Merge branch 'main' of https://github.com/PAMGuard/PAMGuard

src/PamView/paneloverlay/overlaymark/MarkOverlayDraw.java

@@ -76,6 +76,9 @@ public class MarkOverlayDraw extends PanelOverlayDraw {
 			hoverData.setTransformShape(t);
 			generalProjector.addHoverData(t, pamDataUnit);
 		}
+		if (drawnShape == null) {
+			return null;
+		}
 		return drawnShape.getBounds();
 	}
 
@@ -143,52 +146,60 @@ public class MarkOverlayDraw extends PanelOverlayDraw {
 		 * To allow for things like the rotated map which no longer show rectangles as
 		 * rectangles, we now need to draw rectangles are irregular polygons too !
 		 */
-		int[] x = new int[4];
-		int[] y = new int[4];
-		PamCoordinate m0 = mark.getCoordinate(0);
-		PamCoordinate m1 = mark.getCoordinate(1);
-		Point p;
-		p = generalProjector.getCoord3d(m0.getCoordinate(0), m0.getCoordinate(1), 0).getXYPoint();
-		x[0] = p.x;
-		y[0] = p.y;
-		p = generalProjector.getCoord3d(m0.getCoordinate(0), m1.getCoordinate(1), 0).getXYPoint();
-		x[1] = p.x;
-		y[1] = p.y;
-		p = generalProjector.getCoord3d(m1.getCoordinate(0), m1.getCoordinate(1), 0).getXYPoint();
-		x[2] = p.x;
-		y[2] = p.y;
-		p = generalProjector.getCoord3d(m1.getCoordinate(0), m0.getCoordinate(1), 0).getXYPoint();
-		x[3] = p.x;
-		y[3] = p.y;
-		Polygon pgon = new Polygon(x, y, 4);
-		Color fillCol = getFillCol();
-		if (fillCol != null) {
-			g2d.setColor(getFillCol());
-			g2d.fillPolygon(pgon);
+		try {
+			int[] x = new int[4];
+			int[] y = new int[4];
+			PamCoordinate m0 = mark.getCoordinate(0);
+			PamCoordinate m1 = mark.getCoordinate(1);
+			if (m0 == null || m1 == null) {
+				return null;
+			}
+			Point p;
+			p = generalProjector.getCoord3d(m0.getCoordinate(0), m0.getCoordinate(1), 0).getXYPoint();
+			x[0] = p.x;
+			y[0] = p.y;
+			p = generalProjector.getCoord3d(m0.getCoordinate(0), m1.getCoordinate(1), 0).getXYPoint();
+			x[1] = p.x;
+			y[1] = p.y;
+			p = generalProjector.getCoord3d(m1.getCoordinate(0), m1.getCoordinate(1), 0).getXYPoint();
+			x[2] = p.x;
+			y[2] = p.y;
+			p = generalProjector.getCoord3d(m1.getCoordinate(0), m0.getCoordinate(1), 0).getXYPoint();
+			x[3] = p.x;
+			y[3] = p.y;
+			Polygon pgon = new Polygon(x, y, 4);
+			Color fillCol = getFillCol();
+			if (fillCol != null) {
+				g2d.setColor(getFillCol());
+				g2d.fillPolygon(pgon);
+			}
+			return pgon;
 		}
-		return pgon;
-		
-//		
-//		Point p0 = generalProjector.getCoord3d(m0).getXYPoint();
-//		Point p1 = generalProjector.getCoord3d(m1).getXYPoint();
-//		g2d.setColor(getLineCol());
-//		g2d.setStroke(getLineStroke());
-//		g2d.drawLine(p0.x, p0.y, p1.x, p0.y);
-//		g2d.drawLine(p1.x, p0.y, p1.x, p1.y);
-//		g2d.drawLine(p1.x, p1.y, p0.x, p1.y);
-//		g2d.drawLine(p0.x, p1.y, p0.x, p0.y);
-//		int x = Math.min(p0.x, p1.x);
-//		int y = Math.min(p0.y, p1.y);
-//		int w = Math.abs(p0.x - p1.x);
-//		int h = Math.abs(p0.y - p1.y);
-//
-//		Color fillCol = getFillCol();
-//		if (fillCol != null) {
-//			g2d.setColor(getFillCol());
-//			g2d.fillRect(x, y, w, h);
-//		}
-//		Rectangle r = new Rectangle(x, y, w, h);
-//		return r;
+		catch (NullPointerException e) {
+			return null;
+		}
+
+		//		
+		//		Point p0 = generalProjector.getCoord3d(m0).getXYPoint();
+		//		Point p1 = generalProjector.getCoord3d(m1).getXYPoint();
+		//		g2d.setColor(getLineCol());
+		//		g2d.setStroke(getLineStroke());
+		//		g2d.drawLine(p0.x, p0.y, p1.x, p0.y);
+		//		g2d.drawLine(p1.x, p0.y, p1.x, p1.y);
+		//		g2d.drawLine(p1.x, p1.y, p0.x, p1.y);
+		//		g2d.drawLine(p0.x, p1.y, p0.x, p0.y);
+		//		int x = Math.min(p0.x, p1.x);
+		//		int y = Math.min(p0.y, p1.y);
+		//		int w = Math.abs(p0.x - p1.x);
+		//		int h = Math.abs(p0.y - p1.y);
+		//
+		//		Color fillCol = getFillCol();
+		//		if (fillCol != null) {
+		//			g2d.setColor(getFillCol());
+		//			g2d.fillRect(x, y, w, h);
+		//		}
+		//		Rectangle r = new Rectangle(x, y, w, h);
+		//		return r;
 	}
 
