Implement zip models which allow packaging of deep learning models with metadata\
Fix TDdsiplayFX spinner bug
Bug fixes for deep learning module after testing
Implement a validator to warn if users have selected all or no classes for binary classifcation.
Sorted CSS out so that is accepts multiple stylesheets
Sorted plotting of waveforms from FPOD on dataPlotFX
Sorting out datamap and viewer model for FX GUI
commit 840e6c89a1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Nov 16 20:36:14 2023 +0000
R2.02.09d
Fix matched template classifier import
fix azigram help file image display
commit acc806d375
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 15 13:08:02 2023 +0000
Updated X3 library to 2.2.6
commit a4f484c76c
Merge: 8e60ad2ed7c4c278
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 15 09:44:09 2023 +0000
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main
commit 8e60ad2eff
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 15 09:43:39 2023 +0000
update to array diagnostics and sensor control
commit d7c4c278d8
Author: m2oswald <45486636+m2oswald@users.noreply.github.com>
Date: Wed Nov 15 09:17:49 2023 +0000
Added code to Rocca for training/testing classifier (#114)
* allow Rocca to run without classifiers
Fixed bug that threw an error if no classifier files were specified in Rocca Params dialog
* add rocca switch to enable dev mode
currently only shows/hides extra buttons in the Params dialog, but will
extend to more options in the future
* Fix memory issue with RoccaContourDataBlocks not being released for
garbage collection
Set RoccaContourDataBlock objects to null and stop PamObserver Timer to
force release
* Fix problem tracing whistles in Rocca spectrogram pop-up
Whistle and raw data were being cleared before the user had time to trace out the whistle, causing PAMGuard to throw an exception. Both were already being cleared when the pop-up window is closed, so no need to do it here.
* updated for training/testing classifiers
commit d5f504dcd1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Nov 10 18:08:31 2023 +0000
Bearing localiser offline save
Bug stopping it correctly saving data from the offline task to the
database fixed.
commit 7a44d49e27
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Oct 27 09:59:28 2023 +0100
X3 Version 2.2.3
Add maven jar files for X3/SUD version 2.2.3
commit fa5fe9943d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Oct 26 14:44:41 2023 +0100
update sud file management to more efficiently skip to the correct part
of a sud file when reading data offline.
commit 60435e567a
Author: Brian S Miller <93690136+BrianSMiller@users.noreply.github.com>
Date: Fri Sep 8 21:54:40 2023 +1000
Fixes issues #111 and fixes#112 (DIFAR module crashes and ability to use Deep Learning Detections in DIFAR module) (#110)
* Bugfix for OverlayMarks
Check for a null pointer exception in OverlayMarks that was causing a crash on startup.
* Bugfix for null pointer in symbol manager
Fix a bug that I found where the DIFAR module was crashing the symbol manager. Seems that this was due to this subclass of clip generator having a null value for it's uniqueName. I've fixed by checking for null values and assigning a generic symbol when null.
* DeepLearning detections canGenerateClips=true
Set flag in DeepLearning detector so that detections are considered 'clips' by Pamguard. This allows them to be processed automatically in the DIFAR Localisation module (and maybe others).
* DIFAR: bugfix frequency limits for auto-detections
Fix a bug in DIFAR module where the frequency limits of automated detections were not being set properly by the DIFAR module.
* DeepLearning - Bugfix to detection duration
Fix bug in deep learning detector where duration (in samples) was being set to number of samples in a hop instead of the number of samples in a segment.
Bug in logger forms annotatoins. Crashing when a data field (i.e.
latlong) had > 1 database field.
Also added data selector to Detection grouper list display and fixed
feature in screen position which had a nasty habit of moving the display
to monitor 0 on multiscreen setups.
* Update FileListWorker.java
* Support batch processing
Multicast controller and a couple of additional commands to work with
the batch processing plugin.
* Database float unpack
Better unpacking checks of floats coming back from the database
* Batch changes
Changes in support of batch processing
* Small changes for batch processing
* update X3 to get Detector parameters
X3 and PAMguard updated to get and save the SoundTrap click detector
parameters.
