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Pre release V2.02.09f
With release notes for V2.02.10 which is coming soon ...
This commit is contained in:
Douglas Gillespie
parent
f9a0716c0f
commit
1b8bb14e9d
402
README.html
402
README.html
@ -324,9 +324,8 @@ href="http://www.gnu.org/licenses/gpl-3.0-standalone.html">http://www.gnu.org/li
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<h1><a name="_Toc444450028"></a><a name="_Toc444450392"></a>INSTALLATION </h1>
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<p class=MsoNormal>The latest version of PAMGuard has been tested on 64 bit
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Windows 10. We expect it to work without problems on 64 bit versions of Windows
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8 and probably 7. Some testing has been undertaken on Windows 11 and nothing
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unexpected has been noted. </p>
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Windows 10 and Windows 11. We expect it to work without problems on 64 bit
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versions of Windows 8 and probably 7. </p>
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<p class=MsoNormal>On Windows, download and run the Windows installer.</p>
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@ -372,23 +371,27 @@ size for the JVM being used to run Pamguard i.e. how much memory it gets to
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use. The default max size usually being too low.</p>
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<p class=MsoNormal>The -Djava.library.path=lib64 tells the JVM that it should
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look in the folder called "lib64" for the required shared libraries (change
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to <em><span style='font-family:"Calibri",sans-serif'>lib</span></em> for the
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32 bit version).</p>
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look in the folder called "lib64" for the required shared libraries
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(change to <em><span style='font-family:"Calibri",sans-serif'>lib</span></em>
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for the 32 bit version).</p>
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<p class=MsoNormal>For "Mixed" and "Viewer" modes just add
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a "-m" or "-v" to the list of java arguments. On Windows
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just run the appropriately named executable (e.g. PamguardBeta_MixedMode.exe or
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PamguardBeta_ViewerMode.exe):</p>
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<p class=MsoNormal><em><span style='font-family:"Calibri",sans-serif'>java -Xms384m
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-Xmx4096m -Djava.library.path=lib64 -jar PamguardBeta_xxxxxx.jar -v</span></em></p>
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<p class=MsoNormal><em><span style='font-family:"Calibri",sans-serif'>java
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-Xms384m -Xmx4096m -Djava.library.path=lib64 -jar PamguardBeta_xxxxxx.jar -v</span></em></p>
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<p class=MsoNormal><em><span style='font-family:"Calibri",sans-serif'> </span></em></p>
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<h1><a name="_LATEST_VERSION_2.02.03"></a><a name="_VERSION_2.02.07_January"></a><em><span
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style='font-size:12.0pt;font-family:"Cambria",serif;font-style:normal'><a
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href="#_Version_2.02.09_June">Latest Version 2.02.09 June 2023</a></span></em></h1>
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<h1><a name="_LATEST_VERSION_2.02.03"></a><a name="_VERSION_2.02.07_January"></a><a
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name="_Latest_Version_2.02.10"></a><em><span style='font-size:12.0pt;
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font-family:"Cambria",serif;font-style:normal'><a
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href="#_Version_2.02.10_January">Latest Version 2.02.10 January 2024</a></span></em></h1>
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<h1><em><span style='font-size:12.0pt;font-family:"Cambria",serif;font-style:
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normal'><a href="#_Version_2.02.09_June">Version 2.02.09 June 2023</a></span></em></h1>
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<h1><em><span style='font-size:12.0pt;font-family:"Cambria",serif;font-style:
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normal'><a href="#_Version_2.02.08_May">Version 2.02.08 May 2023</a></span></em></h1>
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@ -457,8 +460,70 @@ Version 2.00.10 June 2017</a></span></h1>
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<h1><a name="_Latest_Version_2.02.03_1"></a><a name="_Latest_Version_2.02.05"></a><a
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name="_Latest_Version_2.02.06"></a><a name="_Latest_Version_2.02.07"></a><a
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name="_Latest_Version_2.02.08"></a><a name="_Version_2.02.09_June"></a><span
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lang=EN-US>Version 2.02.09 June 2023</span></h1>
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name="_Latest_Version_2.02.08"></a><a name="_Version_2.02.09_June"></a><a
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name="_Version_2.02.10_January"></a>Version 2.02.10 January 2024</h1>
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<h2><span lang=EN-US>New Features</span></h2>
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<p class=MsoNormal><b><span lang=EN-US>Importing modules</span></b><span
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lang=EN-US> from other configurations: New options from file menu allowing
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import of specific modules, or module settings from other configurations. E.g.
