* Update exporter_help.md
Updated help for exporter
* Update .gitignore
* Bug fixes for deep learning classifier.
Updated the symbol options to make sure opacity is passed through the symbol chooser.
* Updates to the data map FX display
* Updates to DelphinID and Data ModelFX
Used a new writable image for much faster drawing in FX
* bb
* Delete C:\Users\Jamie Macaulay\MATLAB Drive\MATLAB\PAMGUARD\deep_learning\delphinID\whistle_image_example_java.mat
* Updates to DelphinID
* Updates to ReadMe and JavaFX GUI
* Update readme.md
Updates to ReadMe
* Updates to CPOD module and also delphinID classifier
* Fix colour scaling in FX data map
* Create cpod_help.md
* Update cpod_help.md
* Update cpod_help.md
* Updates to CPOD module
Added ability to export CPOD clicks
Added some extra features to data selector
Swing GUI for data selector (in progress)
* Updates to data map FX GUI
* Updates to CPOD module
* Added help files resources for CPOD
* Add CPOD resources for help
* Add CPOD resources for help
* Add CPOD resources for help
* Add CPOD resources for help
* Add CPOD resources for help
* Update cpod_help.md
* Update cpod_help.md
* Bug fixes for deep learning classifier.
Updated the symbol options to make sure opacity is passed through the symbol chooser.
* Updates to the data map FX display
* Updates to DelphinID and Data ModelFX
Used a new writable image for much faster drawing in FX
* Updates to ReadMe and JavaFX GUI
* bb
* Delete C:\Users\Jamie Macaulay\MATLAB Drive\MATLAB\PAMGUARD\deep_learning\delphinID\whistle_image_example_java.mat
* Updates to DelphinID
* Update readme.md
Updates to ReadMe
* Fix colour scaling in FX data map
* Updates to CPOD module and also delphinID classifier
* Updates to CPOD module
Added ability to export CPOD clicks
Added some extra features to data selector
Swing GUI for data selector (in progress)
* Create cpod_help.md
* Update cpod_help.md
* Update cpod_help.md
* Updates to data map FX GUI
* Updates to CPOD module
* Added help files resources for CPOD
* Add CPOD resources for help
* Add CPOD resources for help
* Add CPOD resources for help
* Add CPOD resources for help
* Add CPOD resources for help
* Update cpod_help.md
* Update cpod_help.md
* Bug fix to BT display
The BT display was not selecting clicks properly.
* Import bug fix
* Updates to data map FX GUI
* Updates to datamap FX
* Got date axis working properly.
* Added some arrows to the scroll bar for data map FX pane.
* Working on getting datagrams in FX saving
* Updates to DataMapFX and exporting annotations
* Update MLAnnotationsManager.java
* Working on adding annotations to exporter
* Bug fix for processing files and annotations for exporter
Rebase with main
Bug fix for processing files - stops only the last file processing when "Start normally" selected on data processing
R and MATLAB export of data annotation added.
* Add a ttoltip to the exporter
* Minor text change
help for data export
fixes to fx symbol opacity
removal of too much print output
change of error message when plugins loaded (don't say there is an error when a plugin is not compatible with that run mode)
Added option for SourcePanel to have a null return value (not used in any current detectors)
And also change class loader for plugins to not initialise classes since it causes an error if a plugin is depenent on a class in a plugin not yet loaded
Fixed wav file export bug from TDDisplayFX
Fixed bug in deep learning classifier where binary classification was not saving properly for generic models.
commit f8d2de4482
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Dec 17 12:27:31 2023 +0000
Settings import (#117)
* Stop command
small change so command is available as a constant
* Lots of small updates to enable opening of a secondary configuration for
batch processing control.
* Fix user input bug in viewer
which created exponential copies of user comments!
* Adding TAST trigger alarm action
To be competed when GW provide correct string for interface
* Echo offline detection
Fix up affected datablocks for offline echo detection
* fix module import
System for importing modules from other psfx files was not working.
Probably wasn't working for quite some time. Now fixed.
commit b12ccf9c67
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 14 10:50:29 2023 +0000
Merge with main (#116)
* Stop command
small change so command is available as a constant
* Lots of small updates to enable opening of a secondary configuration for
batch processing control.
commit 840e6c89a1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Nov 16 20:36:14 2023 +0000
R2.02.09d
Fix matched template classifier import
fix azigram help file image display
commit acc806d375
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 15 13:08:02 2023 +0000
Updated X3 library to 2.2.6
commit a4f484c76c
Merge: 8e60ad2ed7c4c278
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 15 09:44:09 2023 +0000
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main
commit 8e60ad2eff
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 15 09:43:39 2023 +0000
update to array diagnostics and sensor control
commit d7c4c278d8
Author: m2oswald <45486636+m2oswald@users.noreply.github.com>
Date: Wed Nov 15 09:17:49 2023 +0000
Added code to Rocca for training/testing classifier (#114)
* allow Rocca to run without classifiers
Fixed bug that threw an error if no classifier files were specified in Rocca Params dialog
* add rocca switch to enable dev mode
currently only shows/hides extra buttons in the Params dialog, but will
extend to more options in the future
* Fix memory issue with RoccaContourDataBlocks not being released for
garbage collection
Set RoccaContourDataBlock objects to null and stop PamObserver Timer to
force release
* Fix problem tracing whistles in Rocca spectrogram pop-up
Whistle and raw data were being cleared before the user had time to trace out the whistle, causing PAMGuard to throw an exception. Both were already being cleared when the pop-up window is closed, so no need to do it here.