Bug causing npe when exporting data to database. Fixed problem.
And better error messages in some thrown exceptions to make it easier to
identify where errors are occurring.
Fixed bug in some level calculations where a channel map instead of a
single channel was being passed to the function performing the calcs.
Was OK if hydrophones had same gain, but got it wrong if they were
different.
* Adding comments to table definitions.
Update tabledefs so tableitems can have descriptions. Useful to the
coder, but can also export formal xms schema for each table.
* Writing xml schema
Writing xml schema for PAMGuard database with annotations as complex
types
* Working SUD click extractor
Seems to be mostly working and can generate PAMGuard click files
automatically when processing SUD files using the soundtrap click
detector
* Small changes to SUD in PAMGuard
* Better SUD timing
Using latest microsecond time extraction from SUD unpack
* SUD Processing
Extraction of SUD file clicks with SoundTrap Click Detector. Timing now
correct. Added some help pages.
* Functional SUD Reader and SUD Click Extractor
All seems working. Seems to throw the odd exception at end of file, but
works OK.
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
* Update DLModelWorker.java
* Create matched_click_classifer_help.md
* Update help files for matched click classifier
* Update matched_click_classifer_help.md
* Update matched_click_classifer_help.md
* New screenshots got help files
* New screenshot
* Update matched_click_classifer_help.md
New help file for the matched click classified.
* Update matched_click_classifer_help.md
* Squashed commit of the following:
commit 6b15b3d536
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 15:21:28 2022 +0100
Change min java version to 11 which should be ok on some embedded
systems.
commit 4b3a37636b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 14:30:46 2022 +0100
CTD Fixes
Couple more fixes to menus and datablock selection
commit c641c58e4f
Author: Jamie Mac <macster110@gmail.com>
Date: Tue Aug 23 14:19:28 2022 +0100
Bug fixes to click train detector (#51)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised …
* Bug fixes to the matched click classifier
The matched click classifier was not working when an in built click classifier was used. This was caused by an index out of bounds exception in the alarm system.
Added new features;
* The Time base display now exports sample rate to .mat files.
* Bug fix file separator on time base display so it works on mac and Linux
* Matched click classifier imports the first click in a list of click structures as a template.
* Changed default length for restricted bins to 2048.
* Add picture for help file
* Update matched_click_classifer_help.md
* Update matched_click_classifer_help.md
* Squashed commit of the following:
commit b01cb4d100
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 13 11:19:31 2022 +0100
Fix bug in 3DOffline task
Problems with making catalogue of offline tasks. not important for now,
but needs revisiting.
commit ae6e2f947b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 13 09:12:34 2022 +0100
Merge Dougs fork (#53)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
* Daylight saving problem
Fix daylight saving problem in generation of timestamps in SQLTypes. See long explanation in SQLTypes.java. Only occurred in the hour after daylight saving starts.
commit cd89c65d7c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 13 09:07:11 2022 +0100
Fix synchronization problem in RawDataTransfroms
commit 6b15b3d536
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 15:21:28 2022 +0100
Change min java version to 11 which should be ok on some embedded
systems.
commit 4b3a37636b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 14:30:46 2022 +0100
CTD Fixes
Couple more fixes to menus and datablock selection
commit c641c58e4f
Author: Jamie Mac <macster110@gmail.com>
Date: Tue Aug 23 14:19:28 2022 +0100
Bug fixes to click train detector (#51)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+…
* Fixes to click train detector and deep learning
* Squashed commit of the following:
commit 313ce0c46f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Sep 21 15:55:12 2022 +0100
Help update (#60)
* Plugin Help
Small change to Help system so that plugins under development can more
easily display their help
* PamModel update
Notes on how to add a plugin to the model during the plugin development
phase.
* Click Train Detector Help
* Help for backup manager
commit 290f2fbb95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Sep 21 15:54:01 2022 +0100
Click Train Detector help (#59)
* Plugin Help
Small change to Help system so that plugins under development can more
easily display their help
* PamModel update
Notes on how to add a plugin to the model during the plugin development
phase.