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if you had three similar configurations and had set one of them up with a new
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detector, or got the click classifier settings set up just right in one of
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those configurations, you can import the additional modules or the click
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detector settings easily into the other configurations. </span></p>
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<p class=MsoNormal><b><span lang=EN-US>Improved SUD (soundtrap compressed
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files) file performance</span></b><span lang=EN-US> when scrolling through
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audio data in Viewer mode. </span></p>
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<h2><span lang=EN-US>Bug Fixes</span></h2>
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<p class=MsoNormal><b><span lang=EN-US>Logger Forms</span></b></p>
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<p class=MsoNormal><span lang=EN-US>Boolean (logical true/false, yes/no) data
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were not showing correctly in Viewer mode. Now fixed</span></p>
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<p class=MsoNormal><span lang=EN-US>Data selectors for plotting on map were not
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working, also fixed</span></p>
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<p class=MsoNormal><span lang=EN-US>Bearing localizer running offline was not
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correctly saving updated bearings to the database. Now fixed. </span></p>
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<p class=MsoNormal><b><span lang=EN-US>ROCCA Classifier fixes</span></b></p>
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<p class=MsoNormal><span lang=EN-US>Allow Rocca to run without classifiers: Fixed
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bug that threw an error if no classifier files were specified in Rocca Params
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dialog</span></p>
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<p class=MsoNormal><span lang=EN-US>Fix memory issue with
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RoccaContourDataBlocks not being released for garbage collection</span></p>
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<p class=MsoNormal><span lang=EN-US>Set RoccaContourDataBlock objects to null
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and stop PamObserver Timer to</span></p>
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<p class=MsoNormal><span lang=EN-US>force release</span></p>
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<p class=MsoNormal><span lang=EN-US>Fix problem tracing whistles in Rocca
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spectrogram pop-up: Whistle and raw data were being cleared before the user had
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time to trace out the whistle, causing PAMGuard to throw an exception. Both
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were already being cleared when the pop-up window is closed, so no need to do
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it here.</span></p>
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<p class=MsoNormal><b><span lang=EN-US>DIFAR Module</span></b><span lang=EN-US>:
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Bug crashing the module with null pointer errors fixed.</span></p>
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<p class=MsoNormal><b><span lang=EN-US>Whistle Detector</span></b><span
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lang=EN-US>: Fixed bug which caused the detector to slow to almost zero speed
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when large complex sounds with many branches were detected. </span></p>
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<p class=MsoNormal><b><span lang=EN-US>Screen Position</span></b><span
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lang=EN-US>: When using multiple monitors, if you move a configuration to a
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computer with a different monitor layout, the GUI should work out if it’s
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opening on a screen area which no longer exists and move itself onto the
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primary monitor. </span></p>
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<h1><span lang=EN-US>Version 2.02.09 June 2023</span></h1>
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<h2><span lang=EN-US>Bug Fixes</span></h2>
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@ -484,15 +549,15 @@ bearings, the localizer was not correctly loading required raw or FFT data to
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input to the cross correlation algorithm. This is now fixed so that you can
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reprocess bearings in viewer mode. </span></p>
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<p class=MsoNormal><span lang=EN-US>Map files: Added additional exception handlers
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to handle corrupt map files. </span></p>
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<p class=MsoNormal><span lang=EN-US>Map files: Added additional exception
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handlers to handle corrupt map files. </span></p>
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<h2><span lang=EN-US>New Features</span></h2>
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<p class=MsoNormal><span lang=EN-US>Restart Options: When you restart
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processing of offline files, if output data already exist (binary data of
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within database tables) you will be asked if you want to overwrite the data,
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cancel, or try to continue from where to left off. </span></p>
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processing of offline files, if output data already exist (binary data of within
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database tables) you will be asked if you want to overwrite the data, cancel,
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or try to continue from where to left off. </span></p>
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<p class=MsoNormal><span lang=EN-US>Updated SoundTrap sud file interface so
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that PAMGuard now extracts and stores the Click Detector settings from the sud
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@ -508,9 +573,9 @@ the first two characters of the string name may be. </span></p>
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<h2><span lang=EN-US>Bug Fixes</span></h2>
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<p class=MsoNormal><span lang=EN-US>Use of localization sensor and orientation data
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for static hydrophones had a bug whereby it would continually ‘forget’ angle
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offsets applied to static hydrophones in viewer mode. This is now fixed. </span></p>
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<p class=MsoNormal><span lang=EN-US>Use of localization sensor and orientation
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data for static hydrophones had a bug whereby it would continually ‘forget’
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angle offsets applied to static hydrophones in viewer mode. This is now fixed. </span></p>
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<p class=MsoNormal><span lang=EN-US>Click tool bar: Correctly shows event
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selection options even if no species classification options are in place. </span></p>
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@ -563,10 +628,10 @@ whistle classification module.</span></p>
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<p class=MsoNormal><span lang=EN-US>SoundTrap SUD file reading. If you’re using
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SoundTrap autonomous recorders from Ocean Instruments, you no longer need to
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decompress the SoundTrap files prior to processing. This will save time and a
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lot of disk space. Extraction of clicks from the inbuilt SoundTrap Click detector
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can also happen while processing SUD file data with other detectors, thereby
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streamlining the whole processing chain. Read the online Help for details.
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</span></p>
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lot of disk space. Extraction of clicks from the inbuilt SoundTrap Click
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detector can also happen while processing SUD file data with other detectors,
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thereby streamlining the whole processing chain. Read the online Help for
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details. </span></p>
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<h1><span lang=EN-US>Version 2.02.05 October 2022</span></h1>
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@ -669,9 +734,9 @@ selections from drop down lists within any form.</p>
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<p class=MsoNormal> </p>
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<p class=MsoNormal>Note that updates have also been made to the Matlab interface
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to PAMGuard binary files, which has now also been migrated to GitHub at <a
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href="https://github.com/PAMGuard/PAMGuardMatlab">https://github.com/PAMGuard/PAMGuardMatlab</a>.