* updated for training/testing classifiers
commit d5f504dcd1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Nov 10 18:08:31 2023 +0000
Bearing localiser offline save
Bug stopping it correctly saving data from the offline task to the
database fixed.
commit 7a44d49e27
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Oct 27 09:59:28 2023 +0100
X3 Version 2.2.3
Add maven jar files for X3/SUD version 2.2.3
commit fa5fe9943d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Oct 26 14:44:41 2023 +0100
update sud file management to more efficiently skip to the correct part
of a sud file when reading data offline.
commit 60435e567a
Author: Brian S Miller <93690136+BrianSMiller@users.noreply.github.com>
Date: Fri Sep 8 21:54:40 2023 +1000
Fixes issues #111 and fixes#112 (DIFAR module crashes and ability to use Deep Learning Detections in DIFAR module) (#110)
* Bugfix for OverlayMarks
Check for a null pointer exception in OverlayMarks that was causing a crash on startup.
* Bugfix for null pointer in symbol manager
Fix a bug that I found where the DIFAR module was crashing the symbol manager. Seems that this was due to this subclass of clip generator having a null value for it's uniqueName. I've fixed by checking for null values and assigning a generic symbol when null.
* DeepLearning detections canGenerateClips=true
Set flag in DeepLearning detector so that detections are considered 'clips' by Pamguard. This allows them to be processed automatically in the DIFAR Localisation module (and maybe others).
* DIFAR: bugfix frequency limits for auto-detections
Fix a bug in DIFAR module where the frequency limits of automated detections were not being set properly by the DIFAR module.
* DeepLearning - Bugfix to detection duration
Fix bug in deep learning detector where duration (in samples) was being set to number of samples in a hop instead of the number of samples in a segment.
1) When a large template was imported only 1: fftLength of the mathc waveform was used and so clicks would be correlated with noise. The peak of the template is now used when the peak search function is selected.
2) The plus button in the tab pane had disappeared.
3) Seems like the decimators were the wrong round. So the waveforms were using an up sample function when they should have been using a decimator function. and vice versa...major bug when using different sample rates!
commit 840e6c89a1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Nov 16 20:36:14 2023 +0000
R2.02.09d
Fix matched template classifier import
fix azigram help file image display
commit acc806d375
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 15 13:08:02 2023 +0000
Updated X3 library to 2.2.6
commit a4f484c76c
Merge: 8e60ad2ed7c4c278
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 15 09:44:09 2023 +0000
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main
commit 8e60ad2eff
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 15 09:43:39 2023 +0000
update to array diagnostics and sensor control
commit d7c4c278d8
Author: m2oswald <45486636+m2oswald@users.noreply.github.com>
Date: Wed Nov 15 09:17:49 2023 +0000
Added code to Rocca for training/testing classifier (#114)
* allow Rocca to run without classifiers
Fixed bug that threw an error if no classifier files were specified in Rocca Params dialog
* add rocca switch to enable dev mode
currently only shows/hides extra buttons in the Params dialog, but will
extend to more options in the future
* Fix memory issue with RoccaContourDataBlocks not being released for
garbage collection
Set RoccaContourDataBlock objects to null and stop PamObserver Timer to
force release
* Fix problem tracing whistles in Rocca spectrogram pop-up
Whistle and raw data were being cleared before the user had time to trace out the whistle, causing PAMGuard to throw an exception. Both were already being cleared when the pop-up window is closed, so no need to do it here.
* updated for training/testing classifiers
commit d5f504dcd1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Nov 10 18:08:31 2023 +0000
Bearing localiser offline save
Bug stopping it correctly saving data from the offline task to the
database fixed.
commit 7a44d49e27
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Oct 27 09:59:28 2023 +0100
X3 Version 2.2.3
Add maven jar files for X3/SUD version 2.2.3
commit fa5fe9943d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Oct 26 14:44:41 2023 +0100
update sud file management to more efficiently skip to the correct part
of a sud file when reading data offline.
commit 60435e567a
Author: Brian S Miller <93690136+BrianSMiller@users.noreply.github.com>
Date: Fri Sep 8 21:54:40 2023 +1000
Fixes issues #111 and fixes#112 (DIFAR module crashes and ability to use Deep Learning Detections in DIFAR module) (#110)
* Bugfix for OverlayMarks
Check for a null pointer exception in OverlayMarks that was causing a crash on startup.
* Bugfix for null pointer in symbol manager
Fix a bug that I found where the DIFAR module was crashing the symbol manager. Seems that this was due to this subclass of clip generator having a null value for it's uniqueName. I've fixed by checking for null values and assigning a generic symbol when null.
* DeepLearning detections canGenerateClips=true
Set flag in DeepLearning detector so that detections are considered 'clips' by Pamguard. This allows them to be processed automatically in the DIFAR Localisation module (and maybe others).
* DIFAR: bugfix frequency limits for auto-detections
Fix a bug in DIFAR module where the frequency limits of automated detections were not being set properly by the DIFAR module.