* Click Train Detector Help
* Help for backup manager
commit 6aefbc124b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 20 17:34:30 2022 +0100
Merge from DG fork (#58)
* Plugin Help
Small change to Help system so that plugins under development can more
easily display their help
* PamModel update
Notes on how to add a plugin to the model during the plugin development
phase.
commit eb176a4568
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:10:09 2022 +0100
Merge from dg (#57)
commit dee7e1d52e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:08:32 2022 +0100
Merge pull request #13 from PAMGuard/main (#56)
commit 1ed74bebe3
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:06:22 2022 +0100
Merge pull request #13 from PAMGuard/main (#55)
commit fbe39a7416
Merge: 0114c80425dd21
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:05:16 2022 +0100
Merge branch 'main' into main
commit 425dd21d9f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:01:45 2022 +0100
Data selector for whistle classifier
Added standard data selection options to whistle classifier output, and
also made it a 'Detector' type for down stream data connections
commit 0114c80d61
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 16:59:37 2022 +0100
Work on click train detector help
commit c8e271734f
Author: Jamie Mac <macster110@gmail.com>
Date: Thu Sep 15 09:18:48 2022 +0100
Bug fixes to matched click classifier (#54)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher t…
* fix bug in TDOA
* Squashed commit of the following:
commit 149dfab281
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 30 09:56:13 2022 +0100
Work on bug fixes in CTD classifier (#72)
commit 91a704b07a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 30 09:54:33 2022 +0100
Work on bug fixes in CTD classifier (#71)
commit d01576c855
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 30 09:53:51 2022 +0100
Work on bug fixes in CTD classifier (#70)
commit 11bed6ffba
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 29 14:56:29 2022 +0100
Work on bug fixes in CTD classifier (#69)
commit fccc0a715d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 29 14:54:30 2022 +0100
Work on bug fixes in CTD classifier
commit 5983f30ded
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 27 16:44:12 2022 +0100
Delete C:\temp\PamGuardTesting 2_02_04f\PAMBinary directory
Get rid of a folder of pgdf files that Jamie had added to the repo
commit 075aceb4aa
Author: Jamie Mac <macster110@gmail.com>
Date: Tue Sep 27 16:41:05 2022 +0100
Click train detector bug fix (#68)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
…
* Click train fixes
* Fixes to click train detector
* Squashed commit of the following:
commit 3a452936c0
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 30 14:50:33 2022 +0100
Fixes from DG (#74)
* Work on bug fixes in CTD classifier
* couple of final neatenings up of CTD
commit 4015461fbc
Author: Jamie Mac <macster110@gmail.com>
Date: Fri Sep 30 14:23:17 2022 +0100
Fixes to click train detector (#73)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
…
* Fix to click train detector
NO_SPECIES flag was not being in standard classifier so beaked whales were being classified.
* Getting sud files working
* .sud decompression implemented
Sud decompression implemented in real time and viewer mode. .sudx files hold a file map which is reloaded allowing rapid scrolling of sud files in viewer mode.
* Rewrite how PAMGuard manages Audio Files
PAMGuard audio file management is a mess (sorry Doug) requiring changes to code in at least 3 separate classes to make a new type of audio file work in real time and viewer mode.
Have consolidated all audio file stuff into a PamAudioFileManager class which has a static getInstance() function. Any new type of audio file added in future (e.g. next is probably AudioMoth triggered recordings) then all that is needed is the Interface PamAudioFileloader to be satisfied and added to PamAudioFileManager list of audio file loaders.
* Bug fix for sud in viewer mode and FX updates
Fixed bug in sud file where IO exception occurred at the end of a file in viewer mode.
Updates to click detector dialog in FX GUI.
Updates to example sound factory.