 	@Override
@@ -223,7 +234,7 @@ public class MarkOverlayDraw extends PanelOverlayDraw {
 	public Stroke getLineStroke() {
 		return plainStroke ;
 	}
-	
+
 	public Stroke getFinalLineStroke() {
 		return dashed;
 	}

src/PamView/paneloverlay/overlaymark/OverlayMark.java

@@ -232,6 +232,9 @@ public class OverlayMark {
 		}
 		PamCoordinate c0 = projector.getCoord3d(coordinates.get(0));
 		PamCoordinate c1 = projector.getCoord3d(coordinates.get(1));
+		if (c0 == null || c1 == null) {
+			return null;
+		}
 		double x = Math.min(c0.getCoordinate(0), c1.getCoordinate(0));
 		double y = Math.min(c0.getCoordinate(1), c1.getCoordinate(1));
 		double w = Math.abs(c0.getCoordinate(0) - c1.getCoordinate(0));

src/clickTrainDetector/layout/dataselector/CTDataSelectPanel.java

@@ -289,11 +289,11 @@ public class CTDataSelectPanel implements PamDialogPanel {
 			
 //			System.out.println("No. count: " + count);
 			currentParams.classifier = new int[count];  
+			ArrayList<CTClassifier> classifiers = ctDataSelector.getClickControl().getClassifierManager().getCurrentClassifiers();
 			int used = 0;
-			ArrayList<CTClassifier> currentClassifiers = ctDataSelector.getClickControl().getClassifierManager().getCurrentClassifiers();
 			for (int i=0; i<classifierCheckBoxes.length; i++) {
 				if (classifierCheckBoxes[i].isSelected()) {
-					currentParams.classifier[used++] = currentClassifiers.get(i).getSpeciesID(); 				
+					currentParams.classifier[used++] = classifiers.get(i).getSpeciesID(); 	
 				}
 			}
 		

src/effortmonitor/EffortControl.java

@@ -5,6 +5,7 @@ import java.awt.event.ActionEvent;
 import java.awt.event.ActionListener;
 import java.io.Serializable;
 import java.util.ArrayList;
+import java.util.HashMap;
 import java.util.Vector;
 
 import javax.swing.JCheckBoxMenuItem;
@@ -18,14 +19,18 @@ import PamController.PamController;
 import PamController.PamSettingManager;
 import PamController.PamSettings;
 import PamUtils.PamCalendar;
+import PamView.PamSidePanel;
 import PamguardMVC.PamDataBlock;
 import PamguardMVC.PamProcess;
 import PamguardMVC.debug.Debug;
 import effortmonitor.swing.EffortDataMapGraph;
 import effortmonitor.swing.EffortDialog;
 import effortmonitor.swing.EffortDisplayProvider;
+import effortmonitor.swing.EffortSidePanel;
 import pamScrollSystem.AbstractPamScroller;
 import pamScrollSystem.AbstractScrollManager;
+import pamScrollSystem.PamScroller;
+import pamScrollSystem.PamScrollerData;
 import userDisplay.UserDisplayControl;
 
