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Final final 2.02.06
Don't believe it until you see that tag
This commit is contained in:
Douglas Gillespie
parent
890230a6ff
commit
3f5e4e4a79
260
README.html
260
README.html
@ -469,7 +469,7 @@ whistle classification module.</span></p>
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SoundTrap autonomous recorders from Ocean Instruments, you no longer need to
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decompress the SoundTrap files prior to processing. This will save time and a
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lot of disk space. Extraction of clicks from the inbuilt SoundTrap Click
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detector an also happen while processing SUD file data with other detectors,
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detector can also happen while processing SUD file data with other detectors,
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thereby streamlining the whole processing chain. Read the online Help for
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details. </span></p>
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@ -488,10 +488,10 @@ system to have nested classifiers which can be enabled or disabled. </span></p>
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<p class=MsoNormal><span lang=EN-US>Changes to classification GUI to
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accommodate the new classification system.</span></p>
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<p class=MsoNormal><span lang=EN-US>Addition of data selectors to the minimum
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number of clicks accepted by the classifier. This allows the click-by-click
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classifier and the click train detector to be used to together to improve
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classification accuracy. </span></p>
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<p class=MsoNormal><span lang=EN-US>Addition of data selectors to the minimum number
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of clicks accepted by the classifier. This allows the click-by-click classifier
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and the click train detector to be used to together to improve classification
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accuracy. </span></p>
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<p class=MsoNormal><b><span lang=EN-US>Bug fixes</span></b></p>
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@ -503,8 +503,8 @@ classifier was being trimmed. </span></p>
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<p class=MsoNormal><b><span lang=EN-US>Documentation</span></b></p>
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<p class=MsoNormal><span lang=EN-US>Comprehensive help file including description
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of the algorithm, screen grabs and examples.</span></p>
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<p class=MsoNormal><span lang=EN-US>Comprehensive help file including
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description of the algorithm, screen grabs and examples.</span></p>
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<p class=MsoNormal><span lang=EN-US>Bug fixes</span></p>
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@ -639,9 +639,9 @@ href="http://www.pamguard.org/downloads.php?cat_id=3">here</a>.</p>
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lang=EN-US> </span></p>
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<p class=MsoNormal>This module has been renamed ÂDetection GrouperÂ, so
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as to avoid confusion with the Group 3D localizer. This is because the Detection
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Grouper is more for organizing data into groups to be localized than it is for
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doing localization.</p>
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as to avoid confusion with the Group 3D localizer. This is because the
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Detection Grouper is more for organizing data into groups to be localized than
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it is for doing localization.</p>
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<p class=MsoNormal><b><span lang=EN-US>Minor Bug Fixes</span></b><span
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lang=EN-US> </span></p>
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@ -1069,11 +1069,10 @@ placement, etc.</p>
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<h1><a name="_Latest_Beta_Version_2.01.03"></a><span lang=EN-US>Version 2.01.03
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February 2020</span></h1>
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<p class=MsoNormal><b>If you are upgrading from a PAMGuard core release
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(1.15.xx), PAMGuard Version 2 contains major updates. You should read and
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understand the notes listed for <a href="#_Latest_Beta_Version_2.00.10">Beta
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Version 2.00.10</a> before proceeding with installation and use of this
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version.</b></p>
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<p class=MsoNormal><b>If you are upgrading from a PAMGuard core release (1.15.xx),
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PAMGuard Version 2 contains major updates. You should read and understand the
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notes listed for <a href="#_Latest_Beta_Version_2.00.10">Beta Version 2.00.10</a>
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before proceeding with installation and use of this version.</b></p>
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<p class=MsoNormal>This version of PAMGuard has been bundled with Java 13
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(release 13.0.1). PSFX files generated in previous beta releases (2.xx.xx)
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@ -1128,8 +1127,9 @@ lang=EN-US> </span>Bug 442. BT Display does not change click symbol color when
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Colour By Superdetection is selected.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>11. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Bug 443. NI playback crashing immediately if a device is not present.</p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Bug 443. NI playback crashing immediately if a device is not
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present.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>12. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -1138,8 +1138,8 @@ files.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>13. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Bug 445. Overlay data in FX spectrogram display gets out of sync with
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underlying spectrogram image.</p>
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Bug 445. Overlay data in FX spectrogram display gets out of sync with underlying
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spectrogram image.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>14. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -1178,9 +1178,9 @@ Added option in Sound Acquisition settings dialog to override filename time
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stamp and use PC local time instead. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Add option to Whistle & Moan Detector data selector to only display
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whistles that have super-detections. </p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Add option to Whistle & Moan Detector data selector to
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only display whistles that have super-detections. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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@ -1288,8 +1288,9 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