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<p class=MsoNormal>Note that updates have also been made to the Matlab
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interface to PAMGuard binary files, which has now also been migrated to GitHub
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at <a href="https://github.com/PAMGuard/PAMGuardMatlab">https://github.com/PAMGuard/PAMGuardMatlab</a>.
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</p>
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<h1> </h1>
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@ -686,9 +751,8 @@ the TF FX display to crash if no data were displayed.</span></p>
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<p class=MsoNormal><span lang=EN-US>See major release notes for V 2.02.01
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below. </span></p>
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<p class=MsoNormal><span lang=EN-US>Bug 495: TD FX display throws
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NullPointerException if user has removed all data units and then moves mouse
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over display area.</span></p>
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<p class=MsoNormal><span lang=EN-US>Bug 495: TD FX display throws NullPointerException
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if user has removed all data units and then moves mouse over display area.</span></p>
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<h1><a name="_Latest_Version_2.02.01"></a><span lang=EN-US>Version 2.02.01
|
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October 2021</span></h1>
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@ -848,23 +912,23 @@ Noise Level Outputs - as an aid to performance diagnosis, some detectors
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(currently the GPL, Click Detector and Whistle and Moan Detector) are
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outputting additional noise metrics to their binary output files. These can be
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read with the <a href="https://sourceforge.net/projects/pamguard/files/Matlab/">PAMGuard
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Matlab library</a> and used to diagnose system performance in varying noise conditions.
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Improved displays within PAMGuard for these noise metrics will be included in a
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future release. </p>
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Matlab library</a> and used to diagnose system performance in varying noise
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conditions. Improved displays within PAMGuard for these noise metrics will be
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included in a future release. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>17. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>An implementation of the Generalized Power Law Detector,
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developed by Tyler Helble ([Helble et al., ‘A generalized power-law detection
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algorithm for humpback whale vocalizations’, The Journal of the Acoustical
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Society of America, vol. 131, no. 4, pp. 2682–2699, 2012) is now available.
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For details, see the online help </p>
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||||
developed by Tyler Helble ([Helble et al., ‘A generalized power-law
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detection algorithm for humpback whale vocalizations’, The Journal of the
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Acoustical Society of America, vol. 131, no. 4, pp. 2682–2699, 2012) is now
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available. For details, see the online help </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>18. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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A Deep Learning module for sound classification is now available. This allows
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users to deploy a large variety of deep learning models natively in PAMGuard.
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For details, see the <a
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>A Deep Learning module for sound classification is now
|
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available. This allows users to deploy a large variety of deep learning models
|
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natively in PAMGuard. For details, see the <a
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href="https://github.com/macster110/PAMGuard_DeepLearningSegmenter/blob/master/deep_learning_help.md">online
|
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help</a>. </p>
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@ -1205,8 +1269,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
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lang=EN-US> </span>Bug 437. Right whale detector crashing if no input was set.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
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Bug 438. Text not showing in tabs in Night colour mode.</p>
|
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
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lang=EN-US> </span>Bug 438. Text not showing in tabs in Night colour mode.</p>
|
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>7. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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@ -1298,8 +1362,8 @@ Implemented a simple UDP output for PAMGuard alarms. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>7. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Changes to Spectrogram Mark Observers, to allow individual channels to be
|
||||
selected instead of the spectrogram panel as a whole. </p>
|
||||
Changes to Spectrogram Mark Observers, to allow individual channels to be selected
|
||||
instead of the spectrogram panel as a whole. </p>
|
||||
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||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>8. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -1334,9 +1398,9 @@ be compatible with this version, and vice-versa.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Java 12 is better at handling Windows scaling issues on high-DPI displays.
|
||||
Beyond that, users should not notice much of a difference between this version
|
||||
and previous beta releases.</p>
|
||||
Java 12 is better at handling Windows scaling issues on high-DPI displays. Beyond
|
||||
that, users should not notice much of a difference between this version and
|
||||
previous beta releases.</p>
|
||||
|
||||
<!-- ************************************************************************************************************************** --><!-- ************************************************************************************************************************** -->
|
||||
|
||||
@ -1401,8 +1465,8 @@ lang=EN-US> </span>Updates to the Ishmael detectors.</p>
|
||||
<h1><a name="_Latest_Beta_Version_2.00.16"></a><span lang=EN-US>Beta Version
|
||||
2.00.16 May 2019</span></h1>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>PAMGuard Version 2 contains major updates.
