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Final updates for Version 2.02.05
This commit is contained in:
Douglas Gillespie
parent
67060016c2
commit
7d62dfa542
299
README.html
299
README.html
@ -368,21 +368,21 @@ should be something like:</p>
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-Xms384m -Xmx4096m -Djava.library.path=lib64 -jar Pamguard_xxxxxx.jar</span></em></p>
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<p class=MsoNormal>The -Xms384m -Xmx4096m specify the initial and maximum heap
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size for the JVM being used to run Pamguard i.e. how much memory it gets to use.
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The default max size usually being too low.</p>
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size for the JVM being used to run Pamguard i.e. how much memory it gets to
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use. The default max size usually being too low.</p>
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<p class=MsoNormal>The -Djava.library.path=lib64 tells the JVM that it should
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look in the folder called "lib64" for the required shared libraries
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(change to <em><span style='font-family:"Calibri",sans-serif'>lib</span></em>
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for the 32 bit version).</p>
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look in the folder called "lib64" for the required shared libraries (change
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to <em><span style='font-family:"Calibri",sans-serif'>lib</span></em> for the
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32 bit version).</p>
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<p class=MsoNormal>For "Mixed" and "Viewer" modes just add
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a "-m" or "-v" to the list of java arguments. On Windows
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just run the appropriately named executable (e.g. PamguardBeta_MixedMode.exe or
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PamguardBeta_ViewerMode.exe):</p>
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<p class=MsoNormal><em><span style='font-family:"Calibri",sans-serif'>java
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-Xms384m -Xmx4096m -Djava.library.path=lib64 -jar PamguardBeta_xxxxxx.jar -v</span></em></p>
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<p class=MsoNormal><em><span style='font-family:"Calibri",sans-serif'>java -Xms384m
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-Xmx4096m -Djava.library.path=lib64 -jar PamguardBeta_xxxxxx.jar -v</span></em></p>
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<p class=MsoNormal><em><span style='font-family:"Calibri",sans-serif'> </span></em></p>
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@ -453,8 +453,8 @@ lang=EN-US>Latest Version 2.02.05 October 2022</span></h1>
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<p class=MsoNormal><span lang=EN-US>Changes to GUI to make dialog shorter for
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low DPI screens. </span></p>
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<p class=MsoNormal><span lang=EN-US>Complete rewrite of the classification
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system to have nested classifiers which can be enabled or disabled. </span></p>
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<p class=MsoNormal><span lang=EN-US>Complete rewrite of the classification system
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to have nested classifiers which can be enabled or disabled. </span></p>
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<p class=MsoNormal><span lang=EN-US>Changes to classification GUI to
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accommodate the new classification system.</span></p>
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@ -499,8 +499,8 @@ audio files. </span></p>
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<h2><span lang=EN-US>Bug Fixes</span></h2>
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<p class=MsoNormal><span lang=EN-US>Soundtrap DWV import. Will now generate binary
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files even if DWV file doesn’t exist (which is correct behavior in quiet
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<p class=MsoNormal><span lang=EN-US>Soundtrap DWV import. Will now generate
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binary files even if DWV file doesn’t exist (which is correct behavior in quiet
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conditions when no clicks were detected). </span></p>
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<p class=MsoNormal><span lang=EN-US>Spectrogram. Changes to stop occasional
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@ -511,6 +511,10 @@ monitors so that data fields are sized correctly. </span></p>
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<p class=MsoNormal><span lang=EN-US>Fixed a memory leak in ROCCA</span></p>
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<p class=MsoNormal><span lang=EN-US>Fixed issues with options in Click Detector
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bearing time display which (when using planar and 3D arrays) allow you to plot
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relative to the array, the vessel, or North. </span></p>
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<h1><a name="_Latest_Version_2.02.03_2"></a><span lang=EN-US>Version 2.02.03
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February 2022</span></h1>
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@ -709,16 +713,16 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
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new CPOD features </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>15. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Better interpolation of data by the Decimator when decimating/upsampling by a
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non-integer amount </p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Better interpolation of data by the Decimator when
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decimating/upsampling by a non-integer amount </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>16. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Noise Level Outputs - as an aid to performance diagnosis, some detectors
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(currently the GPL, Click Detector and Whistle and Moan Detector) are
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outputting additional noise metrics to their binary output files. These can be
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read with the <a href="https://sourceforge.net/projects/pamguard/files/Matlab/">PAMGuard
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(currently the GPL, Click Detector and Whistle and Moan Detector) are outputting
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additional noise metrics to their binary output files. These can be read with
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the <a href="https://sourceforge.net/projects/pamguard/files/Matlab/">PAMGuard
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Matlab library</a> and used to diagnose system performance in varying noise
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conditions. Improved displays within PAMGuard for these noise metrics will be
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included in a future release. </p>
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@ -726,10 +730,10 @@ included in a future release. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>17. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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An implementation of the Generalized Power Law Detector, developed by Tyler
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Helble ([Helble et al., ‘A generalized power-law detection algorithm for
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humpback whale vocalizations’, The Journal of the Acoustical Society of
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America, vol. 131, no. 4, pp. 2682–2699, 2012) is now available. For details,
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see the online help </p>
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Helble ([Helble et al., ‘A generalized power-law detection algorithm for humpback
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whale vocalizations’, The Journal of the Acoustical Society of America, vol.