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lang=EN-US> </span>Difar enhancements based on recent field testing.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Click Train Detector upgrades, including localisation capabilities.</p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Click Train Detector upgrades, including localisation
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capabilities.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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@ -1392,9 +1393,9 @@ lang=EN-US> </span>Added adaptive noise filter to Ishmael Detectors.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Many upgrades to the Sound Playback module, including a
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high-pass filter, gain control, and the ability to mix wavefrom and envelope
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data together to listen to high-frequency clicks and dolphin whistles at the
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same time.</p>
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high-pass filter, gain control, and the ability to mix wavefrom and envelope data
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together to listen to high-frequency clicks and dolphin whistles at the same
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time.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -1978,8 +1979,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
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Added sound playback and other useful information to bar on FX display</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Updates/bug fixes to the landmark module. </p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Updates/bug fixes to the landmark module. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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@ -2107,8 +2108,8 @@ lang=EN-US> </span></p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1.</span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span><span lang=EN-US>Bug 317. Rocca Module Data Purging. </span>The ROCCA
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module was not performing data purging when using classifiers developed for
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</span><span lang=EN-US>Bug 317. Rocca Module Data Purging. </span>The ROCCA module
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was not performing data purging when using classifiers developed for
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Hawaii/Temperate Pacific/North Atlantic datasets. This has been corrected.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
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@ -2140,8 +2141,8 @@ parameters to Event classifier</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4.</span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>The installer now allows the user to enter command line switches/parameters
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to be included in *.ini files.</p>
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</span>The installer now allows the user to enter command line
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switches/parameters to be included in *.ini files.</p>
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<h1><a name="_Version_1.15.10"></a><span lang=EN-US>Version 1.15.10 March 2017</span></h1>
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@ -2155,8 +2156,8 @@ list grew to a ridiculous size. Code has been put in place to a) stop it
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happening again and b) to repair any configuration files which are corrupted.
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Corrupted files will be slow to load, slow to save and will be > several
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megabytes in size. It may be necessary to delete the PamguardSettings table in
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any databases since these too may have become oversized which will slow down
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viewer mode PAMGuard start-up.</p>
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any databases since these too may have become oversized which will slow down viewer
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mode PAMGuard start-up.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -2219,9 +2220,9 @@ jar file will be required rather than a new bespoke PAMGuard installation.</span
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unchanged, in most cases simply requiring the addition of an interface class.
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Instructions for the development of new modules utilizing the plug-in
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scheme can be found <a href="http://www.pamguard.org/16_HowtomakePlug-Ins.html"
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target="_blank">here</a>. Plug-in modules can be downloaded from the PAMGuard
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website here, but developers are encouraged to host and maintain their own
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modules.</span></p>
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target="_blank">here</a>. Plug-in modules can be downloaded from the
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PAMGuard website here, but developers are encouraged to host and maintain their
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own modules.</span></p>
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<p class=MsoNormal><span lang=EN-US>Modules of interest to the general PAM
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community will remain as part of the core PAMGuard installation. However,
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@ -2313,8 +2314,8 @@ until now. It's fixed.</p>
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<p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>2.<span
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style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Bug 292. Incorrect labels on Target Motion panel in viewer - 3D algorithm
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was labelled as 2D.Fixed</p>
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</span>Bug 292. Incorrect labels on Target Motion panel in viewer - 3D
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algorithm was labelled as 2D.Fixed</p>
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<p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>3.<span
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style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -2343,8 +2344,8 @@ appear when you right click on the display. </p>
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<p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>7.<span
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style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Bug 297. Airgun display was not correctly showing itself at fixed locations,
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but always following the vessel track. This is now fixed. </p>
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</span>Bug 297. Airgun display was not correctly showing itself at fixed
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locations, but always following the vessel track. This is now fixed. </p>
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<p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>8.<span
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style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -2410,8 +2411,8 @@ the database. </span></p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span><span lang=EN-US>The number of data streams associated with the click
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detector has been tidied up so that there are a) All Click, b) Tracked Clicks (those
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which are part of an event) and c) Events. </span></p>
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detector has been tidied up so that there are a) All Click, b) Tracked Clicks
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(those which are part of an event) and c) Events. </span></p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -2604,8 +2605,8 @@ and datagram creation.</p>
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<h1><a name="_Toc444450394"></a><span lang=EN-US>Version 1.15.00 February 2016</span></h1>