|
||||
You should read and understand the notes listed for <a
|
||||
<p class=MsoNormal><span lang=EN-US>PAMGuard Version 2 contains major updates. You
|
||||
should read and understand the notes listed for <a
|
||||
href="#_Latest_Beta_Version_2.00.10">Beta Version 2.00.10</a> before proceeding
|
||||
with installation and use of this version.</span></p>
|
||||
|
||||
@ -1479,8 +1543,8 @@ Upgrades to the Group Localiser, including better error estimation.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Click Train Detector upgrades, including ability to import time
|
||||
chunks from csv file for batch processing.</p>
|
||||
lang=EN-US> </span>Click Train Detector upgrades, including ability to import
|
||||
time chunks from csv file for batch processing.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -1502,8 +1566,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
New Analog Array Sensors module, to read data from 3-axis accelerometers.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Send Email option added to Alarm module.</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Send Email option added to Alarm module.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>7. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -1701,10 +1765,10 @@ settings even when user tries to cancel or discard changes</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 387. Map was stopping displaying data based on the start time of
|
||||
data units. Have changed this to last updated time so that click events will
|
||||
display if they have been recently modified. Otherwise, long events get lost
|
||||
from the display.</p>
|
||||
</span>Bug 387. Map was stopping displaying data based on the start time of data
|
||||
units. Have changed this to last updated time so that click events will display
|
||||
if they have been recently modified. Otherwise, long events get lost from the
|
||||
display.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>7. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -1870,11 +1934,11 @@ to work with whistles.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Added option to export all settings and parameters as an XML-formatted file. Note
|
||||
that this required changes to the structure of the Array Manager, and as such
|
||||
any settings (psf) files created with this version of Pamguard cannot be used
|
||||
in older versions. Older psf files can be loaded with this version, but will be
|
||||
converted.</p>
|
||||
Added option to export all settings and parameters as an XML-formatted file.
|
||||
Note that this required changes to the structure of the Array Manager, and as
|
||||
such any settings (psf) files created with this version of Pamguard cannot be
|
||||
used in older versions. Older psf files can be loaded with this version, but
|
||||
will be converted.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -1948,11 +2012,11 @@ trying to classify a boxed whistle</p>
|
||||
<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
During conversion from Core to Beta versions, if there are any problems
|
||||
matching database units to binary store units the UID values will now be set to
|
||||
negative numbers instead of leaving them null. The user is warned about this
|
||||
and encouraged to manually fix the database.</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>During conversion from Core to Beta versions, if there are
|
||||
any problems matching database units to binary store units the UID values will
|
||||
now be set to negative numbers instead of leaving them null. The user is warned
|
||||
about this and encouraged to manually fix the database.</p>
|
||||
|
||||
<!-- ************************************************************************************************************************** -->
|
||||
|
||||
@ -2040,9 +2104,9 @@ showing. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>Bug 323. Difar module.</span> Fixed a couple of small
|
||||
bugs in the DIFAR system which caused it to not work if old configuratins were
|
||||
used. </p>
|
||||
</span><span lang=EN-US>Bug 323. Difar module.</span> Fixed a couple of small bugs
|
||||
in the DIFAR system which caused it to not work if old configuratins were used.
|
||||
</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2126,11 +2190,11 @@ the PAMGuard Viewer the older data will be converted to the new format (see
|
||||
below for details).</span></p>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>The most significant change in the binary
|
||||
file format is the addition of a Unique Data Identifier (UID) to each unit of data.
|
||||
This is intended to aid in offline analysis by making it easier for the user to
|
||||
link what they are seeing on different PAMGuard displays and also to link with
|
||||
any data post processed in Matlab or other custom analysis software. UID’s
|
||||
are also added to PAMGuard database tables. </span></p>
|
||||
file format is the addition of a Unique Data Identifier (UID) to each unit of
|
||||
data. This is intended to aid in offline analysis by making it easier for the
|
||||
user to link what they are seeing on different PAMGuard displays and also to
|
||||
link with any data post processed in Matlab or other custom analysis software.
|
||||
UID’s are also added to PAMGuard database tables. </span></p>
|
||||
|
||||
<h4><span lang=EN-US>Converting Old Data</span></h4>
|
||||
|
||||
@ -2191,10 +2255,10 @@ so they will no longer work with older PAMGuard versions.</span></p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:54.0pt;text-indent:-36.0pt'><span
|
||||
lang=EN-US>2.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>Display colour options will be lost and most data
|
||||
displayed on the map may default to black. This is due to the above changes to
|
||||
how colours are managed. Changing back to the colours of your choice is
|
||||
relatively simple through the PAMGuard GUI. </span></p>
|
||||
</span><span lang=EN-US>Display colour options will be lost and most data displayed
|
||||
on the map may default to black. This is due to the above changes to how
|
||||
colours are managed. Changing back to the colours of your choice is relatively
|
||||
simple through the PAMGuard GUI. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:54.0pt;text-indent:-36.0pt'><span
|
||||
lang=EN-US> </span></p>
|
||||
@ -2236,8 +2300,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Rocca Module: added StartHr, ProportionWhists and ProportionClicks parameters
|
||||
to Event classifier</p>
|
||||
</span>Rocca Module: added StartHr, ProportionWhists and ProportionClicks
|
||||
parameters to Event classifier</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2388,10 +2452,10 @@ high sample rate. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'>2.<span style='font-size-adjust: none;
|
||||
font-stretch: normal'><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span></span><span lang=EN-US>Bug 305. Date and Time not being correctly extracted
|
||||
from wav files created using SoundTrap recorders. Fixed by correctly finding
|
||||
and unpacking information in the accompanying xml log files that come with
|
||||
SoundTrap files. </span></p>
|
||||
</span></span><span lang=EN-US>Bug 305. Date and Time not being correctly
|
||||
extracted from wav files created using SoundTrap recorders. Fixed by correctly
|
||||
finding and unpacking information in the accompanying xml log files that come
|
||||
with SoundTrap files. </span></p>
|
||||
|
||||
<h1><a name="_Latest_Version_1.15.06"></a><span lang=EN-US>Version 1.15.06
|
||||
November 2016</span></h1>
|
||||
@ -2627,11 +2691,11 @@ planned file format changes and that this is purely a future proofing exercise.<
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>7.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 279. GUI Resizing: The whole PAMGuard GUI would suddenly resize to
|
||||
something very small when a dialog is opened. This has been traced to improper
|
||||
use of a common dialog component SourcePanel which tries to repack its parent
|
||||
Window. Some programmers had inadvertently set it to repack the main PAMGuard
|
||||
GUI instead. This has been Fixed.</p>
|
||||
</span>Bug 279. GUI Resizing: The whole PAMGuard GUI would suddenly resize to something
|
||||
very small when a dialog is opened. This has been traced to improper use of a
|
||||
common dialog component SourcePanel which tries to repack its parent Window.