* DeepLearning - Bugfix to detection duration
Fix bug in deep learning detector where duration (in samples) was being set to number of samples in a hop instead of the number of samples in a segment.
commit 30cd72e2e5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 20 11:59:49 2023 +0000
Update dependency-reduced-pom.xml
commit b5cf955cba
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 20 11:57:57 2023 +0000
Fix bug in Click Detector target motion analysis
Was crashing if not all click in event were loaded.
commit 269398890e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Jan 19 17:53:59 2023 +0000
2.02.07b
Fix ICI display bug in click detector
commit a89279ef81
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Jan 18 11:06:03 2023 +0000
V2.02.07a dB levels bug fix
Fixed bug in some level calculations where a channel map instead of a
single channel was being passed to the function performing the calcs.
Was OK if hydrophones had same gain, but got it wrong if they were
different.
commit e169ccb1a7
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jan 10 11:17:44 2023 +0000
Version 2.02.07
Final readme, POM and version numbering for release 2.02.07
commit 44da3ffb57
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jan 10 10:45:33 2023 +0000
Fix alarm module so it correctly uses Data Selectors
commit 8642834c1e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 6 17:07:34 2023 +0000
Embryonic data units
Data units flagged as embryonic don't get saved when first added to a
data block. will get saved when embryonic flag set false and an update
sent to the datablock. Useful when developing tracks which may continue
to grow as more data become available.
commit b1016c0cc8
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Dec 21 19:08:55 2022 +0000
Hide tool tips
Use Esc key to hide all Swing tooltips for 6 seconds. Works across
PAMGuard.
commit 4322b2d42b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 19 13:55:27 2022 +0000
Hide tooltips
Added option to help menu to hide all tooltips in the GUI.
commit 407e9d9d08
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 19 13:54:40 2022 +0000
Random Mystecete
Added a random Mystecete type call (random tonals < 1kHz) to the
simulator, which are vaguely humpback like sounds.
commit 0d48118487
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 19 13:53:44 2022 +0000
Fix streamer problem
Was not remembering the types (Fixed, Sensor, Default) of data being
used for sensor orientation of streamers.
commit bd0bed350c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 12 17:02:49 2022 +0000
Update version info to 2.02.06b
commit 4e0eab5d75
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 12 17:02:26 2022 +0000
Grid movement
Fix bug that threw null pointer if grid movement used on a simulated
object without a set name.
commit d27e4fb19f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 12 17:01:47 2022 +0000
click Offline toolbar
Make it show option to show only event clicks even if there are no click
classifications
commit fc9c70ad78
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 12 17:01:06 2022 +0000
Fix Gebco grid data overlay offset
commit 1be8a5ee83
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 12 17:00:19 2022 +0000
Fixed Landmarks
Debug so they don't disappear whenever viewer data are reloaded.
commit e7a67d33cf
Merge: 6995beec32d172
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Nov 27 14:44:48 2022 +0000
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main
commit 6995bee65b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Nov 27 14:44:19 2022 +0000
Logger LatLong
Fix a couple of issues which threw and error in the event of a bad NMEA
string.
commit c32d172000
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Nov 21 09:13:59 2022 +0000
ROCCA Fix (#90)
* Version 2.02.06
(hopefully)
* ROCCA Memory leak
Another attempt at healing ROCCA memory leak
commit 3203a0a50f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Nov 18 10:52:50 2022 +0000
Remove a few terminal outputs
Mostly with file analysis, to reduce junk on terminal
commit 6f6f7407ca
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Nov 18 09:55:17 2022 +0000
Ishmael bugs
couple of places where PamDatablock.getLastUnit() was being used without
synchronization and the unit was being deleted between the line checking
there was a unit there and a line attempting to use the unit. Now
correctly synched so will get a unit you can use, or null.
commit 35ee1e3dfc
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Nov 17 19:00:45 2022 +0000
Slipped in a last fix
after release to correctly size components in PamModel viewer which
weren't showing on hiDef correctly.
commit 5b1cc760d8
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 16 09:12:55 2022 +0000
Quick fix of calibration data for ST Click detector.
Was getting a 5V input from it's bespoke acquisition, whereas needs 2.