 public class EffortControl extends PamControlledUnit implements PamSettings{
@@ -42,6 +47,10 @@ public class EffortControl extends PamControlledUnit implements PamSettings{
 	
 	private EffortDataMapGraph dataMapGraph;
 	
+	private HashMap<AbstractPamScroller, PamScrollerData> lastOuterStarts = new HashMap<>();
+	
+	private EffortSidePanel effortSidePanel;
+	
 	public EffortControl(String unitName) {
 		super("unitType", unitName);
 		EffortProcess effortProc = new EffortProcess();
@@ -50,12 +59,22 @@ public class EffortControl extends PamControlledUnit implements PamSettings{
 		effortProc.addOutputDataBlock(effortDataBlock);
 		effortDataBlock.SetLogging(new EffortLogging(this, effortDataBlock));
 		dataMapGraph = new EffortDataMapGraph(this);
+		
+//		PamScroller
 
 		UserDisplayControl.addUserDisplayProvider(new EffortDisplayProvider(this));
 		
 		PamSettingManager.getInstance().registerSettings(this);
 	}
 
+	@Override
+	public PamSidePanel getSidePanel() {
+		if (effortSidePanel == null) {
+			effortSidePanel = new EffortSidePanel(this);
+		}
+		return effortSidePanel;
+	}
+
 	@Override
 	public void notifyModelChanged(int changeType) {
 		super.notifyModelChanged(changeType);
@@ -65,6 +84,10 @@ public class EffortControl extends PamControlledUnit implements PamSettings{
 			break;
 		case PamController.NEW_SCROLL_TIME:
 			updateScrollerInfo();
+			break;
+		case PamController.DATA_LOAD_COMPLETE:
+			updateScrollerInfo();
+			break;
 		}
 	}
 
@@ -102,7 +125,25 @@ public class EffortControl extends PamControlledUnit implements PamSettings{
 			 */
 			return;
 		}
+		
+		boolean newOuter = isNewOuter(scroller);
+		if (effortParams.outserScrollOnly) {
+			if (newOuter) {
+				logOuterScroll(scroller);
+			}
+		}
+		else {
+			logInnerScroll(scroller);
+		}
+	}
+	
+	private void logOuterScroll(AbstractPamScroller scroller) {
+		EffortDataUnit effortData = new EffortDataUnit(scroller, effortParams.getObserver(), effortParams.getObjective());
+		effortData.setOuterLimits();
+		effortDataBlock.addPamData(effortData);
+	}
 
+	private void logInnerScroll(AbstractPamScroller scroller) {
 //		checkObserverName();
 		
 		EffortDataUnit effortData = effortDataBlock.findActiveUnit(scroller);
@@ -129,6 +170,38 @@ public class EffortControl extends PamControlledUnit implements PamSettings{
 		}
 	}
 
+	/**
+	 * Has the outer scroll moved. 
+	 * @param scroller
+	 * @return true if the outer has moved. 
+	 */
+	private boolean isNewOuter(AbstractPamScroller scroller) {
+		PamScrollerData lastData = lastOuterStarts.get(scroller);
+		PamScrollerData nowVal = scroller.getScrollerData();
+		if (nowVal == null) {
+			return false; // shouldn't happen !
+		}
+		boolean changed = isChanged(lastData, nowVal);
+		if (changed) {
+			lastOuterStarts.put(scroller, nowVal.clone());
+		}
+		return changed;
+	}
+
+	private boolean isChanged(PamScrollerData lastData, PamScrollerData nowVal) {
+		if (lastData == null || nowVal == null) {
+			return true;
+		}
+		if (lastData.getMinimumMillis() != nowVal.getMinimumMillis()) {
+			return true;
+		}
+		if (lastData.getMaximumMillis() != nowVal.getMaximumMillis()) {
+			return true;
+		}
+		
+		return false;
+	}
+
 	/**
 	 * Quick and dirty to get observer name.
 	 */
@@ -203,9 +276,11 @@ public class EffortControl extends PamControlledUnit implements PamSettings{
 				existingUnit.setObserver(newParams.getObserver());
 				existingUnit.setObjective(newParams.getObjective());
 			}
-			return true;
 		}
-		return false;
+		if (effortSidePanel != null) {
+			effortSidePanel.updateSettings();
+		}
+		return newParams!=null;
 	}
 