|
||||
Some programmers had inadvertently set it to repack the main PAMGuard GUI
|
||||
instead. This has been Fixed.</p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>8.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2749,8 +2813,8 @@ same click multiple times</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>Bug 253. Database import fails when Access database contains
|
||||
queries. Fixed.</span></p>
|
||||
</span><span lang=EN-US>Bug 253. Database import fails when Access database
|
||||
contains queries. Fixed.</span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -3186,19 +3250,18 @@ sonobuoys. See online help for details. </p>
|
||||
<p class=MsoNormal><i>MEAL Localiser</i> (Localisation Group)</p>
|
||||
|
||||
<p class=MsoNormal>This module, developed by Jamie Macaulay of St Andrews
|
||||
University estimates the 3D localisation of clicks using a variety of
|
||||
algorithms. It's primarily been developed to track harbour porpoise in three
|
||||
dimensions over scales of 10's of metres. While currently only working with
|
||||
output from the click detector, we hope eventually to extend its use to
|
||||
whistles as well. </p>
|
||||
University estimates the 3D localisation of clicks using a variety of algorithms.
|
||||
It's primarily been developed to track harbour porpoise in three dimensions
|
||||
over scales of 10's of metres. While currently only working with output from
|
||||
the click detector, we hope eventually to extend its use to whistles as well. </p>
|
||||
|
||||
<p class=MsoNormal><i>Accelerometer Readout</i> (Sensors group)</p>
|
||||
|
||||
<p class=MsoNormal>This module, funded by NOAA for the South West Fisheries
|
||||
Science Centre (SWFSC), measures pitch and roll from analogue accelerometer
|
||||
sensors in a hydrophone. Data are fed real time into the updated hydrophone
|
||||
array manager in order that bearings from a tetrahedral tracking array are correctly
|
||||
calculated in real world coordinates. </p>
|
||||
array manager in order that bearings from a tetrahedral tracking array are
|
||||
correctly calculated in real world coordinates. </p>
|
||||
|
||||
<p class=MsoNormal><i>Wild ArcGIS Interface</i> (Maps and Mapping group)</p>
|
||||
|
||||
@ -3208,12 +3271,12 @@ marine mammal survey package. See online help for details. </p>
|
||||
|
||||
<p class=MsoNormal><i>Alarms</i> (Utilities Group)</p>
|
||||
|
||||
<p class=MsoNormal>This is a general system of visual and audio alarms developed
|
||||
by Doug Gillespie for use on a variety of projects. The alarms can be coupled
|
||||
to any module or detector in PAMGuard. Where appropriate, modules can control
|
||||
which of their data will cause an alarm action (e.g. in the Click detector you
|
||||
can set which types of classified click will fire the alarm). See online help
|
||||
for details. </p>
|
||||
<p class=MsoNormal>This is a general system of visual and audio alarms
|
||||
developed by Doug Gillespie for use on a variety of projects. The alarms can be
|
||||
coupled to any module or detector in PAMGuard. Where appropriate, modules can
|
||||
control which of their data will cause an alarm action (e.g. in the Click
|
||||
detector you can set which types of classified click will fire the alarm). See
|
||||
online help for details. </p>
|
||||
|
||||
<p class=MsoNormal><i>Noise Band Monitor</i> (Sound Processing Group)</p>
|
||||
|
||||
@ -3261,9 +3324,9 @@ different. Details are available in the online help. </p>
|
||||
|
||||
<p class=MsoNormal>Can now read raw audio data direct from FLAC files. <a
|
||||
href="http://en.wikipedia.org/wiki/FLAC">FLAC</a> is a lossless compression
|
||||
algorithm for audio data. Files, or folders of files are accessed in the same way
|
||||
as WAV and AIFF files in the Sound Acquisition module. In a future release we
|
||||
also hope to provide support for writing FLAC files from the sound recorder
|
||||
algorithm for audio data. Files, or folders of files are accessed in the same
|
||||
way as WAV and AIFF files in the Sound Acquisition module. In a future release
|
||||
we also hope to provide support for writing FLAC files from the sound recorder
|
||||
module. </p>
|
||||
|
||||
<p class=MsoNormal><i>Sound Recorder Module</i></p>
|
||||
@ -3307,8 +3370,9 @@ shaped Finite Impulse Response filters (see online help for details). </p>
|
||||
|
||||
<p class=MsoNormal><i>Radar Display</i></p>
|
||||
|
||||
<p class=MsoNormal>Can now show bearings relative to true North OR the vessel heading.