commit 3f5e4e4a79
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Nov 15 21:08:40 2022 +0000
Final final 2.02.06
Don't believe it until you see that tag
commit 890230a6ff
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Nov 15 17:49:06 2022 +0000
Final final readme 2.02.06
commit 05268d810d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Nov 15 17:40:44 2022 +0000
Version 2.02.06 (#87)
(hopefully)
commit 7d7ecb9545
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Nov 15 17:39:37 2022 +0000
Version 2.02.06 (#86)
(hopefully)
commit 76e8467201
Merge: d2f74f6ac280e1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Nov 15 17:37:14 2022 +0000
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main
commit d2f74f606e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Nov 15 17:36:49 2022 +0000
readme for 2.02.06
commit ac280e1b6f
Author: m2oswald <45486636+m2oswald@users.noreply.github.com>
Date: Tue Nov 15 15:41:43 2022 +0000
updates to Rocca module (#85)
* allow Rocca to run without classifiers
Fixed bug that threw an error if no classifier files were specified in Rocca Params dialog
* add rocca switch to enable dev mode
currently only shows/hides extra buttons in the Params dialog, but will
extend to more options in the future
* Fix memory issue with RoccaContourDataBlocks not being released for
garbage collection
Set RoccaContourDataBlock objects to null and stop PamObserver Timer to
force release
commit 655a546764
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Nov 14 15:56:00 2022 +0000
Update X3 Jar
commit 96cd32034f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Nov 14 15:55:37 2022 +0000
Delete x3-2.2.0.pom
commit bf90443b1b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Nov 14 15:55:28 2022 +0000
Delete x3-2.2.0.jar
commit 22d32b4682
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Nov 14 15:54:15 2022 +0000
Update x3 jar file
commit 14c5cf5afe
Merge: ccd0fc7376a9f0
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Nov 14 15:49:36 2022 +0000
Merge branch 'main' into main
commit 376a9f0f0e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Nov 14 14:30:04 2022 +0000
Reinstate x3 jar
commit 93193638b1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Nov 14 14:29:37 2022 +0000
Last changes to x3
commit ccd0fc7965
Author: m2oswald <45486636+m2oswald@users.noreply.github.com>
Date: Mon Nov 14 11:00:15 2022 +0000
small updates to Rocca (#84)
* allow Rocca to run without classifiers
Fixed bug that threw an error if no classifier files were specified in Rocca Params dialog
* add rocca switch to enable dev mode
currently only shows/hides extra buttons in the Params dialog, but will
extend to more options in the future
commit ea32c5cdcb
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Nov 13 17:41:13 2022 +0000
SUD Files (#83)
* Adding comments to table definitions.
Update tabledefs so tableitems can have descriptions. Useful to the
coder, but can also export formal xms schema for each table.
* Writing xml schema
Writing xml schema for PAMGuard database with annotations as complex
types
* Working SUD click extractor
Seems to be mostly working and can generate PAMGuard click files
automatically when processing SUD files using the soundtrap click
detector
* Small changes to SUD in PAMGuard
* Better SUD timing
Using latest microsecond time extraction from SUD unpack
* SUD Processing
Extraction of SUD file clicks with SoundTrap Click Detector. Timing now
correct. Added some help pages.
* Functional SUD Reader and SUD Click Extractor
All seems working. Seems to throw the odd exception at end of file, but
works OK.
commit f08cf4ffd7
Merge: d3277be4a75afc
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Nov 13 17:38:59 2022 +0000
Merge pull request #29 from PAMGuard/main
Memory leak fix
commit d3277be3b1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Nov 13 17:37:53 2022 +0000
Functional SUD Reader and SUD Click Extractor
All seems working. Seems to throw the odd exception at end of file, but
works OK.
commit d1af000040
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat Nov 12 19:21:57 2022 +0000
SUD Processing
Extraction of SUD file clicks with SoundTrap Click Detector. Timing now
correct. Added some help pages.
commit 4a75afc414
Merge: 3b053fffe0fe11
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Nov 11 20:59:10 2022 +0000
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main
commit 3b053ff342
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Nov 11 20:58:42 2022 +0000
Memory leak
Fix viewer memory leak whereby background measurements weren't being
cleared between data loads, so eventually ran out of memory.
commit 068a8b1a27
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Nov 11 08:56:03 2022 +0000
Better SUD timing
Using latest microsecond time extraction from SUD unpack
commit ee24c0ab6b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Nov 10 17:21:37 2022 +0000
Small changes to SUD in PAMGuard
commit 87cd2cd41f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Nov 10 15:20:15 2022 +0000
Working SUD click extractor
Seems to be mostly working and can generate PAMGuard click files
automatically when processing SUD files using the soundtrap click
detector
commit 61dd6ef4d1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Nov 8 16:42:57 2022 +0000
Writing xml schema
Writing xml schema for PAMGuard database with annotations as complex
types
commit fcdb64e467
Merge: a72e68cfe0fe11
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Nov 8 10:44:01 2022 +0000
Merge pull request #28 from PAMGuard/main
Fix to issue #80 (#81)
commit fe0fe11faf
Author: stabbutt <100229685+stabbutt@users.noreply.github.com>
Date: Tue Nov 8 01:02:52 2022 -0800
Fix to issue #80 (#81)
* Fix network sender since it was hopelessly out of date and did not send
data in the correct format. OK now, though only tested on NARW.
* Fix network sender since it was hopelessly out of date and did not send
data in the correct format. OK now, though only tested on NARW.
* Mods to support command line and Network control of PAMGuard and to
retrieve summary information from some modules.
* Fix issue #80: recording path command line override
* Allow RUNNOTHING bearing calculations
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit a72e68c26a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Nov 7 17:15:04 2022 +0000
Adding comments to table definitions.
Update tabledefs so tableitems can have descriptions. Useful to the
coder, but can also export formal xms schema for each table.
commit 3e717bd207
Merge: aa7f18ed2e69c5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Nov 4 15:09:47 2022 +0000
Merge pull request #27 from PAMGuard/main
Merge SUD changes from main
commit d2e69c507e
Merge: 4f734b7aa7f18e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Nov 4 15:09:40 2022 +0000
Merge branch 'main' into main
commit aa7f18eaa2
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 2 10:09:30 2022 +0000
SAIL CArd warnings
Don't display in dialog when in nogui mode. Write to terminal
commit 4f734b7775
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Oct 31 13:43:15 2022 +0000
Added sud file capability (#78)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
* Update DLModelWorker.java
* Create matched_click_classifer_help.md
* Update help files for matched click classifier
* Update matched_click_classifer_help.md
* Update matched_click_classifer_help.md
* New screenshots got help files
* New screenshot
* Update matched_click_classifer_help.md
New help file for the matched click classified.
