* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
* Daylight saving problem
Fix daylight saving problem in generation of timestamps in SQLTypes. See long explanation in SQLTypes.java. Only occurred in the hour after daylight saving starts.
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Global arguments to set params in acquisition and database.
* Fix bug in CTD dataselector panel.
* Extra options for creating data selectors
Extra options so dataselectors can be kept simple and not include all
possible options for super detections as well as their own - more use
when selecting data for a superdetection !
Extra options so dataselectors can be kept simple and not include all
possible options for super detections as well as their own - more use
when selecting data for a superdetection !
Douglas Gillespie