|
||||
Also has the option of only showing certain types of click and whistle.</p>
|
||||
<p class=MsoNormal>Can now show bearings relative to true North OR the vessel
|
||||
heading. Also has the option of only showing certain types of click and
|
||||
whistle.</p>
|
||||
|
||||
<p class=MsoNormal><b>Bug Fixes</b></p>
|
||||
|
||||
@ -3372,9 +3436,9 @@ Also has the option of only showing certain types of click and whistle.</p>
|
||||
|
||||
<p class=MsoNormal><b>New Modules</b></p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>Clip Generator: Saves and
|
||||
displays short waveform clips around detections. Can work with any detector (or
|
||||
indeed any other data stream within PAMGuard). </p>
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>Clip Generator: Saves and displays
|
||||
short waveform clips around detections. Can work with any detector (or indeed
|
||||
any other data stream within PAMGuard). </p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>Local time display: displays the
|
||||
computers local time on the main display panel. </p>
|
||||
@ -3387,8 +3451,8 @@ survey software package.</p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'><i>Core Functionality</i></p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>New storage options have been implemented
|
||||
which give the user greater control of where data are stored. </p>
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>New storage options have been
|
||||
implemented which give the user greater control of where data are stored. </p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>Modules have been arranged into
|
||||
different groups in the configuration menus and tool tip texts have been added
|
||||
@ -3450,9 +3514,9 @@ information correctly in the binary files. </p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'><i>Logger Forms</i></p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>A substantial amount of work has
|
||||
been carried out on Logger forms, funded by the South West fisheries Science
|
||||
Center. </p>
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>A substantial amount of work has been
|
||||
carried out on Logger forms, funded by the South West fisheries Science Center.
|
||||
</p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'><i>Click Detector</i></p>
|
||||
|
||||
@ -3475,8 +3539,8 @@ inter-detection interval.</p>
|
||||
margin-left:36.0pt'> </p>
|
||||
|
||||
<p class=MsoNormal style='margin-top:0cm;margin-right:0cm;margin-bottom:0cm;
|
||||
margin-left:36.0pt'>Target Motion Analysis: Updated target motion analysis module
|
||||
so that it works in three (as opposed to two) dimensions.</p>
|
||||
margin-left:36.0pt'>Target Motion Analysis: Updated target motion analysis
|
||||
module so that it works in three (as opposed to two) dimensions.</p>
|
||||
|
||||
<p class=MsoNormal style='margin-top:0cm;margin-right:0cm;margin-bottom:0cm;
|
||||
margin-left:36.0pt'> </p>
|
||||
@ -3619,8 +3683,8 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bearings can be calculated using the envelope of the waveform rather than
|
||||
the full waveform. The waveform or envelope can also be filtered prior to
|
||||
</span>Bearings can be calculated using the envelope of the waveform rather
|
||||
than the full waveform. The waveform or envelope can also be filtered prior to
|
||||
bearing calculation.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
@ -3713,8 +3777,8 @@ the correct data stream. This has been fixed. </p>
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Whistle classifier has some new features in the classifier training
|
||||
panel. It is also now possible to export training data files directly from binary
|
||||
data files. </p>
|
||||
panel. It is also now possible to export training data files directly from
|
||||
binary data files. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -3841,14 +3905,14 @@ modules which resulted in a number of bugs which could cause confusion as to
|
||||
which hydrophones were being used during localisation or during calibrated
|
||||
measurement. The situation tended to only arise with a small number of ASIO
|
||||
sound cards such as the RME Fireface 400 on which the most useful inputs, the
|
||||
balanced line inputs, are hardware channels 4,5,6 and 7 on the back of the
|
||||
instrument. (On the Fireface 800, the balanced line inputs are channels 0 to
|
||||
7). When using the National Instruments system, data were always sent into the
|
||||
rest of PAMGUARD with sequential channel numbering starting at 0. This was
|
||||
required in order to support multiple NI Daq boards where it is possible to
|
||||
read for example channel 0 and 1 on two different devices, so to uniquely
|
||||
identify channels in the rest of PAMGUARD, the only rational thing to do was to
|
||||
re-label those channels 0,1,2,3. </p>
|
||||
balanced line inputs, are hardware channels 4,5,6 and 7 on the back of the instrument.