* Update matched_click_classifer_help.md
* Squashed commit of the following:
commit 6b15b3d536
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 15:21:28 2022 +0100
Change min java version to 11 which should be ok on some embedded
systems.
commit 4b3a37636b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 14:30:46 2022 +0100
CTD Fixes
Couple more fixes to menus and datablock selection
commit c641c58e4f
Author: Jamie Mac <macster110@gmail.com>
Date: Tue Aug 23 14:19:28 2022 +0100
Bug fixes to click train detector (#51)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised …
* Bug fixes to the matched click classifier
The matched click classifier was not working when an in built click classifier was used. This was caused by an index out of bounds exception in the alarm system.
Added new features;
* The Time base display now exports sample rate to .mat files.
* Bug fix file separator on time base display so it works on mac and Linux
* Matched click classifier imports the first click in a list of click structures as a template.
* Changed default length for restricted bins to 2048.
* Add picture for help file
* Update matched_click_classifer_help.md
* Update matched_click_classifer_help.md
* Squashed commit of the following:
commit b01cb4d100
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 13 11:19:31 2022 +0100
Fix bug in 3DOffline task
Problems with making catalogue of offline tasks. not important for now,
but needs revisiting.
commit ae6e2f947b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 13 09:12:34 2022 +0100
Merge Dougs fork (#53)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
* Daylight saving problem
Fix daylight saving problem in generation of timestamps in SQLTypes. See long explanation in SQLTypes.java. Only occurred in the hour after daylight saving starts.
commit cd89c65d7c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 13 09:07:11 2022 +0100
Fix synchronization problem in RawDataTransfroms
commit 6b15b3d536
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 15:21:28 2022 +0100
Change min java version to 11 which should be ok on some embedded
systems.
commit 4b3a37636b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 14:30:46 2022 +0100
CTD Fixes
Couple more fixes to menus and datablock selection
commit c641c58e4f
Author: Jamie Mac <macster110@gmail.com>
Date: Tue Aug 23 14:19:28 2022 +0100
Bug fixes to click train detector (#51)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+…
* Fixes to click train detector and deep learning
* Squashed commit of the following:
commit 313ce0c46f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Sep 21 15:55:12 2022 +0100
Help update (#60)
* Plugin Help
Small change to Help system so that plugins under development can more
easily display their help
* PamModel update
Notes on how to add a plugin to the model during the plugin development
phase.
* Click Train Detector Help
* Help for backup manager
commit 290f2fbb95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Sep 21 15:54:01 2022 +0100
Click Train Detector help (#59)
* Plugin Help
Small change to Help system so that plugins under development can more
easily display their help
* PamModel update
Notes on how to add a plugin to the model during the plugin development
phase.
* Click Train Detector Help
* Help for backup manager
commit 6aefbc124b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 20 17:34:30 2022 +0100
Merge from DG fork (#58)
* Plugin Help
Small change to Help system so that plugins under development can more
easily display their help
* PamModel update
Notes on how to add a plugin to the model during the plugin development
phase.
commit eb176a4568
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:10:09 2022 +0100
Merge from dg (#57)
commit dee7e1d52e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:08:32 2022 +0100
Merge pull request #13 from PAMGuard/main (#56)
commit 1ed74bebe3
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:06:22 2022 +0100
Merge pull request #13 from PAMGuard/main (#55)
commit fbe39a7416
Merge: 0114c80425dd21
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:05:16 2022 +0100
Merge branch 'main' into main
commit 425dd21d9f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:01:45 2022 +0100
Data selector for whistle classifier
Added standard data selection options to whistle classifier output, and
also made it a 'Detector' type for down stream data connections
commit 0114c80d61
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 16:59:37 2022 +0100
Work on click train detector help
commit c8e271734f
Author: Jamie Mac <macster110@gmail.com>
Date: Thu Sep 15 09:18:48 2022 +0100
Bug fixes to matched click classifier (#54)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher t…
* fix bug in TDOA
* Squashed commit of the following:
commit 149dfab281
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 30 09:56:13 2022 +0100
Work on bug fixes in CTD classifier (#72)
commit 91a704b07a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 30 09:54:33 2022 +0100
Work on bug fixes in CTD classifier (#71)
commit d01576c855
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 30 09:53:51 2022 +0100
Work on bug fixes in CTD classifier (#70)
commit 11bed6ffba
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 29 14:56:29 2022 +0100
Work on bug fixes in CTD classifier (#69)
commit fccc0a715d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 29 14:54:30 2022 +0100
Work on bug fixes in CTD classifier
commit 5983f30ded
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 27 16:44:12 2022 +0100
Delete C:\temp\PamGuardTesting 2_02_04f\PAMBinary directory
Get rid of a folder of pgdf files that Jamie had added to the repo
commit 075aceb4aa
Author: Jamie Mac <macster110@gmail.com>
Date: Tue Sep 27 16:41:05 2022 +0100
Click train detector bug fix (#68)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
…
* Click train fixes
* Fixes to click train detector
* Squashed commit of the following:
commit 3a452936c0
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 30 14:50:33 2022 +0100
Fixes from DG (#74)
* Work on bug fixes in CTD classifier
* couple of final neatenings up of CTD
commit 4015461fbc
Author: Jamie Mac <macster110@gmail.com>
Date: Fri Sep 30 14:23:17 2022 +0100
Fixes to click train detector (#73)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
…
* Fix to click train detector
NO_SPECIES flag was not being in standard classifier so beaked whales were being classified.