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131, no. 4, pp. 2682–2699, 2012) is now available. For details, see the online
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help </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>18. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -751,10 +755,10 @@ Version 2.00.10</a> before proceeding with installation and use of this
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version.</b></p>
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<p class=MsoNormal>This version of PAMGuard has been bundled with Java 13
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(release 13.0.1). PSFX files generated in previous beta releases (2.xx.xx) should
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be compatible with this version, and vice-versa. PSF files generated in core
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releases (1.15.xx) can be loaded in this version, but will be converted to PSFX
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files when PAMGuard exits.</p>
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(release 13.0.1). PSFX files generated in previous beta releases (2.xx.xx)
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should be compatible with this version, and vice-versa. PSF files generated in
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core releases (1.15.xx) can be loaded in this version, but will be converted to
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PSFX files when PAMGuard exits.</p>
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<p class=MsoNormal><b><span lang=EN-US>Bug Fixes</span></b></p>
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@ -816,8 +820,8 @@ Measurement module. </p>
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<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Speed up adding subdetections to superdetections. </p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Speed up adding subdetections to superdetections. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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@ -969,15 +973,15 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
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Add functionality for bluetooth headsets. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Add user-facing option to adjust the startup delay for the time-correction
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(Global Time module). This provides a workaround to speed up analysis of
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thousands of wav files (i.e. by setting startup delay to 0 instead of default
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value of 2000 ms). </p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Add user-facing option to adjust the startup delay for the
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time-correction (Global Time module). This provides a workaround to speed up
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analysis of thousands of wav files (i.e. by setting startup delay to 0 instead
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of default value of 2000 ms). </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Add support for RS Aqua time format. </p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Add support for RS Aqua time format. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -1055,9 +1059,9 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
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Bug 433. Custom storage options were being lost when Pamguard restarted.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Bug 434. Pamguard Viewer mode was having problems importing settings from psfx
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file.</p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Bug 434. Pamguard Viewer mode was having problems importing
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settings from psfx file.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -1105,8 +1109,8 @@ files.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>13. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Bug 445. Overlay data in FX spectrogram display gets out of sync with
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underlying spectrogram image.</p>
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Bug 445. Overlay data in FX spectrogram display gets out of sync with underlying
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spectrogram image.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>14. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -1194,10 +1198,10 @@ Detector display. </p>
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<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
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This version of PAMGuard has been upgraded to make it compatible with Java 12.