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<p class=MsoNormal><span lang=EN-US>Beta Version 1.15.00 64 bit and Core
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version 1.15.00 32 bit. Both using identical Java core software but linking to
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<p class=MsoNormal><span lang=EN-US>Beta Version 1.15.00 64 bit and Core version
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1.15.00 32 bit. Both using identical Java core software but linking to
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different libraries for control of sound input devices. </span></p>
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<p class=MsoNormal><span lang=EN-US>This is the first release of a 64 bit
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@ -2617,8 +2618,8 @@ problems immediately to the PAMGuard team. </span></p>
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<p class=MsoNormal><b><span lang=EN-US>Other Changes</span></b></p>
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<p class=MsoNormal><span lang=EN-US>Updated the configuration file WMM.COF for World
|
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Magnetic Model to the latest 2015-2020 version. See
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<p class=MsoNormal><span lang=EN-US>Updated the configuration file WMM.COF for
|
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World Magnetic Model to the latest 2015-2020 version. See
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https://www.ngdc.noaa.gov/geomag/WMM/soft.shtml</span></p>
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<p class=MsoNormal><span lang=EN-US>Small changes to the ROCCA classification
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@ -2766,8 +2767,8 @@ events. </span></p>
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<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'><span
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lang=EN-US>5.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span><span lang=EN-US>Bug 250. DIFAR module was crashing if it attempted to
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triangulate between more than two simultaneous bearings. Fixed. </span></p>
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</span><span lang=EN-US>Bug 250. DIFAR module was crashing if it attempted to triangulate
|
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between more than two simultaneous bearings. Fixed. </span></p>
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<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'><span
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lang=EN-US>6.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -2826,8 +2827,8 @@ writing results files. Fixed. </p>
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<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'><span
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lang=EN-US>7.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
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</span>Bug 237. Logger forms not saving data to database after sound acquisition
|
||||
starts. Fixed. </p>
|
||||
</span>Bug 237. Logger forms not saving data to database after sound
|
||||
acquisition starts. Fixed. </p>
|
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||||
<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>8.<span
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style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -2868,17 +2869,17 @@ which is useful when using PAMGuard for demonstration purposes. </p>
|
||||
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<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
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lang=EN-US>4.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>The sound File and Folder audio input systems now have an optional time
|
||||
zone setting. Note that PAMGuard analysis should still all be taking place in
|
||||
UTC and that this option is intended to allow the conversion of file times
|
||||
which were not recorded as UTC into UTC and not the other way around. Use the
|
||||
option with caution !</p>
|
||||
</span>The sound File and Folder audio input systems now have an optional time zone
|
||||
setting. Note that PAMGuard analysis should still all be taking place in UTC
|
||||
and that this option is intended to allow the conversion of file times which
|
||||
were not recorded as UTC into UTC and not the other way around. Use the option
|
||||
with caution !</p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
|
||||
lang=EN-US>5.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>The Open Office Database system has been removed from the list of available
|
||||
options since it is not reliable. If you require a free database solution we
|
||||
recommend you use the MySql Community Server <a
|
||||
</span>The Open Office Database system has been removed from the list of
|
||||
available options since it is not reliable. If you require a free database
|
||||
solution we recommend you use the MySql Community Server <a
|
||||
href="http://dev.mysql.com/downloads/mysql/">http://dev.mysql.com/downloads/mysql/</a></p>
|
||||
|
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<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
|
||||
@ -2987,9 +2988,8 @@ total loss of the PAMGuard configuration in viewer mode and has been rectified.
|
||||
7.0pt;font-family:"Times New Roman",serif'> </span>Bug
|
||||
218. SAIL Acquisition card would hang the system. This has also been fixed. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'>7. Bug
|
||||
219. Problems displaying Offline Click Events in the Viewer map have been
|
||||
fixed. </p>
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'>7. Bug 219.
|
||||
Problems displaying Offline Click Events in the Viewer map have been fixed. </p>
|
||||
|
||||
<p class=MsoNormal> </p>
|
||||
|
||||
@ -3071,8 +3071,8 @@ Visual Methods</p>
|
||||
<p class=MsoNormal>'<i>Multi Threading</i>' menu item moved from 'Detection'
|
||||
(now 'Settings') to 'File'</p>
|
||||
|
||||
<p class=MsoNormal>'<i>Start</i>' and '<i>Stop</i>' menu items removed. PAMGuard
|
||||
should be started and stopped using the red and black buttons.</p>
|
||||
<p class=MsoNormal>'<i>Start</i>' and '<i>Stop</i>' menu items removed.
|
||||
PAMGuard should be started and stopped using the red and black buttons.</p>
|
||||
|
||||
<p class=MsoNormal><b>New Modules</b></p>
|
||||
|
||||
@ -3087,9 +3087,9 @@ sonobuoys. See online help for details. </p>
|
||||
<p class=MsoNormal>This module, developed by Jamie Macaulay of St Andrews
|
||||
University estimates the 3D localisation of clicks using a variety of
|
||||
algorithms. It's primarily been developed to track harbour porpoise in three
|
||||
dimensions over scales of 10's of metres. While currently only working with
|
||||
output from the click detector, we hope eventually to extend its use to
|
||||
whistles as well. </p>
|
||||
dimensions over scales of 10's of metres. While currently only working with output
|
||||
from the click detector, we hope eventually to extend its use to whistles as
|
||||
well. </p>
|
||||
|
||||
<p class=MsoNormal><i>Accelerometer Readout</i> (Sensors group)</p>
|
||||
|
||||
@ -3159,25 +3159,24 @@ different. Details are available in the online help. </p>
|
||||
<p class=MsoNormal><i>FLAC File Support</i></p>
|
||||
|
||||
<p class=MsoNormal>Can now read raw audio data direct from FLAC files. <a
|
||||
href="http://en.wikipedia.org/wiki/FLAC">FLAC</a> is a lossless compression
|
||||
algorithm for audio data. Files, or folders of files are accessed in the same
|
||||
way as WAV and AIFF files in the Sound Acquisition module. In a future release
|
||||
we also hope to provide support for writing FLAC files from the sound recorder
|
||||
module. </p>
|
||||
href="http://en.wikipedia.org/wiki/FLAC">FLAC</a> is a lossless compression algorithm
|
||||
for audio data. Files, or folders of files are accessed in the same way as WAV
|
||||
and AIFF files in the Sound Acquisition module. In a future release we also
|
||||
hope to provide support for writing FLAC files from the sound recorder module. </p>
|
||||
|
||||
<p class=MsoNormal><i>Sound Recorder Module</i></p>
|
||||
|
||||
<p class=MsoNormal>Now supports writing 8 and 24 bit as well as 16 bit files.