* Getting sud files working
* .sud decompression implemented
Sud decompression implemented in real time and viewer mode. .sudx files hold a file map which is reloaded allowing rapid scrolling of sud files in viewer mode.
* Rewrite how PAMGuard manages Audio Files
PAMGuard audio file management is a mess (sorry Doug) requiring changes to code in at least 3 separate classes to make a new type of audio file work in real time and viewer mode.
Have consolidated all audio file stuff into a PamAudioFileManager class which has a static getInstance() function. Any new type of audio file added in future (e.g. next is probably AudioMoth triggered recordings) then all that is needed is the Interface PamAudioFileloader to be satisfied and added to PamAudioFileManager list of audio file loaders.
* Bug fix for sud in viewer mode and FX updates
Fixed bug in sud file where IO exception occurred at the end of a file in viewer mode.
Updates to click detector dialog in FX GUI.
Updates to example sound factory.
* Some more work on FX GUI
* Added some validators in FX GUI
ValidatorFX is awesome
* Updates to FX GUI
* Squashed commit of the following:
commit 67060016c2
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Oct 21 12:26:42 2022 +0100
REsolve issues in binayUIDFunctions
commit 61c3d80f30
Merge: 1de5ec64473d1b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Oct 21 12:23:08 2022 +0100
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main
commit 1de5ec6e11
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Oct 21 12:22:09 2022 +0100
Change error reporting in Binary UID functions
Message on screen rather than stack trace since it's normal when a psfx
moves to a different pc
commit 4473d1b1bf
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Oct 21 11:12:04 2022 +0100
Merge from DG (#77)
* Work on bug fixes in CTD classifier
* couple of final neatenings up of CTD
* DWV Import
Fixed DWV importer so that a binary file is still created if a DWV file
doesn't exist. this is totally normal in quiet conditions, so the
correct thing to do is to generate a binary file with no data so that
effort is correctly recorded.
* Error reporting in -nogui
A lot of warnings were being issued and trying to use the default window
which caused a null pointer when running -nogui. This is fixed by a) not
trying to access frames which are null and b) changing the PAMWarning
system to write messages to terminal rather than open a dialog.
commit 63cc66a4b1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Oct 18 17:04:16 2022 +0100
Merge from DG (#76)
* Work on bug fixes in CTD classifier
* couple of final neatenings up of CTD
* DWV Import
Fixed DWV importer so that a binary file is still created if a DWV file
doesn't exist. this is totally normal in quiet conditions, so the
correct thing to do is to generate a binary file with no data so that
effort is correctly recorded.
commit e4faed5cfc
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Oct 4 11:18:37 2022 +0100
Add exitnosave command
Add command for UDP or terminal control which will exit PAMGuard without
first saving the settings
commit f4f7cc59b6
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Oct 3 14:30:22 2022 +0100
Fix to click trian detector (#75)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
…
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit 30793b55b0
Merge: abc33ad63cc66a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Oct 21 11:11:03 2022 +0100
Merge pull request #26 from PAMGuard/main
Merge from DG (#76)
commit abc33adbfd
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Oct 21 11:09:35 2022 +0100
Error reporting in -nogui
A lot of warnings were being issued and trying to use the default window
which caused a null pointer when running -nogui. This is fixed by a) not
trying to access frames which are null and b) changing the PAMWarning
system to write messages to terminal rather than open a dialog.
commit 0029fbb1c1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Oct 18 17:02:49 2022 +0100
DWV Import
Fixed DWV importer so that a binary file is still created if a DWV file
doesn't exist. this is totally normal in quiet conditions, so the
correct thing to do is to generate a binary file with no data so that
effort is correctly recorded.
commit 15d4468a0e
Merge: 6827150e4faed5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Oct 4 11:19:37 2022 +0100
Merge pull request #25 from PAMGuard/main
Merge changes from main
commit 682715018f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 30 14:49:33 2022 +0100
couple of final neatenings up of CTD
commit de809b6572
Merge: cc003c14015461
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 30 14:24:34 2022 +0100
Merge pull request #24 from PAMGuard/main
Fixes to click train detector (#73)
commit cc003c167a
Merge: 55cd735149dfab
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 30 14:10:59 2022 +0100
Merge pull request #23 from PAMGuard/main
Work on bug fixes in CTD classifier (#72)
commit 55cd735ec3
Merge: f899d0191a704b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 30 09:55:32 2022 +0100
Merge pull request #22 from PAMGuard/main
merge main
commit f899d01a41
Merge: 83f1343fccc0a7
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 29 14:55:24 2022 +0100
Merge pull request #21 from PAMGuard/main
Work on bug fixes in CTD classifier
commit 83f1343b02
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 29 14:54:52 2022 +0100
Work on bug fixes in CTD classifier
commit 481315187f
Merge: 570479e5983f30
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 27 16:57:54 2022 +0100
Merge pull request #20 from PAMGuard/main
Get CTD bug fix
commit 570479efcf
Merge: ec4082ecf4c97a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 23 11:47:13 2022 +0100
Merge pull request #19 from PAMGuard/main
CTD Data Selector fixes (#66)
commit 313ce0c46f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Sep 21 15:55:12 2022 +0100
Help update (#60)
* Plugin Help
Small change to Help system so that plugins under development can more
easily display their help
* PamModel update
Notes on how to add a plugin to the model during the plugin development
phase.