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psfx files generated in previous beta releases should be compatible with this
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version, and vice-versa.</p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
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lang=EN-US> </span>This version of PAMGuard has been upgraded to make it
|
||||
compatible with Java 12. psfx files generated in previous beta releases should
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||||
be compatible with this version, and vice-versa.</p>
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||||
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -1352,8 +1356,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
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lang=EN-US> </span>Better display of microseconds in dialogs.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Added adaptive noise filter to Ishmael Detectors.</p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Added adaptive noise filter to Ishmael Detectors.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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@ -1478,8 +1482,8 @@ session, but not forever.</p>
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||||
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<!-- ************************************************************************************************************************** --><!-- ************************************************************************************************************************** -->
|
||||
|
||||
<h1><a name="_Latest_Beta_Version_2.00.14c"></a><span lang=EN-US>Beta Version
|
||||
2.00.14c October 2018</span></h1>
|
||||
<h1><a name="_Latest_Beta_Version_2.00.14c"></a><span lang=EN-US>Beta Version 2.00.14c
|
||||
October 2018</span></h1>
|
||||
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<p class=MsoNormal><span lang=EN-US>PAMGuard Version 2 contains major updates.
|
||||
You should read and understand the notes listed for <a
|
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@ -1586,8 +1590,7 @@ Annotation module which has now been given two text type annotations.</p>
|
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>9. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 391. Click Detector not registering change in multi-threading
|
||||
option.</p>
|
||||
</span>Bug 391. Click Detector not registering change in multi-threading option.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>10. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -1611,9 +1614,9 @@ position for hydrophone 0.</p>
|
||||
<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Better way of coupling scrollers in User Display panels - see new options in
|
||||
main menu.</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Better way of coupling scrollers in User Display panels -
|
||||
see new options in main menu.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
@ -1702,8 +1705,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>10. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 376. Error when using a serialised data map which spans a period of time
|
||||
in which Pamguard modules have changed.</p>
|
||||
</span>Bug 376. Error when using a serialised data map which spans a period of
|
||||
time in which Pamguard modules have changed.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>11. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -1743,8 +1746,7 @@ will be converted.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Many updates to the Video Range module. Will currently only work with
|
||||
landmarks.</p>
|
||||
Many updates to the Video Range module. Will currently only work with landmarks.</p>
|
||||
|
||||
<!-- ************************************************************************************************************************** -->
|
||||
|
||||
@ -1807,8 +1809,8 @@ Beta versions</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>11. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 366. Rocca manual whistle contour extraction throws error when
|
||||
trying to classify a boxed whistle</p>
|
||||
</span>Bug 366. Rocca manual whistle contour extraction throws error when trying
|
||||
to classify a boxed whistle</p>
|
||||
|
||||
<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
|
||||
|
||||
@ -1877,8 +1879,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>10.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 354. Whistle Classifier was crashing if user accidentally entered
|
||||
invalid parameters. Have added diagnostics to prevent this.</p>
|
||||
</span>Bug 354. Whistle Classifier was crashing if user accidentally entered invalid
|
||||
parameters. Have added diagnostics to prevent this.</p>
|
||||
|
||||
<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
|
||||
|
||||
@ -2023,11 +2025,11 @@ Note that this display is only available if you are running Java 8 or later. </s
|
||||
|
||||
<h3><span lang=EN-US>Event Marking and the Detection Group Localiser</span></h3>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>A new system of event marking which can be
|
||||
used both online and offline has been added to PAMGuard. Details are in the
|
||||
PAMGuard help file (Displays/Display Marking). Data can be selected on the Map,
|
||||
the Spectrogram Display and the new Time Display FX in a similar way and sent
|
||||
to other PAMGuard modules. The new marking and data selection system works with
|
||||
<p class=MsoNormal><span lang=EN-US>A new system of event marking which can be used
|
||||
both online and offline has been added to PAMGuard. Details are in the PAMGuard
|
||||
help file (Displays/Display Marking). Data can be selected on the Map, the
|
||||
Spectrogram Display and the new Time Display FX in a similar way and sent to
|
||||
other PAMGuard modules. The new marking and data selection system works with
|
||||
the new Detection Group Localiser. The Detection Group Localiser extends the
|
||||
functionality which always existed in the click detector to other types of data
|
||||
(e.g. Whistles) so that they can be grouped and tracked using target motion
|
||||
@ -2114,14 +2116,14 @@ switches/parameters to be included in *.ini files.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>Bug 308. Map Overlay Control. </span>Storage of data
|
||||
saying what get's plotted on each map and for how long became corrupted and the
|
||||
list grew to a ridiculous size. Code has been put in place to a) stop it
|
||||
happening again and b) to repair any configuration files which are corrupted.