|
||||
Also writes data to dated sub folders, starting a new folder each day (UTC). Also
|
||||
provides additional information on disk space on the main display panel.
|
||||
Also writes data to dated sub folders, starting a new folder each day (UTC).
|
||||
Also provides additional information on disk space on the main display panel.
|
||||
Millisecond time is also now included in the output file names. </p>
|
||||
|
||||
<p class=MsoNormal><i>Datagram Options</i></p>
|
||||
|
||||
<p class=MsoNormal>Datagram options in Viewer have been improved so that the
|
||||
user has to verify the time binning for datagrams the first time the viewer is
|
||||
run and can also change the time bins from the File menu (See the
|
||||
File/BinaryStore/Datagram options menu. </p>
|
||||
run and can also change the time bins from the File menu (See the File/BinaryStore/Datagram
|
||||
options menu. </p>
|
||||
|
||||
<p class=MsoNormal><i>Viewer Configuration</i></p>
|
||||
|
||||
@ -3229,8 +3228,8 @@ whistle.</p>
|
||||
longer possible to change configurations once PAMGuard has been launched
|
||||
and pressing 'Cancel' on the select dialog causes PAMGuard to exit. </li>
|
||||
<li class=MsoNormal style='margin-bottom:0cm'>Airgun display. If this was
|
||||
included in the PAMGuard model before the GPS module it would hang
|
||||
PAMGuard. This has been rectified. </li>
|
||||
included in the PAMGuard model before the GPS module it would hang PAMGuard.
|
||||
This has been rectified. </li>
|
||||
<li class=MsoNormal style='margin-bottom:0cm'>Fixed occasional exceptions in
|
||||
the sound output modules when playing back from files. </li>
|
||||
<li class=MsoNormal style='margin-bottom:0cm'>Fixed exceptions in spectrogram
|
||||
@ -3411,10 +3410,10 @@ elements has been fixed. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Database Speed: A substantial rewriting of some of the indexing methods
|
||||
in the database module has led to a significant increase in the speed at which
|
||||
data are written to the database (orders of magnitude for large databases). This
|
||||
is having a significant impact on the overall reliability of the software.
|
||||
</span>Database Speed: A substantial rewriting of some of the indexing methods in
|
||||
the database module has led to a significant increase in the speed at which
|
||||
data are written to the database (orders of magnitude for large databases).
|
||||
This is having a significant impact on the overall reliability of the software.
|
||||
Other changes have increased the speed (again by orders of magnitude) at which
|
||||
data are read back into PAMGuard when using the viewer. </p>
|
||||
|
||||
@ -3558,9 +3557,9 @@ to 0dN</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>The Binary store now saves a complete data map between runs of the PAMGUARD
|
||||
viewer. This leads to significant improvements in the time the viewer takes to
|
||||
load large data sets.</p>
|
||||
</span>The Binary store now saves a complete data map between runs of the
|
||||
PAMGUARD viewer. This leads to significant improvements in the time the viewer
|
||||
takes to load large data sets.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -3634,10 +3633,10 @@ source, even if that data source is loaded after the FFT module is created.</p>
|
||||
|
||||
<p class=MsoNormal>1. Binary storage module. </p>
|
||||
|
||||
<p class=MsoNormal>Performs a parallel role to the PAMGAURD database but uses
|
||||
binary files in a proprietary format which is considerably more efficient for
|
||||
data of unknown length such as whistle contours or small clips of click
|
||||
waveform. This feature is currently implemented in the following modules:</p>
|
||||
<p class=MsoNormal>Performs a parallel role to the PAMGAURD database but uses binary
|
||||
files in a proprietary format which is considerably more efficient for data of
|
||||
unknown length such as whistle contours or small clips of click waveform. This
|
||||
feature is currently implemented in the following modules:</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -3653,8 +3652,8 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
|
||||
<p class=MsoNormal>2. Improved offline viewer functionality. </p>
|
||||
|
||||
<p class=MsoNormal>The offline viewer is much improved with better data
|
||||
scrolling and the ability to view data either stored in the database or the binary
|
||||
<p class=MsoNormal>The offline viewer is much improved with better data scrolling
|
||||
and the ability to view data either stored in the database or the binary
|
||||
storage system. Work has stated on functions which read and use data stored in
|
||||
audio files. This is currently limited to re-calculating and displaying
|
||||
displaying spectrogram data during viewer mode operation. </p>
|
||||
@ -3679,8 +3678,8 @@ frequency division (i.e. previous versions would convert well from 96kHz to
|
||||