* Some more work on FX GUI
* Added some validators in FX GUI
ValidatorFX is awesome
* Updates to FX GUI
* Squashed commit of the following:
commit 67060016c2
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Oct 21 12:26:42 2022 +0100
REsolve issues in binayUIDFunctions
commit 61c3d80f30
Merge: 1de5ec64473d1b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Oct 21 12:23:08 2022 +0100
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main
commit 1de5ec6e11
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Oct 21 12:22:09 2022 +0100
Change error reporting in Binary UID functions
Message on screen rather than stack trace since it's normal when a psfx
moves to a different pc
commit 4473d1b1bf
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Oct 21 11:12:04 2022 +0100
Merge from DG (#77)
* Work on bug fixes in CTD classifier
* couple of final neatenings up of CTD
* DWV Import
Fixed DWV importer so that a binary file is still created if a DWV file
doesn't exist. this is totally normal in quiet conditions, so the
correct thing to do is to generate a binary file with no data so that
effort is correctly recorded.
* Error reporting in -nogui
A lot of warnings were being issued and trying to use the default window
which caused a null pointer when running -nogui. This is fixed by a) not
trying to access frames which are null and b) changing the PAMWarning
system to write messages to terminal rather than open a dialog.
commit 63cc66a4b1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Oct 18 17:04:16 2022 +0100
Merge from DG (#76)
* Work on bug fixes in CTD classifier
* couple of final neatenings up of CTD
* DWV Import
Fixed DWV importer so that a binary file is still created if a DWV file
doesn't exist. this is totally normal in quiet conditions, so the
correct thing to do is to generate a binary file with no data so that
effort is correctly recorded.
commit e4faed5cfc
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Oct 4 11:18:37 2022 +0100
Add exitnosave command
Add command for UDP or terminal control which will exit PAMGuard without
first saving the settings
commit f4f7cc59b6
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Oct 3 14:30:22 2022 +0100
Fix to click trian detector (#75)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
…
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
* Update DLModelWorker.java
* Create matched_click_classifer_help.md
* Update help files for matched click classifier
* Update matched_click_classifer_help.md
* Update matched_click_classifer_help.md
* New screenshots got help files
* New screenshot
* Update matched_click_classifer_help.md
New help file for the matched click classified.
* Update matched_click_classifer_help.md
* Squashed commit of the following:
commit 6b15b3d536
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 15:21:28 2022 +0100
Change min java version to 11 which should be ok on some embedded
systems.
commit 4b3a37636b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 14:30:46 2022 +0100
CTD Fixes
Couple more fixes to menus and datablock selection
commit c641c58e4f
Author: Jamie Mac <macster110@gmail.com>
Date: Tue Aug 23 14:19:28 2022 +0100
Bug fixes to click train detector (#51)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised …
* Bug fixes to the matched click classifier
The matched click classifier was not working when an in built click classifier was used. This was caused by an index out of bounds exception in the alarm system.
Added new features;
* The Time base display now exports sample rate to .mat files.
* Bug fix file separator on time base display so it works on mac and Linux
* Matched click classifier imports the first click in a list of click structures as a template.
* Changed default length for restricted bins to 2048.
* Add picture for help file
* Update matched_click_classifer_help.md
* Update matched_click_classifer_help.md
* Squashed commit of the following:
commit b01cb4d100
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 13 11:19:31 2022 +0100
Fix bug in 3DOffline task
Problems with making catalogue of offline tasks. not important for now,
but needs revisiting.
commit ae6e2f947b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 13 09:12:34 2022 +0100
Merge Dougs fork (#53)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
* Daylight saving problem
Fix daylight saving problem in generation of timestamps in SQLTypes. See long explanation in SQLTypes.java. Only occurred in the hour after daylight saving starts.
commit cd89c65d7c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 13 09:07:11 2022 +0100
Fix synchronization problem in RawDataTransfroms
commit 6b15b3d536
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 15:21:28 2022 +0100
Change min java version to 11 which should be ok on some embedded
systems.
commit 4b3a37636b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 23 14:30:46 2022 +0100
CTD Fixes
Couple more fixes to menus and datablock selection
commit c641c58e4f
Author: Jamie Mac <macster110@gmail.com>
Date: Tue Aug 23 14:19:28 2022 +0100
Bug fixes to click train detector (#51)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+…
* Fixes to click train detector and deep learning
* Squashed commit of the following:
commit 313ce0c46f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Sep 21 15:55:12 2022 +0100
Help update (#60)
* Plugin Help
Small change to Help system so that plugins under development can more
easily display their help
* PamModel update
Notes on how to add a plugin to the model during the plugin development
phase.