|
||||
Corrupted files will be slow to load, slow to save and will be > several
|
||||
megabytes in size. It may be necessary to delete the PamguardSettings table in
|
||||
any databases since these too may have become oversized which will slow down viewer
|
||||
mode PAMGuard start-up.</p>
|
||||
</span><span lang=EN-US>Bug 308. Map Overlay Control. </span>Storage of data saying
|
||||
what get's plotted on each map and for how long became corrupted and the list
|
||||
grew to a ridiculous size. Code has been put in place to a) stop it happening
|
||||
again and b) to repair any configuration files which are corrupted. Corrupted
|
||||
files will be slow to load, slow to save and will be > several megabytes in
|
||||
size. It may be necessary to delete the PamguardSettings table in any databases
|
||||
since these too may have become oversized which will slow down viewer mode
|
||||
PAMGuard start-up.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2152,8 +2154,8 @@ happens when the user selects save as new configuration. This has been fixed.</p
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 315. code searched for file in working folder, which is the
|
||||
installation folder when starting PAMGuard using a shortcut link. But when
|
||||
double-clicking on a psf, the working folder is the location of the psf. This
|
||||
has been fixed.</p>
|
||||
double-clicking on a psf, the working folder is the location of the psf. This has
|
||||
been fixed.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>7.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -2182,8 +2184,8 @@ jar file will be required rather than a new bespoke PAMGuard installation.</span
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>Module code development remains largely
|
||||
unchanged, in most cases simply requiring the addition of an interface class.
|
||||
Instructions for the development of new modules utilizing the plug-in
|
||||
scheme can be found <a href="http://www.pamguard.org/16_HowtomakePlug-Ins.html"
|
||||
Instructions for the development of new modules utilizing the plug-in scheme
|
||||
can be found <a href="http://www.pamguard.org/16_HowtomakePlug-Ins.html"
|
||||
target="_blank">here</a>. Plug-in modules can be downloaded from the
|
||||
PAMGuard website here, but developers are encouraged to host and maintain their
|
||||
own modules.</span></p>
|
||||
@ -2191,8 +2193,8 @@ own modules.</span></p>
|
||||
<p class=MsoNormal><span lang=EN-US>Modules of interest to the general PAM
|
||||
community will remain as part of the core PAMGuard installation. However,
|
||||
specialized modules which are useful to only a small number of users have been
|
||||
removed and are available as a separate download. The following modules have
|
||||
been removed:</span></p>
|
||||
removed and are available as a separate download. The following modules have been
|
||||
removed:</span></p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:43.5pt;text-indent:-25.5pt'>1.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2374,9 +2376,9 @@ the database. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>The number of data streams associated with the click
|
||||
detector has been tidied up so that there are a) All Click, b) Tracked Clicks
|
||||
(those which are part of an event) and c) Events. </span></p>
|
||||
</span><span lang=EN-US>The number of data streams associated with the click detector
|
||||
has been tidied up so that there are a) All Click, b) Tracked Clicks (those
|
||||
which are part of an event) and c) Events. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2392,9 +2394,9 @@ automatic click train identification and tracking. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>The automatic click train identification is now using the
|
||||
same internal structures as the manual tracking, so it's possible to combine
|
||||
automatic and manual tracking. </span></p>
|
||||
</span><span lang=EN-US>The automatic click train identification is now using
|
||||
the same internal structures as the manual tracking, so it's possible to
|
||||
combine automatic and manual tracking. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2474,8 +2476,9 @@ today. </p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>5.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 277. Text fields in classifier dialog were not large enough to display
|
||||
times greater than 10ms. We have increased length of text fields in the dialog.</p>
|
||||
</span>Bug 277. Text fields in classifier dialog were not large enough to
|
||||
display times greater than 10ms. We have increased length of text fields in the
|
||||
dialog.</p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>6.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2493,8 +2496,8 @@ style='font-size:7.0pt;font-family:"Times New Roman",serif'> &n
|
||||
</span>Bug 279. GUI Resizing: The whole PAMGuard GUI would suddenly resize to
|
||||
something very small when a dialog is opened. This has been traced to improper
|
||||
use of a common dialog component SourcePanel which tries to repack its parent
|
||||
Window. Some programmers had inadvertently set it to repack the main PAMGuard GUI
|
||||
instead. This has been Fixed.</p>
|
||||
Window. Some programmers had inadvertently set it to repack the main PAMGuard
|
||||
GUI instead. This has been Fixed.</p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>8.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2568,8 +2571,8 @@ and datagram creation.</p>
