Commit Graph

95 Commits

Author SHA1 Message Date
Douglas Gillespie
653dc584ed Nearly ready for 2.02.14 release
Added CPOD help.
2024-10-09 16:58:21 +01:00
Jamie Mac
211ca7ab91
MacOS version of PAMGuard and minor UI updates (#170)
* Update exporter_help.md

Updated help for exporter

* Update .gitignore

* Bug fixes for deep learning classifier.

Updated the symbol options to make sure opacity is passed through the symbol chooser.

* Updates to the data map FX display

* Updates to DelphinID and Data ModelFX

Used a new writable image for much faster drawing in FX

* bb

* Delete C:\Users\Jamie Macaulay\MATLAB Drive\MATLAB\PAMGUARD\deep_learning\delphinID\whistle_image_example_java.mat

* Updates to DelphinID

* Updates to ReadMe and JavaFX GUI

* Update readme.md

Updates to ReadMe

* Updates to CPOD module and also delphinID classifier

* Fix colour scaling in FX data map

* Create cpod_help.md

* Update cpod_help.md

* Update cpod_help.md

* Updates to CPOD module

Added ability to export CPOD clicks
Added some extra features to data selector
Swing GUI for data selector (in progress)

* Updates to data map FX GUI

* Updates to CPOD module

* Added help files resources for CPOD

* Add CPOD resources for help

* Add CPOD resources for help

* Add CPOD resources for help

* Add CPOD resources for help

* Add CPOD resources for help

* Update cpod_help.md

* Update cpod_help.md

* Bug fixes for deep learning classifier.

Updated the symbol options to make sure opacity is passed through the symbol chooser.

* Updates to the data map FX display

* Updates to DelphinID and Data ModelFX

Used a new writable image for much faster drawing in FX

* Updates to ReadMe and JavaFX GUI

* bb

* Delete C:\Users\Jamie Macaulay\MATLAB Drive\MATLAB\PAMGUARD\deep_learning\delphinID\whistle_image_example_java.mat

* Updates to DelphinID

* Update readme.md

Updates to ReadMe

* Fix colour scaling in FX data map

* Updates to CPOD module and also delphinID classifier

* Updates to CPOD module

Added ability to export CPOD clicks
Added some extra features to data selector
Swing GUI for data selector (in progress)

* Create cpod_help.md

* Update cpod_help.md

* Update cpod_help.md

* Updates to data map FX GUI

* Updates to CPOD module

* Added help files resources for CPOD

* Add CPOD resources for help

* Add CPOD resources for help

* Add CPOD resources for help

* Add CPOD resources for help

* Add CPOD resources for help

* Update cpod_help.md

* Update cpod_help.md

* Bug fix to BT display

The BT display was not selecting clicks properly.

* Import bug fix

* Updates to data map FX GUI

* Updates to datamap FX

* Got date axis working properly.

* Added some arrows to the scroll bar for data map FX pane.

* Working on getting datagrams in FX saving

* Updates to DataMapFX and exporting annotations

* Update MLAnnotationsManager.java

* Working on adding annotations to exporter

* Bug fix for processing files and annotations for exporter

Rebase with main
Bug fix for processing files - stops only the last file processing when "Start normally" selected on data processing
R and MATLAB export of data annotation added.

* Add a ttoltip to the exporter

* Minor text change

* X3 fix and building for MACOS

* Update PAMGuard to build installer for MacOS

* Some fixes to Sound Acquisition dialog layout.

* Squashed commit of the following:

commit 1acddb4cc6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Tue Oct 8 15:03:32 2024 +0100

    MErge from DG (#168)

    * Localization output

    * update localiser output

    * Start effort management system

    * Start of Effort plotting

    Strat of effort plotting on map. Framework for using Effort data in other areas (such as Tethys output).

    * Logger forms update

    Effort and Symbol selectors working with Logger forms. Also functions to add, edit and delete form rows in Viewer mode.

    * Update LoggerFormGraphics.java

    add in correct symbol managemet to forms graphics.

    * Effort lines on map

    Sort of working OK in real time mode.

    * Working effort system

    Currently only for map, but seems to work OK

    * Update Tethys to latest nilus schema

    * Raven importer

    Start of a system for a raven importer. Not quite working yet.

    * Raven import

    Basic functionality working. Not nice to use though.

    * Tethys Localization work

    Abstracting out writing of localization objects and document header information so that individual localisers can give fine scale control of this stuff.

    * updated Nilus

    A few updates around track and target motion measures.

    * FX Plot for raven data

    Also sorted out symbols a bit and improved symbol selector in Generic plots.