 	public void goToTime(AbstractPamScroller scroller, long timeInMilliseconds) {
@@ -235,6 +310,9 @@ public class EffortControl extends PamControlledUnit implements PamSettings{
 	@Override
 	public boolean restoreSettings(PamControlledUnitSettings pamControlledUnitSettings) {
 		effortParams = ((EffortParams) pamControlledUnitSettings.getSettings());
+		if (effortSidePanel != null) {
+			effortSidePanel.updateSettings();
+		}
 		return true;
 	}
 

src/effortmonitor/EffortDataUnit.java

@@ -42,6 +42,7 @@ public class EffortDataUnit extends PamDataUnit {
 		getBasicData().setEndTime(scroller.getValueMillis()+scroller.getVisibleAmount());
 	}
 	
+	
 	/**
 	 * Constructor to use when reloading from database. 
 	 * @param databaseIndex
@@ -210,4 +211,13 @@ public class EffortDataUnit extends PamDataUnit {
 		return runMode;
 	}
 
+
+	/**
+	 * Set the limits as the outer limits of the scroller. 
+	 */
+	public void setOuterLimits() {
+		setTimeMilliseconds(scroller.getMinimumMillis());
+		getBasicData().setEndTime(scroller.getMaximumMillis());
+	}
+
 }

src/effortmonitor/EffortParams.java

@@ -16,6 +16,11 @@ public class EffortParams implements Cloneable, Serializable, ManagedParameters
 	
 	public transient boolean isSet;
 	
+	/**
+	 * Only log outer scroll events when paging forwards, not every little movement. 
+	 */
+	public boolean outserScrollOnly = false;
+	
 	private static final int MAX_OBSERVERS = 10;
 	private static final int MAX_OBJECTIVES = 10;
 	

src/effortmonitor/swing/EffortDialog.java

@@ -8,9 +8,11 @@ import java.awt.event.ActionEvent;
 import java.awt.event.ActionListener;
 import java.util.LinkedList;
 
+import javax.swing.ButtonGroup;
 import javax.swing.JComboBox;
 import javax.swing.JLabel;
 import javax.swing.JPanel;
+import javax.swing.JRadioButton;
 import javax.swing.border.TitledBorder;
 
 import PamView.DBTextArea;
@@ -29,6 +31,7 @@ public class EffortDialog extends PamDialog {
 	private JComboBox<String> observer;
 	private JComboBox<String> oldObjectives;
 	private DBTextArea objective;
+	private JRadioButton outerOnly, allActions;
 
 	private EffortDialog(Window parentFrame, EffortControl effortControl) {
 		super(parentFrame, effortControl.getUnitName(), false);
@@ -40,6 +43,18 @@ public class EffortDialog extends PamDialog {
 		mainPanel.add(new JLabel("Observer name or initials"), c);
 		c.gridx++;
 		mainPanel.add(observer = new JComboBox<String>(), c);
+		outerOnly = new JRadioButton("Log uter scroll only");
+		allActions = new JRadioButton("Log all scroll actions");
+		ButtonGroup bg = new ButtonGroup();
+		bg.add(allActions);
+		bg.add(outerOnly);
+		c.gridx = 0;
+		c.gridy++;
+		c.gridwidth = 1;
+		mainPanel.add(allActions, c);
+		c.gridx+=c.gridwidth;
+		mainPanel.add(outerOnly, c);
+		
 		c.gridx = 0;
 		c.gridy++;
 		c.gridwidth = 2;
@@ -80,6 +95,8 @@ public class EffortDialog extends PamDialog {
 		for (String obs : oldObs) {
 			observer.addItem(obs);
 		}
+		allActions.setSelected(effortParams.outserScrollOnly == false);
+		outerOnly.setSelected(effortParams.outserScrollOnly);
 		oldObjectives.removeAllItems();
 		oldObjectives.addItem("");
 		for (String obj : effortParams.getRecentObjectives()) {
@@ -100,6 +117,7 @@ public class EffortDialog extends PamDialog {
 		if (obs == null || obs.length() == 0) {
 			return showWarning("You must give your name or initials to contine");
 		}
+		effortParams.outserScrollOnly = outerOnly.isSelected();
 		effortParams.setObserver(obs);
 		effortParams.setObjective(objective.getText());
 		return true;