|
||||
|
||||
<h1><a name="_Toc444450394"></a><span lang=EN-US>Version 1.15.00 February 2016</span></h1>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>Beta Version 1.15.00 64 bit and Core version
|
||||
1.15.00 32 bit. Both using identical Java core software but linking to
|
||||
<p class=MsoNormal><span lang=EN-US>Beta Version 1.15.00 64 bit and Core
|
||||
version 1.15.00 32 bit. Both using identical Java core software but linking to
|
||||
different libraries for control of sound input devices. </span></p>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>This is the first release of a 64 bit
|
||||
@ -2637,12 +2640,12 @@ boundaries when file durations are set to a maximum fixed value. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 262. Access to SQLite database conversion. This would fail when
|
||||
tables were present which were not created by PAMGuard. Fixes have been
|
||||
put in place for spaces in the table name or for not having an 'Id' column.
|
||||
Fixes have not been implemented for spaces in a column name or use of a
|
||||
reserved word as a column name, however if either of these problems do exist it
|
||||
will no longer crash but issue a clear warning and carry onto the next table.</p>
|
||||
</span>Bug 262. Access to SQLite database conversion. This would fail when tables
|
||||
were present which were not created by PAMGuard. Fixes have been put in
|
||||
place for spaces in the table name or for not having an 'Id' column. Fixes have
|
||||
not been implemented for spaces in a column name or use of a reserved word as a
|
||||
column name, however if either of these problems do exist it will no longer
|
||||
crash but issue a clear warning and carry onto the next table.</p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:18.0pt'><span lang=EN-US> </span></p>
|
||||
|
||||
@ -2815,9 +2818,9 @@ lang=EN-US>1.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times N
|
||||
</span>Spectrogram annotation marks. A simple system for marking spectrograms
|
||||
during real time analysis has been incorporated. To use it, add the module, in
|
||||
the spectrogram settings, select the annotation marks in the 'Mark Observers'
|
||||
tab of the spectrogram configuration dialog, and also right click on the
|
||||
spectrogram and select to display the annotations. Annotations are saved to the
|
||||
database so you will also need a database module in your configuration. </p>
|
||||
tab of the spectrogram configuration dialog, and also right click on the spectrogram
|
||||
and select to display the annotations. Annotations are saved to the database so
|
||||
you will also need a database module in your configuration. </p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
|
||||
lang=EN-US>2.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2877,8 +2880,8 @@ minutes and seconds. Now correctly displays the number of remaining days. </p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
|
||||
lang=EN-US>4.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 226. Spectrogram Mark Observer list doesn't refresh when modules added
|
||||
or removed. </p>
|
||||
</span>Bug 226. Spectrogram Mark Observer list doesn't refresh when modules
|
||||
added or removed. </p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
|
||||
lang=EN-US>5.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -3071,12 +3074,12 @@ marine mammal survey package. See online help for details. </p>
|
||||
|
||||
<p class=MsoNormal><i>Alarms</i> (Utilities Group)</p>
|
||||
|
||||
<p class=MsoNormal>This is a general system of visual and audio alarms
|
||||
developed by Doug Gillespie for use on a variety of projects. The alarms can be
|
||||
coupled to any module or detector in PAMGuard. Where appropriate, modules can
|
||||
control which of their data will cause an alarm action (e.g. in the Click
|
||||
detector you can set which types of classified click will fire the alarm). See
|
||||
online help for details. </p>
|
||||
<p class=MsoNormal>This is a general system of visual and audio alarms developed
|
||||
by Doug Gillespie for use on a variety of projects. The alarms can be coupled
|
||||
to any module or detector in PAMGuard. Where appropriate, modules can control
|
||||
which of their data will cause an alarm action (e.g. in the Click detector you
|
||||
can set which types of classified click will fire the alarm). See online help
|
||||
for details. </p>
|
||||
|
||||
<p class=MsoNormal><i>Noise Band Monitor</i> (Sound Processing Group)</p>
|
||||
|
||||
@ -3140,8 +3143,8 @@ Millisecond time is also now included in the output file names. </p>
|
||||
|
||||
<p class=MsoNormal>Datagram options in Viewer have been improved so that the
|
||||
user has to verify the time binning for datagrams the first time the viewer is
|
||||
run and can also change the time bins from the File menu (See the
|
||||
File/BinaryStore/Datagram options menu. </p>
|
||||
run and can also change the time bins from the File menu (See the File/BinaryStore/Datagram
|
||||
options menu. </p>
|
||||
|
||||
<p class=MsoNormal><i>Viewer Configuration</i></p>
|
||||
|
||||
@ -3274,9 +3277,9 @@ other data sources for the PAMGuard viewer. </p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'><i>Database</i></p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>Can now copy data from binary storage
|
||||
to the database offline for any module having both binary and database storage.