<p class=MsoNormal>1. Placement of axes on some displays (array manager and
|
||||
depth side panel). Problem in 1.9.01 Beta now fixed. </p>
|
||||
|
||||
<p class=MsoNormal>2. Fixed problems of NMEA read out not restarting after a serial
|
||||
drop out. NMEA now restarts correctly. </p>
|
||||
<p class=MsoNormal>2. Fixed problems of NMEA read out not restarting after a
|
||||
serial drop out. NMEA now restarts correctly. </p>
|
||||
|
||||
<p class=MsoNormal>3. Fixed a memory leak which caused occasional crashes,
|
||||
particularly when large numbers of files were processed offline. </p>
|
||||
@ -3754,22 +3753,23 @@ re-label those channels 0,1,2,3. </p>
|
||||
numbering scheme. For instance, if you had a configuration which worked in real
|
||||
time using channels 7 and 8 of a sound card, you could not use that same
|
||||
configuration to analyse wav files, which would always read their data as
|
||||
channels 0 and 1. Similarly if you switched sound cards, you may have to
|
||||
reconfigure every detector and several of the displays to handle the changes in
|
||||
channel numbering. </p>
|
||||
channels 0 and 1. Similarly if you switched sound cards, you may have to reconfigure
|
||||
every detector and several of the displays to handle the changes in channel
|
||||
numbering. </p>
|
||||
|
||||
<p class=MsoNormal>I have spent a considerable amount of time trying to work
|
||||
out a better system for handling channel numbering in PAMGUARD and have decided
|
||||
that the only practical thing to do is to force all software channel numbering
|
||||
back to a zero indexed system. i.e. even if you read out hardware channels
|
||||
3,4,5 and 6, within PAMGUARD, everywhere apart from the Sound acquisition
|
||||
dialog, you will see them listed as channels 0,1,2 and 3. The consequences
|
||||
of doing this are mainly very good. Most users will not notice any changes. For
|
||||
those who need for some reason to read channel numbers not starting at zero
|
||||
things will be more stable. However, when you go to a new version with this new
|
||||
feature, it will be necessary to reconfigure all the modules in any existing
|
||||
configurations. To do this, open the configuration dialog for each module in
|
||||
turn and select the correct, zero indexed, channel number. </p>
|
||||
dialog, you will see them listed as channels 0,1,2 and 3. The
|
||||
consequences of doing this are mainly very good. Most users will not notice any
|
||||
changes. For those who need for some reason to read channel numbers not
|
||||
starting at zero things will be more stable. However, when you go to a new
|
||||
version with this new feature, it will be necessary to reconfigure all the
|
||||
modules in any existing configurations. To do this, open the configuration
|
||||
dialog for each module in turn and select the correct, zero indexed, channel
|
||||
number. </p>
|
||||
|
||||
<p class=MsoNormal><b>Other Changes / new features</b></p>
|
||||
|
||||
@ -3820,9 +3820,9 @@ colour from the Display menu. </p>
|
||||
|
||||
<p class=MsoNormal>Database</p>
|
||||
|
||||
<p class=MsoNormal>Default name for the Database module has changed from "ODBC
|
||||
Database" to just "Database". This will not affect existing
|
||||
configurations. </p>
|
||||
<p class=MsoNormal>Default name for the Database module has changed from
|
||||
"ODBC Database" to just "Database". This will not affect
|
||||
existing configurations. </p>
|
||||
|
||||
<p class=MsoNormal>Sound acquisition</p>
|
||||
|
||||
@ -3863,13 +3863,13 @@ port is closed. Might prevent a few problems when using a GPS. </p>
|
||||
|
||||
<p class=MsoNormal><b>Bug Fixes</b></p>
|
||||
|
||||
<p class=MsoNormal>Crashes caused in real time or Mixed Mode if the number of software
|
||||
channels exceeds the number of hydrophones configured in the array manager. It
|
||||
is of course illogical to have software channels which are not assigned to a
|
||||
hydrophone, so rather than entirely prevent PAMGUARD from crashing I have
|
||||
inserted additional checks into the hydrophone array dialog which will prevent
|
||||
the user from closing that dialog unless all software channels are assigned to
|
||||
a hydrophone. </p>
|
||||
<p class=MsoNormal>Crashes caused in real time or Mixed Mode if the number of
|
||||
software channels exceeds the number of hydrophones configured in the array
|
||||
manager. It is of course illogical to have software channels which are not
|
||||
assigned to a hydrophone, so rather than entirely prevent PAMGUARD from
|
||||
crashing I have inserted additional checks into the hydrophone array dialog
|
||||
which will prevent the user from closing that dialog unless all software
|
||||
channels are assigned to a hydrophone. </p>
|
||||
|
||||
<h2><span style='font-weight:normal'>Version 1.8.01 Beta February 2010</span></h2>
|
||||
|
||||
@ -3880,15 +3880,15 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