    * Update spectrogram mark bearing display

    Remove the 90-angle bit

    * Raven extra columns

    Logging of data from additional Raven table columns

    * Start effort management system

    * Start of Effort plotting

    Strat of effort plotting on map. Framework for using Effort data in other areas (such as Tethys output).

    * Logger forms update

    Effort and Symbol selectors working with Logger forms. Also functions to add, edit and delete form rows in Viewer mode.

    * Effort lines on map

    Sort of working OK in real time mode.

    * Update Tethys to latest nilus schema

    * Tethys Localization work

    Abstracting out writing of localization objects and document header information so that individual localisers can give fine scale control of this stuff.

    * Ishmael Tethys output

    Added necessaries for Tethys output from Ishmael detectors. Also found a pretty major bug in the spectrogram correlation detector, where for each block of data it was only testing the first sample of each block, not all samples, for being over threshold.

    * Speed and algorithm improvements to Ish matched filter

    Seems to be errors in correlation, didn't support multiple channels and
    also used very old and slow FFT, so working to fix all three issues.

    * Updated matched filter

    Updated and working Matched filter, though still some thinking to do about how the scaling of this works, since currently scaled by the template, so whole thing is dependent on the input. Need to think of a better way to do this.

    * Update match filt normalisation

    Normalisation now correctly using both the template and the signal for normalisation so that it will be data amplitude independent.

    * invFFT improvements

    Use faster inverse FFT of real data in correlation / delay functions.

    * Improve ifft's in other modules to improve TDOA speeds

    * Sorting mess of spec plugin graphics

    Have got the Ishmael ones scrolling, but when scrolling, there is an offset in the data due to the lag of the correlation functions. Quite hard to fix with available timing data

    * Improve ish spectrogram plugin

    Sorted scaling and scrollling problems.

    * Improve startup checks

    Rethread startup checks so that a progress bar shows when PAMGuard is checking input and output files at start up. Also include single file processing in checks.

    * Apply all spectrogram overlays

    Apply to all function on spectrogram overlays so changes to overlays affect all panels.

commit f2f9870b6f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Wed Oct 2 15:13:12 2024 +0100

    V2.02.13c

    Release for installation on teaching lab machines.

commit 7533a7cfbe
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Tue Oct 1 15:00:51 2024 +0100

    Tethys output of Group3DLocalisations

    Output of Group3D localiser data. Localisations only, no Detections output for this one

commit ef494c0d0e
Author: Jamie Mac <macster110@gmail.com>
Date:   Mon Sep 30 13:10:59 2024 +0100

    Sud bug fix and updates to CPOD module.  (#162)

    * Update exporter_help.md

    Updated help for exporter

    * Update .gitignore

    * Bug fixes for deep learning classifier.

    Updated the symbol options to make sure opacity is passed through the symbol chooser.

    * Updates to the data map FX display

    * Updates to DelphinID and Data ModelFX

    Used a new writable image for much faster drawing in FX

    * bb

    * Delete C:\Users\Jamie Macaulay\MATLAB Drive\MATLAB\PAMGUARD\deep_learning\delphinID\whistle_image_example_java.mat

    * Updates to DelphinID

    * Updates to ReadMe and JavaFX GUI

    * Update readme.md

    Updates to ReadMe

    * Updates to CPOD module and also delphinID classifier

    * Fix colour scaling in FX data map

    * Create cpod_help.md

    * Update cpod_help.md

    * Update cpod_help.md

    * Updates to CPOD module

    Added ability to export CPOD clicks
    Added some extra features to data selector
    Swing GUI for data selector (in progress)

    * Updates to data map FX GUI

    * Updates to CPOD module

    * Added help files resources for CPOD

    * Add CPOD resources for help

    * Add CPOD resources for help

    * Add CPOD resources for help

    * Add CPOD resources for help

    * Add CPOD resources for help

    * Update cpod_help.md

    * Update cpod_help.md

    * Bug fixes for deep learning classifier.

    Updated the symbol options to make sure opacity is passed through the symbol chooser.