|
||||
</p>
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>Can now copy data from binary
|
||||
storage to the database offline for any module having both binary and database
|
||||
storage. </p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>Can create a blank MS Access
|
||||
database (2007 and later *.accdb formats only).</p>
|
||||
@ -3468,9 +3471,9 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Offline event marking. Offline event marking similar to functionality in
|
||||
RainbowClick is now available in the PAMGUARD viewer. Event summary data is stored
|
||||
in the database and can also be exported to text files (e.g. for importing into
|
||||
the Distance software). </p>
|
||||
RainbowClick is now available in the PAMGUARD viewer. Event summary data is
|
||||
stored in the database and can also be exported to text files (e.g. for
|
||||
importing into the Distance software). </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -3577,8 +3580,8 @@ the correct data stream. This has been fixed. </p>
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Whistle classifier has some new features in the classifier training
|
||||
panel. It is also now possible to export training data files directly from
|
||||
binary data files. </p>
|
||||
panel. It is also now possible to export training data files directly from binary
|
||||
data files. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -3617,11 +3620,11 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
|
||||
<p class=MsoNormal>2. Improved offline viewer functionality. </p>
|
||||
|
||||
<p class=MsoNormal>The offline viewer is much improved with better data scrolling
|
||||
and the ability to view data either stored in the database or the binary
|
||||
storage system. Work has stated on functions which read and use data stored in
|
||||
audio files. This is currently limited to re-calculating and displaying
|
||||
displaying spectrogram data during viewer mode operation. </p>
|
||||
<p class=MsoNormal>The offline viewer is much improved with better data
|
||||
scrolling and the ability to view data either stored in the database or the
|
||||
binary storage system. Work has stated on functions which read and use data
|
||||
stored in audio files. This is currently limited to re-calculating and
|
||||
displaying displaying spectrogram data during viewer mode operation. </p>
|
||||
|
||||
<p class=MsoNormal>3. Heading sensor readout</p>
|
||||
|
||||
@ -3831,10 +3834,10 @@ port is closed. Might prevent a few problems when using a GPS. </p>
|
||||
<p class=MsoNormal>Crashes caused in real time or Mixed Mode if the number of
|
||||
software channels exceeds the number of hydrophones configured in the array
|
||||
manager. It is of course illogical to have software channels which are not
|
||||
assigned to a hydrophone, so rather than entirely prevent PAMGUARD from
|
||||
crashing I have inserted additional checks into the hydrophone array dialog
|
||||
which will prevent the user from closing that dialog unless all software
|
||||
channels are assigned to a hydrophone. </p>
|
||||
assigned to a hydrophone, so rather than entirely prevent PAMGUARD from crashing
|
||||
I have inserted additional checks into the hydrophone array dialog which will
|
||||
prevent the user from closing that dialog unless all software channels are
|
||||
assigned to a hydrophone. </p>
|
||||
|
||||
<h2><span style='font-weight:normal'>Version 1.8.01 Beta February 2010</span></h2>
|
||||
|
||||
@ -3929,17 +3932,17 @@ classifier is still available). </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bearing ambiguity resolution for planar and volumetric arrays. New features
|
||||
in array dialog for estimations of errors on array location. These feed into to
|
||||
a maximum likelihood estimate of angles from small 2D or 3D sub arrays to give
|
||||
two polar angle coordinates. this can be used to resolve left right ambiguity
|
||||
and is implemented for both the click and the whistle/moan detectors. As a
|
||||
result, the click detector bearing time display can now be set to go from -180
|
||||
to 180 degrees rather than 0 - 180 degrees. In this case, clicks in the upper
|
||||
half of the bearing display will be to port and clicks in the right half will
|
||||
be to starboard. As you pass a whale which is to port, the clicks will move UP
|
||||
the display. In the long term, I hope to turn this display around so that time
|
||||
is up the screen rather than across. </p>
|
||||
</span>Bearing ambiguity resolution for planar and volumetric arrays. New
|
||||
features in array dialog for estimations of errors on array location. These
|
||||
feed into to a maximum likelihood estimate of angles from small 2D or 3D sub arrays
|
||||
to give two polar angle coordinates. this can be used to resolve left right
|
||||
ambiguity and is implemented for both the click and the whistle/moan detectors.