* Click Train Detector Help
* Help for backup manager
commit 290f2fbb95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Sep 21 15:54:01 2022 +0100
Click Train Detector help (#59)
* Plugin Help
Small change to Help system so that plugins under development can more
easily display their help
* PamModel update
Notes on how to add a plugin to the model during the plugin development
phase.
* Click Train Detector Help
* Help for backup manager
commit 6aefbc124b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 20 17:34:30 2022 +0100
Merge from DG fork (#58)
* Plugin Help
Small change to Help system so that plugins under development can more
easily display their help
* PamModel update
Notes on how to add a plugin to the model during the plugin development
phase.
commit eb176a4568
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:10:09 2022 +0100
Merge from dg (#57)
commit dee7e1d52e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:08:32 2022 +0100
Merge pull request #13 from PAMGuard/main (#56)
commit 1ed74bebe3
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:06:22 2022 +0100
Merge pull request #13 from PAMGuard/main (#55)
commit fbe39a7416
Merge: 0114c80425dd21
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:05:16 2022 +0100
Merge branch 'main' into main
commit 425dd21d9f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:01:45 2022 +0100
Data selector for whistle classifier
Added standard data selection options to whistle classifier output, and
also made it a 'Detector' type for down stream data connections
commit 0114c80d61
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 16:59:37 2022 +0100
Work on click train detector help
commit c8e271734f
Author: Jamie Mac <macster110@gmail.com>
Date: Thu Sep 15 09:18:48 2022 +0100
Bug fixes to matched click classifier (#54)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
* Update DLModelWorker.java
* Create matched_click_classifer_help.md
* Update help files for matched click classifier
* Update matched_click_classifer_help.md
* Update matched_click_classifer_help.md
* New screenshots got help files
* New screenshot
* Update matched_click_classifer_help.md
New help file for the matched click classified.
* Update matched_click_classifer_help.md
* Squashed commit of the following:
commit 6b15b3d536
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 15:21:28 2022 +0100
Change min java version to 11 which should be ok on some embedded
systems.
commit 4b3a37636b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 14:30:46 2022 +0100
CTD Fixes
Couple more fixes to menus and datablock selection
commit c641c58e4f
Author: Jamie Mac <macster110@gmail.com>
Date: Tue Aug 23 14:19:28 2022 +0100
Bug fixes to click train detector (#51)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised …
* Bug fixes to the matched click classifier
The matched click classifier was not working when an in built click classifier was used. This was caused by an index out of bounds exception in the alarm system.
Added new features;
* The Time base display now exports sample rate to .mat files.
* Bug fix file separator on time base display so it works on mac and Linux
* Matched click classifier imports the first click in a list of click structures as a template.
* Changed default length for restricted bins to 2048.
* Add picture for help file
* Update matched_click_classifer_help.md
* Update matched_click_classifer_help.md
* Squashed commit of the following:
commit b01cb4d100
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 13 11:19:31 2022 +0100
Fix bug in 3DOffline task
Problems with making catalogue of offline tasks. not important for now,
but needs revisiting.
commit ae6e2f947b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 13 09:12:34 2022 +0100
Merge Dougs fork (#53)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
* Daylight saving problem
Fix daylight saving problem in generation of timestamps in SQLTypes. See long explanation in SQLTypes.java. Only occurred in the hour after daylight saving starts.
commit cd89c65d7c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 13 09:07:11 2022 +0100
Fix synchronization problem in RawDataTransfroms
commit 6b15b3d536
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 15:21:28 2022 +0100
Change min java version to 11 which should be ok on some embedded
systems.
commit 4b3a37636b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 14:30:46 2022 +0100
CTD Fixes
Couple more fixes to menus and datablock selection
commit c641c58e4f
Author: Jamie Mac <macster110@gmail.com>
Date: Tue Aug 23 14:19:28 2022 +0100
Bug fixes to click train detector (#51)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+…
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit bad3f79903
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Sep 14 11:32:31 2022 +0100
Added help file for matched click classifier (#52)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
* Update DLModelWorker.java
* Create matched_click_classifer_help.md
* Update help files for matched click classifier
* Update matched_click_classifer_help.md
* Update matched_click_classifer_help.md
* New screenshots got help files
* New screenshot
* Update matched_click_classifer_help.md
New help file for the matched click classified.
* Update matched_click_classifer_help.md
* Squashed commit of the following:
commit 6b15b3d536
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 15:21:28 2022 +0100
Change min java version to 11 which should be ok on some embedded
systems.
commit 4b3a37636b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 14:30:46 2022 +0100
CTD Fixes
Couple more fixes to menus and datablock selection
commit c641c58e4f
Author: Jamie Mac <macster110@gmail.com>
Date: Tue Aug 23 14:19:28 2022 +0100
Bug fixes to click train detector (#51)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised …
* Bug fixes to the matched click classifier
The matched click classifier was not working when an in built click classifier was used. This was caused by an index out of bounds exception in the alarm system.
Added new features;
* The Time base display now exports sample rate to .mat files.