|
||||
(On the Fireface 800, the balanced line inputs are channels 0 to 7). When using
|
||||
the National Instruments system, data were always sent into the rest of
|
||||
PAMGUARD with sequential channel numbering starting at 0. This was required in
|
||||
order to support multiple NI Daq boards where it is possible to read for
|
||||
example channel 0 and 1 on two different devices, so to uniquely identify
|
||||
channels in the rest of PAMGUARD, the only rational thing to do was to re-label
|
||||
those channels 0,1,2,3. </p>
|
||||
|
||||
<p class=MsoNormal>There have been other annoyances with the ASIO channel
|
||||
numbering scheme. For instance, if you had a configuration which worked in real
|
||||
@ -3903,9 +3967,9 @@ more displays are set up for offline data viewing in future releases. </p>
|
||||
|
||||
<p class=MsoNormal>Viewer data map</p>
|
||||
|
||||
<p class=MsoNormal>When using the PAMGUARD viewer an additional panel will be
|
||||
displayed showing an overview of data quantity (per hour) from the various
|
||||
database tables connected to PAMGUARD. </p>
|
||||
<p class=MsoNormal>When using the PAMGUARD viewer an additional panel will be displayed
|
||||
showing an overview of data quantity (per hour) from the various database
|
||||
tables connected to PAMGUARD. </p>
|
||||
|
||||
<p class=MsoNormal>Spectrogram Display overlays</p>
|
||||
|
||||
@ -3965,12 +4029,12 @@ port is closed. Might prevent a few problems when using a GPS. </p>
|
||||
<p class=MsoNormal><b>Bug Fixes</b></p>
|
||||
|
||||
<p class=MsoNormal>Crashes caused in real time or Mixed Mode if the number of
|
||||
software channels exceeds the number of hydrophones configured in the array manager.
|
||||
It is of course illogical to have software channels which are not assigned to a
|
||||
hydrophone, so rather than entirely prevent PAMGUARD from crashing I have
|
||||
inserted additional checks into the hydrophone array dialog which will prevent
|
||||
the user from closing that dialog unless all software channels are assigned to
|
||||
a hydrophone. </p>
|
||||
software channels exceeds the number of hydrophones configured in the array
|
||||
manager. It is of course illogical to have software channels which are not
|
||||
assigned to a hydrophone, so rather than entirely prevent PAMGUARD from
|
||||
crashing I have inserted additional checks into the hydrophone array dialog
|
||||
which will prevent the user from closing that dialog unless all software
|
||||
channels are assigned to a hydrophone. </p>
|
||||
|
||||
<h2><span style='font-weight:normal'>Version 1.8.01 Beta February 2010</span></h2>
|
||||
|
||||
@ -4020,9 +4084,9 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>False buffer overflows at low sample rates stopped (size of data in individual
|
||||
data blocks had been increased at low sample rates, but when this exceeded 3s a
|
||||
false buffer overflow would occur).</p>
|
||||
</span>False buffer overflows at low sample rates stopped (size of data in
|
||||
individual data blocks had been increased at low sample rates, but when this
|
||||
exceeded 3s a false buffer overflow would occur).</p>
|
||||
|
||||
<p class=MsoNormal> </p>
|
||||
|
||||
@ -4072,8 +4136,8 @@ arrays to give two polar angle coordinates. this can be used to resolve left
|
||||
right ambiguity and is implemented for both the click and the whistle/moan
|
||||
detectors. As a result, the click detector bearing time display can now be set
|
||||
to go from -180 to 180 degrees rather than 0 - 180 degrees. In this case,
|
||||
clicks in the upper half of the bearing display will be to port and clicks in the
|
||||
right half will be to starboard. As you pass a whale which is to port, the
|
||||
clicks in the upper half of the bearing display will be to port and clicks in
|
||||
the right half will be to starboard. As you pass a whale which is to port, the
|
||||
clicks will move UP the display. In the long term, I hope to turn this display
|
||||
around so that time is up the screen rather than across. </p>
|
||||
|
||||
@ -4115,9 +4179,9 @@ display correctly and amplitude scale updates after scale parameter changes. </p
|
||||
|
||||
<p class=MsoNormal><b>Speed improvement</b>. </p>
|
||||
|
||||
<p class=MsoNormal>PAMGAURD FFT calculations now use the JTransforms FFT
|
||||
library which gives a factor 2 speed improvement compared to previous FFT
|
||||
methods used in PAMGUARD</p>
|
||||
<p class=MsoNormal>PAMGAURD FFT calculations now use the JTransforms FFT library
|
||||
which gives a factor 2 speed improvement compared to previous FFT methods used
|
||||
in PAMGUARD</p>
|
||||
|
||||
<p class=MsoNormal><b>New Modules</b></p>
|
||||
|
||||
@ -4364,8 +4428,8 @@ acquisition. </p>
|
||||
|
||||
<p class=MsoNormal><b>Bug fixes</b></p>
|
||||
|
||||
<p class=MsoNormal>Speed up of graphics, particularly regarding large quantities
|
||||
of gps track data</p>
|
||||
<p class=MsoNormal>Speed up of graphics, particularly regarding large
|
||||
quantities of gps track data</p>
|
||||
|
||||
<p class=MsoNormal>National Instruments cards with names > 20 characters