|
||||
As a result, the click detector bearing time display can now be set to go from
|
||||
-180 to 180 degrees rather than 0 - 180 degrees. In this case, clicks in the
|
||||
upper half of the bearing display will be to port and clicks in the right half
|
||||
will be to starboard. As you pass a whale which is to port, the clicks will
|
||||
move UP the display. In the long term, I hope to turn this display around so
|
||||
that time is up the screen rather than across. </p>
|
||||
|
||||
<p class=MsoNormal><b>Small features and bug fixes</b></p>
|
||||
|
||||
@ -4134,10 +4137,10 @@ help pages</p>
|
||||
|
||||
<p class=MsoNormal><b>Bug Fixes</b></p>
|
||||
|
||||
<p class=MsoNormal>Memory leak caused by Night / Day colour manager now fixed. This
|
||||
would cause memory leaks when multiple files were being analysed off-line and
|
||||
would eventually crash PAMGUARD. The way that colours are managed in PAMGUARD
|
||||
has been rewritten. </p>
|
||||
<p class=MsoNormal>Memory leak caused by Night / Day colour manager now fixed.
|
||||
This would cause memory leaks when multiple files were being analysed off-line
|
||||
and would eventually crash PAMGUARD. The way that colours are managed in
|
||||
PAMGUARD has been rewritten. </p>
|
||||
|
||||
<p class=MsoNormal>Some issues with Swing fixed that might have been causing
|
||||
hang ups on startup especially on Macs/Linux machines</p>
|
||||
@ -4208,8 +4211,8 @@ file)</p>
|
||||
|
||||
<p class=MsoNormal><b>Changes</b></p>
|
||||
|
||||
<p class=MsoNormal>The User Input module (for text entry of information by the user)
|
||||
has been moved from the Displays sub menu of the Add Modules menu, to
|
||||
<p class=MsoNormal>The User Input module (for text entry of information by the
|
||||
user) has been moved from the Displays sub menu of the Add Modules menu, to
|
||||
Utilities. This will not affect how existing settings files are loaded. </p>
|
||||
|
||||
<p class=MsoNormal><b>Multi-screen environments.</b></p>
|
||||
@ -4228,8 +4231,8 @@ acquisition. </p>
|
||||
|
||||
<p class=MsoNormal><b>Bug fixes</b></p>
|
||||
|
||||
<p class=MsoNormal>Speed up of graphics, particularly regarding large
|
||||
quantities of gps track data</p>
|
||||
<p class=MsoNormal>Speed up of graphics, particularly regarding large quantities
|
||||
of gps track data</p>
|
||||
|
||||
<p class=MsoNormal>National Instruments cards with names > 20 characters
|
||||
long are now correctly recognised. </p>
|
||||
@ -4380,8 +4383,8 @@ channels or textual content change. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Model viewer. Have stopped it from jumping on top of the main PAMGUARD display
|
||||
when dialogs are closed. </p>
|
||||
</span>Model viewer. Have stopped it from jumping on top of the main PAMGUARD
|
||||
display when dialogs are closed. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
|
||||
2
pom.xml
2
pom.xml
@ -4,7 +4,7 @@
|
||||
<modelVersion>4.0.0</modelVersion>
|
||||
<groupId>org.pamguard</groupId>
|
||||
<artifactId>Pamguard</artifactId>
|
||||
<version>2.02.04ac</version>
|
||||
<version>2.02.05</version>
|
||||
<name>Pamguard Java12+</name>
|
||||
<description>Pamguard for Java 12+, using Maven to control dependcies</description>
|
||||
<url>www.pamguard.org</url>
|
||||
|
||||
@ -28,11 +28,11 @@ public class BTDisplayParameters implements Serializable, Cloneable, ManagedPara
|
||||
public static final String[] angleTypeNames = {"Relative to array", "Relative to vessel", "Relative to north"};
|
||||
|
||||
/**
|
||||
* Rotation options for angles.