* Bug fix file separator on time base display so it works on mac and Linux
* Matched click classifier imports the first click in a list of click structures as a template.
* Changed default length for restricted bins to 2048.
* Add picture for help file
* Update matched_click_classifer_help.md
* Update matched_click_classifer_help.md
* Squashed commit of the following:
commit b01cb4d100
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 13 11:19:31 2022 +0100
Fix bug in 3DOffline task
Problems with making catalogue of offline tasks. not important for now,
but needs revisiting.
commit ae6e2f947b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 13 09:12:34 2022 +0100
Merge Dougs fork (#53)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
* Daylight saving problem
Fix daylight saving problem in generation of timestamps in SQLTypes. See long explanation in SQLTypes.java. Only occurred in the hour after daylight saving starts.
commit cd89c65d7c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 13 09:07:11 2022 +0100
Fix synchronization problem in RawDataTransfroms
commit 6b15b3d536
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 15:21:28 2022 +0100
Change min java version to 11 which should be ok on some embedded
systems.
commit 4b3a37636b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 14:30:46 2022 +0100
CTD Fixes
Couple more fixes to menus and datablock selection
commit c641c58e4f
Author: Jamie Mac <macster110@gmail.com>
Date: Tue Aug 23 14:19:28 2022 +0100
Bug fixes to click train detector (#51)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+…
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit 368fcbfc61
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Aug 24 10:40:12 2022 +0100
Daylight saving problem
Fix daylight saving problem in generation of timestamps in SQLTypes. See long explanation in SQLTypes.java. Only occurred in the hour after daylight saving starts.
commit 889fae8163
Merge: c1822796b15b3d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 15:22:56 2022 +0100
Merge pull request #12 from PAMGuard/main
Change min java version to 11 which should be ok on some embedded
commit c182279d38
Merge: 5369df64b3a376
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 14:50:08 2022 +0100
Merge pull request #11 from PAMGuard/main
Fixes to CTD
commit 5369df60df
Merge: f640d865a37bfe
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:18:21 2022 +0100
Merge pull request #10 from PAMGuard/main
Changes from main
commit f640d86e9c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 16 09:39:40 2022 +0100
Backup manager bug
Error if no database. Fixed.
commit f3ae5c9c4a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 15 11:57:14 2022 +0100
Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
commit 41447dc7e0
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 5 12:48:32 2022 +0100
Multiport test
Quick tester for multiport comms
commit 5fb4a516fd
Merge: 2ade43bb4bdae9
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 5 09:49:56 2022 +0100
Merge pull request #9 from PAMGuard/main
Scroll to ...
commit 2ade43baa3
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 12:50:21 2022 +0100
Fix to getVersion()
So new version of this command should now work on Linux and Windows.
commit 25b28e7055
Author: Doug Gillespie <dg50@st-andrews.ac.uk>
Date: Thu Aug 4 12:28:47 2022 +0100
Java version
Changes unpacker to deal with non numeric characters on Linux
commit b6b0756005
Merge: a16d1d611ba8bf
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:46:44 2022 +0100
Merge pull request #8 from PAMGuard/main
Merge from main
commit a16d1d6eef
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Aug 3 13:20:43 2022 +0100
UDP Control
Added multiport functionality
commit 9760c6bfc5
Merge: 907a3af55f5a3f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:11:39 2022 +0100
Merge pull request #7 from PAMGuard/main
Merge from main
commit 907a3af77b
Merge: 5d20f3157de35e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:51:00 2022 +0100
Merge branch 'main' of https://github.com/douggillespie/PAMGuard
commit 5d20f311e2
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:50:46 2022 +0100
Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 57de35e966
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 26 18:43:54 2022 +0100
Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
commit 4756fe68bc
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 26 15:41:35 2022 +0100
Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
commit 1a2625dee6
Merge: 6a6026b0cb32a7
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 26 08:22:16 2022 +0100
Merge branch 'main' of https://github.com/douggillespie/PAMGuard
commit 6a6026b152
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 26 08:22:07 2022 +0100
Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
commit 0cb32a7df3
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 17:12:02 2022 +0100
Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
commit 9a314b8a6b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:28:58 2022 +0100
Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit fa00268ca3
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:18:29 2022 +0100
Fix problem of nogui headless operation trying to access screen size.
commit 079097e9ef
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:15:42 2022 +0100
Code to support nogui operations when no screens present on headless
system
commit f25003047a
Merge: c233dc2b916209
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:51:41 2022 +0100
Merge pull request #6 from PAMGuard/main
Better GoTo options for click events and groupdetections
commit c233dc2594
Merge: b829ab0847cff4
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:47:48 2022 +0100
Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main
commit b829ab0413
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:46:03 2022 +0100
Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
commit 847cff413d
Merge: db68a8c1739bd6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jun 24 12:31:51 2022 +0100
Merge pull request #5 from PAMGuard/main
Mere from main
commit db68a8c2e7
Merge: 6ffc8077e1420a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jun 24 12:27:15 2022 +0100
Merge pull request #4 from PAMGuard/main
Merge in chanes from main
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Updates to FX GUI
* Bug fixes
Click train detector now registers click train if there are no longer any click detections for a significant period of time.
Jitter in wrap spectrogram for TDisplayFX fixed
Deep learning module compatible with bearing localiser
Updates to FX GUI
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
Jamie Mac