|
||||
long are now correctly recognised. </p>
|
||||
@ -4473,9 +4537,9 @@ localiser (affects stability of click train localiser and whistle localiser in <
|
||||
|
||||
<h2>1.2.0 Beta December 2008</h2>
|
||||
|
||||
<p class=MsoNormal>This release contains many bug fixes from the PAMGUARD
|
||||
industry field trial which took place in the Gulf of Mexico on the RV New
|
||||
Venture in November 2008.</p>
|
||||
<p class=MsoNormal>This release contains many bug fixes from the PAMGUARD industry
|
||||
field trial which took place in the Gulf of Mexico on the RV New Venture in
|
||||
November 2008.</p>
|
||||
|
||||
<p class=MsoNormal><b>Bug Fixes</b></p>
|
||||
|
||||
@ -4580,8 +4644,8 @@ mouse is moved over the display. Choice of colour maps for display. </p>
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Sound playback. Now supported in ASIO sound cards, so you can have sound
|
||||
coming in through the ASIO card and back out through its headphone socket
|
||||
(after passing through PAMGUARD filters and other modules) at the same time.</p>
|
||||
coming in through the ASIO card and back out through its headphone socket (after
|
||||
passing through PAMGUARD filters and other modules) at the same time.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -4601,11 +4665,11 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
|
||||
<p class=MsoNormal><b>Multithreading</b></p>
|
||||
|
||||
<p class=MsoNormal>PAMGUARD now processes data in each module in a different
|
||||
processing thread. This allows PAMGUARD to use both processor cores on dual or
|
||||
multi core processor machines. However, multithreading may still cause
|
||||
instability in some modules. An option is therefore accessible from the main
|
||||
Detection menu to enable and disable multithreading. </p>
|
||||
<p class=MsoNormal>PAMGUARD now processes data in each module in a different processing
|
||||
thread. This allows PAMGUARD to use both processor cores on dual or multi core
|
||||
processor machines. However, multithreading may still cause instability in some
|
||||
modules. An option is therefore accessible from the main Detection menu to
|
||||
enable and disable multithreading. </p>
|
||||
|
||||
<p class=MsoNormal><b>New Modules</b></p>
|
||||
|
||||
@ -4848,12 +4912,12 @@ and Ishmael-type detectors and localisers. </p>
|
||||
<p class=MsoNormal>Information from above modules can be displayed on
|
||||
configurable user displays which support real time scrolling spectrograms and
|
||||
radar displays. Detection and localisation information can be optionally
|
||||
displayed on the map display.Map enhancements include improved scrolling whereby
|
||||
the user can click and drag to pan the area. PamGuard can now interface with
|
||||
MySQL database servers and users can easily select which information is logged.
|
||||
(This replaces the previous 'flat-file' logging feature). A simulation module
|
||||
allows virtual vocalising animals to be placed on the map to assist in training
|
||||
and development. Extensive online user help has been added to PamGuard
|
||||
displayed on the map display.Map enhancements include improved scrolling
|
||||
whereby the user can click and drag to pan the area. PamGuard can now interface
|
||||
with MySQL database servers and users can easily select which information is
|
||||
logged. (This replaces the previous 'flat-file' logging feature). A simulation
|
||||
module allows virtual vocalising animals to be placed on the map to assist in
|
||||
training and development. Extensive online user help has been added to PamGuard
|
||||
Application</p>
|
||||
|
||||
<h2>0.03b - first version used in a real 'at sea' environment.18/08/06</h2>
|
||||
|
||||
@ -4,7 +4,7 @@
|
||||
<groupId>org.pamguard</groupId>
|
||||
<artifactId>Pamguard</artifactId>
|
||||
<name>Pamguard Java12+</name>
|
||||
<version>2.02.09e</version>
|
||||
<version>2.02.09f</version>
|
||||
<description>Pamguard for Java 12+, using Maven to control dependcies</description>
|
||||
<url>www.pamguard.org</url>
|
||||
<organization>
|
||||
|
||||
2
pom.xml
2
pom.xml
@ -4,7 +4,7 @@
|
||||
<modelVersion>4.0.0</modelVersion>
|
||||
<groupId>org.pamguard</groupId>
|
||||
<artifactId>Pamguard</artifactId>
|
||||
<version>2.02.09e</version>
|
||||
<version>2.02.09f</version>
|
||||
<name>Pamguard Java12+</name>
|
||||
<description>Pamguard for Java 12+, using Maven to control dependcies</description>
|
||||
<url>www.pamguard.org</url>
|
||||
|
||||
@ -31,12 +31,12 @@ public class PamguardVersionInfo {
|
||||
* Version number, major version.minorversion.sub-release.
|
||||
* Note: can't go higher than sub-release 'f'
|
||||
*/
|
||||
static public final String version = "2.02.09e";
|
||||
static public final String version = "2.02.09f";
|
||||
|
||||
/**
|
||||
* Release date
|
||||
*/
|
||||
static public final String date = "18 December 2023";
|
||||
static public final String date = "20 December 2023";
|
||||
|
||||
// /**
|
||||
// * Release type - Beta or Core
|
||||
|
||||
Loading…
Reference in New Issue
Block a user