src/effortmonitor/swing/EffortSidePanel.java

@@ -0,0 +1,99 @@
+package effortmonitor.swing;
+
+import java.awt.GridBagConstraints;
+import java.awt.GridBagLayout;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+
+import javax.swing.JComponent;
+import javax.swing.JLabel;
+import javax.swing.JTextField;
+import javax.swing.border.TitledBorder;
+
+import PamView.PamSidePanel;
+import PamView.component.PamSettingsIconButton;
+import PamView.dialog.PamCheckBox;
+import PamView.dialog.PamGridBagContraints;
+import PamView.dialog.PamLabel;
+import PamView.dialog.PamTextField;
+import PamView.panel.PamPanel;
+import effortmonitor.EffortControl;
+import effortmonitor.EffortObserver;
+import effortmonitor.EffortParams;
+
+public class EffortSidePanel implements PamSidePanel, EffortObserver {
+
+	private PamPanel mainPanel;
+	
+	private PamTextField person;
+	
+	private PamCheckBox logging;
+	
+	private PamSettingsIconButton settingsButton;
+
+	private EffortControl effortControl;
+	
+	public EffortSidePanel(EffortControl effortControl) {
+		this.effortControl = effortControl;
+		
+		mainPanel = new PamPanel(new GridBagLayout());
+		mainPanel.setBorder(new TitledBorder(effortControl.getUnitName()));
+		GridBagConstraints c = new PamGridBagContraints();
+		mainPanel.add(new PamLabel("Person ", JLabel.RIGHT), c);
+		c.gridx++;
+		mainPanel.add(person = new PamTextField(6), c);
+		person.setEditable(false);
+		c.gridx = 0;
+		c.gridy++;
+		c.gridwidth = 1;
+		mainPanel.add(logging = new PamCheckBox("Log effort"), c);
+		c.gridx += c.gridwidth;
+		mainPanel.add(settingsButton = new PamSettingsIconButton(), c);
+		settingsButton.addActionListener(new ActionListener() {
+			@Override
+			public void actionPerformed(ActionEvent e) {
+				settings();
+			}
+		});
+		effortControl.addObserver(this);
+		logging.addActionListener(new ActionListener() {
+			
+			@Override
+			public void actionPerformed(ActionEvent e) {
+				loggingButton();
+			}
+		});
+		
+		updateSettings();
+	}
+	
+	protected void loggingButton() {
+		effortControl.setOnEffort(logging.isSelected());
+	}
+
+	protected void settings() {
+		effortControl.showSettingsDialog(effortControl.getGuiFrame(), null);
+	}
+	
+	public void updateSettings() {
+		EffortParams params = effortControl.getEffortParams();
+		person.setText(params.getObserver());
+		logging.setSelected(params.isSet);
+	}
+
+	@Override
+	public JComponent getPanel() {
+		return mainPanel;
+	}
+
+	@Override
+	public void rename(String newName) {
+		mainPanel.setBorder(new TitledBorder(newName));
+	}
+
+	@Override
+	public void statusChange() {
+		updateSettings();
+	}
+
+}

src/pamScrollSystem/PamScrollerData.java

@@ -58,7 +58,7 @@ public class PamScrollerData implements Serializable, Cloneable {
 	
 
 	@Override
-	protected PamScrollerData clone() {
+	public PamScrollerData clone() {
 		try {
 			return (PamScrollerData) super.clone();
 		} catch (CloneNotSupportedException e) {