</span>Play back of high frequency wav files through National Instruments (NI)
|
||||
cards: When analysing wav files, sound can be output at high frequency
|
||||
(depending on the specification of the NI card). The primary motivation for
|
||||
this has been to develop a test bed for high frequency sound acquisition whereby
|
||||
we can play 500kHz recordings of harbour porpoise out of an NI card on one
|
||||
machine, into NI cards on a different machine which are testing high frequency
|
||||
versions of the click detector.</p>
|
||||
this has been to develop a test bed for high frequency sound acquisition
|
||||
whereby we can play 500kHz recordings of harbour porpoise out of an NI card on
|
||||
one machine, into NI cards on a different machine which are testing high
|
||||
frequency versions of the click detector.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Note that this does not (yet) permit simultaneous acquisition and
|
||||
playback through</p>
|
||||
</span>Note that this does not (yet) permit simultaneous acquisition and playback
|
||||
through</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -4083,10 +4083,10 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>New menu functionality by right clicking on any of the tabs of the main
|
||||
tab control will allow the user to copy the tab contents to the system
|
||||
clipboard from where it can be copied into other programs (e.g. Word,
|
||||
Powerpoint, etc.).Some modules, such as the map, have this implemented in other
|
||||
menus (right click) and also allow printing. </p>
|
||||
tab control will allow the user to copy the tab contents to the system clipboard
|
||||
from where it can be copied into other programs (e.g. Word, Powerpoint,
|
||||
etc.).Some modules, such as the map, have this implemented in other menus
|
||||
(right click) and also allow printing. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -4191,9 +4191,9 @@ now been fixed. </p>
|
||||
|
||||
<p class=MsoNormal><b>Sound Recorder</b></p>
|
||||
|
||||
<p class=MsoNormal>Level meters are shown for the correct channels (after channel
|
||||
numbering has been changed). Occasional crash due to synchronisation problems
|
||||
when multi-threading now fixed.</p>
|
||||
<p class=MsoNormal>Level meters are shown for the correct channels (after
|
||||
channel numbering has been changed). Occasional crash due to synchronisation
|
||||
problems when multi-threading now fixed.</p>
|
||||
|
||||
<p class=MsoNormal><b>Whistle Detector</b></p>
|
||||
|
||||
@ -4467,9 +4467,9 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Better drawing of held spectrogram when putting mark rectangles on a spectrogram
|
||||
display. All panels are now correctly frozen. The rectangle is drawn in red on
|
||||
the marked panel and in green on other panels. </p>
|
||||
</span>Better drawing of held spectrogram when putting mark rectangles on a
|
||||
spectrogram display. All panels are now correctly frozen. The rectangle is
|
||||
drawn in red on the marked panel and in green on other panels. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
|
||||
@ -4,7 +4,7 @@
|
||||
<groupId>org.pamguard</groupId>
|
||||
<artifactId>Pamguard</artifactId>
|
||||
<name>Pamguard Java12+</name>
|
||||
<version>2.02.05a</version>
|
||||
<version>2.02.06</version>
|
||||
<description>Pamguard for Java 12+, using Maven to control dependcies</description>
|
||||
<url>www.pamguard.org</url>
|
||||
<organization>
|
||||
|
||||
@ -210,14 +210,8 @@ public class AcquisitionControl extends PamControlledUnit implements PamSettings
|
||||
else {
|
||||
PamStatusBar statusBar = PamStatusBar.getStatusBar();
|
||||
|
||||
if (statusBar != null) {
|
||||
// statusBar.getToolBar().add(statusBarText = new JLabel());
|
||||
// fillStatusBarText();
|
||||
// statusBar.getToolBar().add(levelBar = new JProgressBar(-60, 0));
|
||||
// levelBar.setValue(-60);
|
||||
// levelBar.setOrientation(JProgressBar.HORIZONTAL);
|
||||
if (statusBar != null && statusBarComponent != null) {
|
||||
statusBar.add(statusBarComponent);
|
||||
// statusBar.getToolBar().addSeparator();
|
||||
setupStatusBar();
|
||||
}
|
||||
}
|
||||
@ -248,6 +242,7 @@ public class AcquisitionControl extends PamControlledUnit implements PamSettings
|
||||
|
||||
|
||||
private PamPanel systemPanel;
|
||||
|
||||
protected Component getStatusBarComponent() {
|
||||
PamPanel p = new PamPanel();
|
||||
p.add(statusBarText = new PamLabel());
|
||||
|
||||
33
src/generalDatabase/DatabaseFetchSpeed.java
Normal file
33
src/generalDatabase/DatabaseFetchSpeed.java
Normal file
@ -0,0 +1,33 @@
|
||||
package generalDatabase;
|
||||
|
||||
/**
|
||||
* Run some tests to try to work out why it's so much slower to load
|
||||
* data when the query is based on a non indexed column compared
|
||||
* to an index one, even though the actual query execution time
|
||||
* is a small fraction of the total time.