* Click Train Detector Help
* Help for backup manager
commit 290f2fbb95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Sep 21 15:54:01 2022 +0100
Click Train Detector help (#59)
* Plugin Help
Small change to Help system so that plugins under development can more
easily display their help
* PamModel update
Notes on how to add a plugin to the model during the plugin development
phase.
* Click Train Detector Help
* Help for backup manager
commit 6aefbc124b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 20 17:34:30 2022 +0100
Merge from DG fork (#58)
* Plugin Help
Small change to Help system so that plugins under development can more
easily display their help
* PamModel update
Notes on how to add a plugin to the model during the plugin development
phase.
commit eb176a4568
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:10:09 2022 +0100
Merge from dg (#57)
commit dee7e1d52e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:08:32 2022 +0100
Merge pull request #13 from PAMGuard/main (#56)
commit 1ed74bebe3
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:06:22 2022 +0100
Merge pull request #13 from PAMGuard/main (#55)
commit fbe39a7416
Merge: 0114c80425dd21
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:05:16 2022 +0100
Merge branch 'main' into main
commit 425dd21d9f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 17:01:45 2022 +0100
Data selector for whistle classifier
Added standard data selection options to whistle classifier output, and
also made it a 'Detector' type for down stream data connections
commit 0114c80d61
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 15 16:59:37 2022 +0100
Work on click train detector help
commit c8e271734f
Author: Jamie Mac <macster110@gmail.com>
Date: Thu Sep 15 09:18:48 2022 +0100
Bug fixes to matched click classifier (#54)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
* Bug fixes to the click train detector
Bearing classifier section now updates properly when dialog reopened
Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units.
* Squashed commit of the following:
commit 5a37bfe915
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Aug 19 08:17:06 2022 +0100
Changes from DG branch (#50)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
* Java version
Changes unpacker to deal with non numeric characters on Linux
* Fix to getVersion()
So new version of this command should now work on Linux and Windows.
* Multiport test
Quick tester for multiport comms
* Spectrogram display
Stop spectrogram display continually recreating panels since it was
unsubscribing discarded ones and sometimes causing crash in observable
notifications.
* Backup manager bug
Error if no database. Fixed.
commit b08e86e330
Author: Jamie Mac <macster110@gmail.com>
Date: Wed Aug 17 09:16:52 2022 +0100
Bug fix for click train detector (#49)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 9a9f542d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:42:45 2022 +0100
Merge DG to Main (#46)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 49cd547aee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:40:29 2022 +0100
Merge DG branch (#45)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* UDP Control
Added multiport functionality
commit 016cfd0da5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:35:06 2022 +0100
Dialog positioning
New functions to better positions dialogs on screen
commit c9f2ab3e97
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 11:13:24 2022 +0100
puch to main (#44)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
commit 55f5a3fcf1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Aug 1 10:59:36 2022 +0100
Group detections menu
Small changes to limit the number of menu items in "Add to existing
group" to a maximum of 25 entries.
commit b3f6c0e665
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 29 10:50:45 2022 +0100
Handle -nogui option in PamWorker
PamWorker used to catalog files at startup (if a file folder input
system is used). This creates a progress dialog. Stop it appearing in
-nogui operations.
commit 8569b6b579
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jul 22 08:30:47 2022 +0100
Click display fixes (#41)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
commit 128a512ff6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 16:37:57 2022 +0100
Another attempt at stopping it crashing on a headless system
Dealing with displays that get created for clickangle vetos and a call
to the gui in the click train detector.
commit 6eaa6e4978
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 19 08:20:07 2022 +0100
nogoi fix for headless systems. (#40)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
commit 9fdd30556b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jul 12 15:53:07 2022 +0100
Variable sound output level (#39)
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Bug fixes to click train detector
Fixed bug with number of coasts in the MHT Kernel
Added an option for amplitude to have a maximum
Removed print statements.
* Bug fix for click train logging
The size of the string classifers field was dynamically set - this was a bug.