|
||||
* Rotation options for angles. These should match the above angleTypeNames.
|
||||
*/
|
||||
static public final int ROTATE_TOARRAY = 0; // no rotation, raw angles relative to the array
|
||||
static public final int ROTATE_PITCHROLL = 1; // fix pitch and roll, but leave the heading relative to the array
|
||||
static public final int ROTATE_HEADPITCHROLL = 2; // rotate by heading pitch and roll.
|
||||
static public final int ROTATE_TOVESSEL = 1; // fix pitch and roll, but leave the heading relative to the array
|
||||
static public final int ROTATE_TONORTH = 2; // rotate by heading pitch and roll.
|
||||
|
||||
|
||||
// main BT display
|
||||
|
||||
@ -1642,16 +1642,26 @@ public class ClickBTDisplay extends ClickDisplay implements PamObserver, PamSett
|
||||
double[] rotAngles = new double[3];
|
||||
rotAngles[1] = Math.toRadians(oll.getPitch());
|
||||
rotAngles[2] = Math.toRadians(oll.getRoll());
|
||||
if (rType == BTDisplayParameters.ROTATE_HEADPITCHROLL) {
|
||||
if (rType == BTDisplayParameters.ROTATE_TOVESSEL) {
|
||||
// use head as well as pitch and roll.
|
||||
rotAngles[0] = Math.toRadians(oll.getHeading());
|
||||
PamVector[] vr = loc.getWorldVectors();
|
||||
if (vr != null && vr.length > 0) {
|
||||
return vr[0];
|
||||
}
|
||||
// rotAngles[0] = Math.toRadians(oll.getHeading());
|
||||
}
|
||||
if (rotAngles[0] == 0 && rotAngles[1] == 0 && rotAngles[2] == 0) {
|
||||
return v;
|
||||
else if (rType == BTDisplayParameters.ROTATE_TONORTH) {
|
||||
PamVector[] vr = loc.getRealWorldVectors();
|
||||
if (vr != null && vr.length > 0) {
|
||||
return vr[0];
|
||||
}
|
||||
}
|
||||
PamQuaternion pq = new PamQuaternion(rotAngles[0], rotAngles[1], rotAngles[2]);
|
||||
PamVector v2 = PamVector.rotateVector(v, pq);
|
||||
return v2;
|
||||
// if (rotAngles[0] == 0 && rotAngles[1] == 0 && rotAngles[2] == 0) {
|
||||
// return v;
|
||||
// }
|
||||
// PamQuaternion pq = new PamQuaternion(rotAngles[0], rotAngles[1], rotAngles[2]);
|
||||
// PamVector v2 = PamVector.rotateVector(v, pq);
|
||||
return v;
|
||||
}
|
||||
|
||||
private double angleFromYPos(int yPos) {
|
||||
|
||||
@ -498,7 +498,7 @@
|
||||
plotted on the time-based display by adding Click detections to the
|
||||
display and then using the right</p>
|
||||
<p align="center">
|
||||
<img width="940" height="500" src="resources/clicktrain_TDFx.png">
|
||||
<img width="940" height="500" src="resources/clicktrain_TDFX.png">
|
||||
</p>
|
||||
|
||||
<p>
|
||||
|
||||
Loading…
Reference in New Issue
Block a user