|
||||
* @author dg50
|
||||
*
|
||||
*/
|
||||
public class DatabaseFetchSpeed {
|
||||
|
||||
String dbName = "C:\\ProjectData\\meyGenMayData\\Database\\MeygenTritechDetectHDD_03_24.06.2022.sqlite3";
|
||||
long[] idRange = {9906111, 9906977};
|
||||
long[] uidRange = {8030630, 8031496};
|
||||
String[] utcRange = {"2022-05-24 09:27:34", "2022-05-24 09:27:52"};
|
||||
|
||||
public static void main(String[] args) {
|
||||
// TODO Auto-generated method stub
|
||||
|
||||
}
|
||||
|
||||
public DatabaseFetchSpeed() {
|
||||
//
|
||||
// qStr{1} = sprintf('SELECT Id FROM Gemini_Threshold_Detector_Targets WHERE Id BETWEEN %d and %d', ...
|
||||
// idRange(1), idRange(2));
|
||||
// qStr{2} = sprintf('SELECT Id FROM Gemini_Threshold_Detector_Targets WHERE UID BETWEEN %d and %d', ...
|
||||
// uidRange(1), uidRange(2));
|
||||
// qStr{3} = sprintf('SELECT Id FROM Gemini_Threshold_Detector_Targets WHERE UTC BETWEEN ''%s'' and ''%s''', ...
|
||||
// utcRange{1}, utcRange{2});
|
||||
|
||||
}
|
||||
}
|
||||
@ -24,7 +24,10 @@
|
||||
|
||||
package soundtrap;
|
||||
|
||||
import java.awt.Component;
|
||||
|
||||
import Acquisition.AcquisitionControl;
|
||||
import Acquisition.DaqSystem;
|
||||
|
||||
/**
|
||||
* @author SCANS
|
||||
@ -34,6 +37,7 @@ public class STAcquisitionControl extends AcquisitionControl {
|
||||
|
||||
public static final String STUNITTYPE = "SoundTrap Data Acquisition";
|
||||
private STAcquisitionProcess stAcquisitionProcess;
|
||||
private STDaqSystem stDaqSystem;
|
||||
|
||||
/**
|
||||
* @param name
|
||||
@ -79,6 +83,7 @@ public class STAcquisitionControl extends AcquisitionControl {
|
||||
// TDDataProviderRegisterFX.getInstance().registerDataInfo(new RawSoundProviderFX(this));
|
||||
|
||||
// add a second PAM process, for the click data
|
||||
registerDaqSystem(stDaqSystem = new STDaqSystem());
|
||||
addPamProcess(stAcquisitionProcess = new STAcquisitionProcess(this));
|
||||
|
||||
}
|
||||
@ -101,6 +106,30 @@ public class STAcquisitionControl extends AcquisitionControl {
|
||||
return stAcquisitionProcess;
|
||||
}
|
||||
|
||||
// @Override
|
||||
// protected Component getStatusBarComponent() {
|
||||
// // call it to create the fields, just incase, then return null;
|
||||
// super.getStatusBarComponent();
|
||||
// return null;
|
||||
// }
|
||||
|
||||
// @Override
|
||||
// protected void setupStatusBar() {
|
||||
//// if (systemPanel == null) return;
|
||||
//// systemPanel.removeAll();
|
||||
//// DaqSystem daqSys = findDaqSystem(null);
|
||||
//// if (daqSys == null) return;
|
||||
//// Component specialComponent = daqSys.getStatusBarComponent();
|
||||
//// if (specialComponent != null) {
|
||||
//// systemPanel.add(specialComponent);
|
||||
//// }
|
||||
// }
|
||||
|
||||
@Override
|
||||
public DaqSystem findDaqSystem(String systemType) {
|
||||
return stDaqSystem;
|
||||
}
|
||||
|
||||
|
||||
|
||||
}
|
||||
|
||||
@ -63,7 +63,7 @@ public class STClickControl extends ClickControl {
|
||||
super(name);
|
||||
|
||||
// create a private acquisition control that only this module can see
|
||||
rawSource = new AcquisitionControl("Private Sound Acq for Soundtrap Click Detector");
|
||||
rawSource = new STAcquisitionControl("Private Sound Acq for Soundtrap Click Detector");
|
||||
|
||||
sudFileDWVHandler = new SudFileDWVHandler(this);
|
||||
sudFileDWVHandler.subscribeSUD();
|
||||
|
||||
107
src/soundtrap/STDaqSystem.java
Normal file
107
src/soundtrap/STDaqSystem.java
Normal file
@ -0,0 +1,107 @@
|
||||
package soundtrap;
|
||||
|
||||
import javax.swing.JComponent;
|
||||
|
||||
import Acquisition.AcquisitionControl;
|
||||
import Acquisition.AcquisitionDialog;
|
||||
import Acquisition.DaqSystem;
|
||||
|
||||
public class STDaqSystem extends DaqSystem {
|
||||
|
||||
public STDaqSystem() {
|
||||
// TODO Auto-generated constructor stub
|
||||
}
|
||||
|
||||
@Override
|
||||
public String getSystemType() {
|
||||
return "SoundTrap clicks";
|
||||
}
|
||||
|
||||
@Override
|
||||
public String getSystemName() {
|
||||
return "SoundTrap clicks";
|
||||
}
|
||||
|
||||