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
commit ef0330173b
Author: Jamie Mac <macster110@gmail.com>
Date: Mon Aug 8 10:32:19 2022 +0100
Click trian detector fixes (#48)
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
* Updates to FX GUI
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Merge fixes to click train detector
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Screenshots
* Updates and bug fixes to click train detector and CPOD importer
* Fix standard classifier JSON logging
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Bug fix to UI
* Bug fixes to FX GUI
* Updates to click train detector
* Squashed commit of the following:
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updates to click train detector
* Squashed commit of the following:
commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 14 06:52:20 2022 +0100
Add a new offlinefileslist function
commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Apr 27 09:43:31 2022 +0100
Update .gitignore
commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 2 19:40:24 2022 +0100
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* fix problem in SummaryComand
* Update command line options
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.
* Update command line options
* Update DecimatorParams.java
* couple of updates to support new contact collator plugin
* Sorting out sample rate info in clip display to support Contact Collator
plugin
* FLAC Speed
Improve flac speed
* Update .gitignore
* Update .gitignore
* Updates to support new features in Contact Collator
* Small update to RawDatautils to handle null data
* Updated data selector for click train detector
* Click train detector updates and bug fixes
Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.
Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.
* Bug fix and improvements for Ketos
Ketos models now automatically set the correct sample length when loaded.
Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions.
* Updates to deep learning and FX GUI
Added some more example sounds to deep learning UI.
Updated click detector in the FX GUI.
* PAMGuard FX sound output update
* Updates to FX GUI
* Updates to FX GUI
* Update RawDataTransforms.java
* Fixes to FX UI
* Squashed commit of the following:
commit 11ba8bf91e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 4 11:45:47 2022 +0100
MErge from DG Branch (#47)
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher t…
Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
* Plugin Help
Small change to Help system so that plugins under development can more
easily display their help
* PamModel update
Notes on how to add a plugin to the model during the plugin development
phase.
* Click Train Detector Help
* Help for backup manager
* Temp version 2.02.04ac
CTD data selector fixes
Fixed both the way the CTD uses data selectors from other detectors AND
the way that it's own data selector works.
* Variable sound output level
Mods to SoundPlayback module to allow additional parameters. Implemented
system for NI cards to allow changes to selected output voltage range
meaning output can be boosted to level higher than current default.
* Code to support nogui operations when no screens present on headless
system
* Fix problem of nogui headless operation trying to access screen size.
* Click detector display fixes
1. ICI not displaying correctly
2. Component sizes in display dialog on hres monitors
* Work on batch processing, after testing of options to autostart,
autoexit and set wav file folder, database and binary store.
* Update MHTClickTrainAlgorithm.java
Fix unsynchronised access to a datablock in click train detector which was causing index errors.
* Revamp of offline process messaging and control
Includes some databsae logging of completed tasks
* Offline task logging
Bit more work, including notes and database storage of task
reprocessing. Guess this could all become 'proper' PAMGuard data and be
shown in a table on the display but that not priority enough.
* Dialog packing
Fix a couple of dialogs which don't back well on HDPI monitors
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* More screenshots
* Add screenshots
* Update click_train_help.md
* Add classifier screenshot
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update POM with latest jdl4pam
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Update pom.xml
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Update click_train_help.md
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Screenshots
* Update click_train_help.md
* More screenshots
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots
* Add classifier screenshot
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Add screenshots for click train detector help
* Screenshots
* Update click_train_help.md
* Defult option for CPOD and porpoise to click train detector.
Also a minor
* Updates to click train detector
New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings
* Create click_train_help.md
* Update click_train_help.md
* Update click_train_help.md
* Updates and bug fixes to click train detector and CPOD importer
* Bug fix for raw spectrogram in TDDisplayFX
* Update KetosClassifier.java
* Fix standard classifier JSON logging
* Fixed bug in sweep classifier when using SoundTrap click detections
* Added some colour averaging in the TFDisplayFX spectrgoram
* Bug fix for rainbow click bearings
Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup
* Google humpback whale deep learning classifier
Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.
* Updated the prediction plots on time display
Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.
* Updates to TDisplayFX
yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX
* Merge fixes to click train detector
* Bug fix to UI
Jamie Mac