commitceefa6188c
Author: kbolaughlin <kolaughl@ucsd.edu> Date: Wed Mar 15 12:38:29 2023 -0700 Update TethysExporter.java updated export code to add namespace to the xml produced commit4876899b54
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Mar 15 18:13:11 2023 +0000 Detections Document ready to go commitf97247f148
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Mar 15 17:21:35 2023 +0000 Detections output Working towards output of Detections ... commit98ce0ff9d2
Merge:68b7d08b
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Author: kbolaughlin <kolaughl@ucsd.edu> Date: Tue Mar 14 14:16:02 2023 -0700 Merge branch 'main' of https://github.com/douggillespie/PAMGuardTethys commit68b7d08bc6
Author: kbolaughlin <kolaughl@ucsd.edu> Date: Tue Mar 14 14:14:22 2023 -0700 Update TethysExporter.java minor tweak commit3991a87102
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Mar 14 21:13:48 2023 +0000 up[dated exporter commit0fad7c6cfa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Mar 14 17:34:45 2023 +0000 Deployment doc Work on deployment document population commit103c050d0c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Tue Mar 14 17:28:13 2023 +0000 Trying to Merge with KB Changes commit2dd870956a
Author: kbolaughlin <kolaughl@ucsd.edu> Date: Tue Mar 14 08:40:49 2023 -0700 Update TethysExporter.java small fix commit8842166f43
Merge:799c7b21
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Author: kbolaughlin <kolaughl@ucsd.edu> Date: Tue Mar 14 08:38:08 2023 -0700 Merge branch 'main' of https://github.com/douggillespie/PAMGuardTethys commit799c7b218e
Author: kbolaughlin <kolaughl@ucsd.edu> Date: Mon Mar 13 17:27:39 2023 -0700 Update TethysExporter.java file importer commit501c0ec292
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Mar 13 21:44:19 2023 +0000 Deployment positions commit98cf904830
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Mar 13 20:45:51 2023 +0000 first very incomplete deployment doc commit456f9102db
Merge:534765d1
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Mar 13 18:36:36 2023 +0000 Merge branch 'main' of https://github.com/douggillespie/PAMGuardTethys commit534765d1cc
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Mar 13 18:35:25 2023 +0000 notes commit7d69992d44
Author: kbolaughlin <kolaughl@ucsd.edu> Date: Mon Mar 13 11:33:46 2023 -0700 Update TethysExporter.java testing commit24c7baab6e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Mar 13 18:31:04 2023 +0000 Notes commit43ea481c3f
Author: kbolaughlin <kolaughl@ucsd.edu> Date: Mon Mar 13 11:05:10 2023 -0700 adding deployment recovery pair commitbfed9cfa00
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Feb 23 13:37:53 2023 +0000 Update to Nilus 3 commit9c10af43bc
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Feb 22 10:51:04 2023 +0000 Added code to find acquisition settings This is most of the data needed for TEthys commitf12be978aa
Merge:b2e6f85f
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Feb 1 10:23:39 2023 +0000 Merge pull request #2 from douggillespie/Tethys Merging Tethys branch into main commit5b649edc19
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 27 15:13:30 2023 +0000 Comments Added a couple of comments to help SDSU folk get off the ground commitb2e6f85faf
Merge:738c9ab6
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Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 27 14:34:12 2023 +0000 Merge pull request #1 from douggillespie/Tethys Tethys commit1c11e3da15
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Fri Jan 27 11:11:02 2023 +0000 DBXM Export A few functions to help find data. commitf02001a6fc
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Jan 25 16:40:03 2023 +0000 Changes for Tethys integration commit5e6cd42eea
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Thu Dec 15 18:21:17 2022 +0000 Tethys Export A bit of fun writing some outline functions to export data to Tethys. commit48716cb366
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Mon Dec 12 17:04:20 2022 +0000 XML Settings Added a new log of XML settings / Effort for each module to the database. Had to make a lot of changes so that the base table in SQLLogging is of type EmptyTableDefinition, not PamTableDefinition. Needs a lot of testing and may break plugins using logging features. commit29230a5c5f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com> Date: Wed Nov 23 14:56:25 2022 +0000 Better XML Improving XML data for each detector
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XML
13 lines
296 B
XML
<?xml version="1.0" encoding="UTF-8"?>
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<metadata>
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<groupId>tethys.org</groupId>
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<artifactId>javaclient</artifactId>
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<versioning>
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<release>3.0</release>
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<versions>
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<version>3.0</version>
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</versions>
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<lastUpdated>20231221111337</lastUpdated>
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</versioning>
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</metadata>
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