@Override
|
||||
public JComponent getDaqSpecificDialogComponent(AcquisitionDialog acquisitionDialog) {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public void dialogSetParams() {
|
||||
// TODO Auto-generated method stub
|
||||
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean dialogGetParams() {
|
||||
// TODO Auto-generated method stub
|
||||
return false;
|
||||
}
|
||||
|
||||
@Override
|
||||
public int getMaxSampleRate() {
|
||||
return PARAMETER_UNKNOWN;
|
||||
}
|
||||
|
||||
@Override
|
||||
public int getMaxChannels() {
|
||||
return 1;
|
||||
}
|
||||
|
||||
@Override
|
||||
public double getPeak2PeakVoltage(int swChannel) {
|
||||
// TODO Auto-generated method stub
|
||||
return 2;
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean prepareSystem(AcquisitionControl daqControl) {
|
||||
// TODO Auto-generated method stub
|
||||
return true;
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean startSystem(AcquisitionControl daqControl) {
|
||||
// TODO Auto-generated method stub
|
||||
return true;
|
||||
}
|
||||
|
||||
@Override
|
||||
public void stopSystem(AcquisitionControl daqControl) {
|
||||
// TODO Auto-generated method stub
|
||||
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean isRealTime() {
|
||||
// TODO Auto-generated method stub
|
||||
return true;
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean canPlayBack(float sampleRate) {
|
||||
// TODO Auto-generated method stub
|
||||
return false;
|
||||
}
|
||||
|
||||
@Override
|
||||
public int getDataUnitSamples() {
|
||||
// TODO Auto-generated method stub
|
||||
return 100;
|
||||
}
|
||||
|
||||
@Override
|
||||
public void daqHasEnded() {
|
||||
// TODO Auto-generated method stub
|
||||
|
||||
}
|
||||
|
||||
@Override
|
||||
public String getDeviceName() {
|
||||
// TODO Auto-generated method stub
|
||||
return "Sound Trap detector";
|
||||
}
|
||||
|
||||
}
|
||||
@ -12,6 +12,7 @@ import PamController.PamControlledUnit;
|
||||
import PamController.PamControlledUnitSettings;
|
||||
import PamController.PamSettingManager;
|
||||
import PamController.PamSettings;
|
||||
import PamView.dialog.warn.WarnOnce;
|
||||
|
||||
public class STToolsControl extends PamControlledUnit implements PamSettings {
|
||||
|
||||
@ -21,9 +22,17 @@ public class STToolsControl extends PamControlledUnit implements PamSettings {
|
||||
public static final String dwvFileEnd = ".dwv";
|
||||
public static final String bclFileEnd = ".bcl";
|
||||
|
||||
private String warn = "<html>Versions 2.02.06 of PAMGuard and later can read SoundTrap SUD files directly, removing the need " +
|
||||
" to decompress them and then use this module to import the SoundTrap click detector data into PAMGuard.<p><br>" +
|
||||
"Instead you should process the SUD files in 'normal mode' and include a SoundTrap Click Detector in "
|
||||
+ "your configuration. Click data will then be automatically unpacked into the correct binary files"
|
||||
+ " as you process the SUD file audio data.<p><br>"
|
||||
+ "You can remove this module which is now obsolete. See the online help for details.";
|
||||
|
||||
public STToolsControl(String unitName) {
|
||||
super("Sound Trap Tools", unitName);
|
||||
PamSettingManager.getInstance().registerSettings(this);
|
||||
WarnOnce.showWarning("Importing SoundTrap data", warn, WarnOnce.WARNING_MESSAGE);
|
||||
}
|
||||
|
||||
/* (non-Javadoc)
|
||||
|
||||
@ -77,6 +77,8 @@ public class SudFileDWVHandler implements SUDNotificationHandler {
|
||||
stClickControl.findRawDataBlock().setChannelMap(1);
|
||||
stClickControl.findRawDataBlock().setSampleRate((float) sampleRate, true);
|
||||
stClickControl.getSTAcquisition().acquisitionParameters.sampleRate = (float) sampleRate;
|
||||
stClickControl.getSTAcquisition().getAcquisitionProcess().setSampleRate((float) sampleRate, true);
|
||||
// stClickControl.getSTAcquisition().getS().setSampleRate((float) sampleRate, true);
|
||||
// System.out.printf("Open input stream fs = %3.1f\n", sampleRate);
|
||||
|
||||
}
|
||||
|
||||
Loading…
Reference in New Issue
Block a user