    * Updates to the data map FX display

    * Updates to DelphinID and Data ModelFX

    Used a new writable image for much faster drawing in FX

    * Updates to ReadMe and JavaFX GUI

    * bb

    * Delete C:\Users\Jamie Macaulay\MATLAB Drive\MATLAB\PAMGUARD\deep_learning\delphinID\whistle_image_example_java.mat

    * Updates to DelphinID

    * Update readme.md

    Updates to ReadMe

    * Fix colour scaling in FX data map

    * Updates to CPOD module and also delphinID classifier

    * Updates to CPOD module

    Added ability to export CPOD clicks
    Added some extra features to data selector
    Swing GUI for data selector (in progress)

    * Create cpod_help.md

    * Update cpod_help.md

    * Update cpod_help.md

    * Updates to data map FX GUI

    * Updates to CPOD module

    * Added help files resources for CPOD

    * Add CPOD resources for help

    * Add CPOD resources for help

    * Add CPOD resources for help

    * Add CPOD resources for help

    * Add CPOD resources for help

    * Update cpod_help.md

    * Update cpod_help.md

    * Bug fix to BT display

    The BT display was not selecting clicks properly.

    * Import bug fix

    * Updates to data map FX GUI

    * Updates to datamap FX

    * Got date axis working properly.

    * Added some arrows to the scroll bar for data map FX pane.

    * Working on getting datagrams in FX saving

    * Updates to DataMapFX and exporting annotations

    * Update MLAnnotationsManager.java

    * Working on adding annotations to exporter

    * Bug fix for processing files and annotations for exporter

    Rebase with main
    Bug fix for processing files - stops only the last file processing when "Start normally" selected on data processing
    R and MATLAB export of data annotation added.

    * Add a ttoltip to the exporter

    * Minor text change

* Small UI improvements for Sound Acquisition and MacOS

* Bug fix to exporter

* Update to help points

Updated help points for following modules
Deep learning
CPOD
Matched click classifier
Exporter

---------

Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
2024-10-09 12:39:26 +01:00
Douglas Gillespie
f2f9870b6f V2.02.13c
Release for installation on teaching lab machines.
2024-10-02 15:13:12 +01:00
Douglas Gillespie
26475cf366 Handle no sound card
Playback when no sound cards are present: Causes problems on new PC's which won't admit to a sound card if nothing is connected, making it impossible to use sound output to slow down processing of files (e.g. during teaching). Have added delay to sort this.
2024-09-15 13:09:26 +01:00
Douglas Gillespie
b420fd9f9d Major code cleanup
Cleanup of imports, whitespace, etc. across all of PAMGuard. No other changes to code apart from this automatic cleanup.
2024-08-27 12:48:16 +01:00
Douglas Gillespie
b9c613ea1b Final 2.02.13
final readme and version info file for 2.02.13 release.
2024-08-27 09:13:30 +01:00
Douglas Gillespie
a98e07f576 Nearing final release 2.2.13
help for data export
fixes to fx symbol opacity
removal of too much print output
change of error message when plugins loaded (don't say there is an error when a plugin is not compatible with that run mode)
Added option for SourcePanel to have a null return value (not used in any current detectors)
2024-08-26 17:51:10 +01:00
Douglas Gillespie
744e22d84e Merge from Jamie
Difficult merge, with many files becoming corrupted and having to be copied manually from Macster to PAMguard. hopefully all OK now.
2024-08-23 16:38:20 +01:00
Douglas Gillespie
cb1b28423e updates ready for 2.2.12 2024-08-19 15:55:25 +01:00
Douglas Gillespie
adf4c87781
Merge branch 'main' into main 2024-08-08 09:29:24 +01:00
Douglas Gillespie
2929372533 Tethys Localisation output
Not all types, but getting there.
2024-08-05 17:58:08 +01:00
Douglas Gillespie
62121bdbbd update jserialcom to 2.11.0 2024-08-04 11:41:08 +01:00
Douglas Gillespie
82adc06e3d
Merge DG branch (#144)
* Refactoring Tethys

A lot of refactoring of Nilus wrappers with more useful Objects for PAMGUard to work with.

* Improved document handling

Abstracted wrapper around nilus documents which allows easyish calling of internal functions in Localize and Detections document without a common base class.

* Fix doc deletion in detector output panel
2024-08-02 15:26:49 +01:00
Douglas Gillespie
4f87b7b661 Refactoring Tethys
A lot of refactoring of Nilus wrappers with more useful Objects for PAMGUard to work with.
2024-07-22 16:07:33 +01:00
Douglas Gillespie
32c7c9b263
Merge from Jamie (#143)
* Working on the exporter

* Working out on exporter

* Working on new symbol options for deep learning and sud file options in SoundAcquisition GUI

* Add zero pad option for sud files.

* Updates to sud zero pad options on FX GUI

* Implementing a data selector for the deep learning module

* Bug fix to data transforms if the wave data and sample length are different

* Updated POm to ignore test resources and updates to DL data selector

* Updates to DL data selector and POM

* Work on the data selector for the deep learning module.

* Working on the exporter

* Working out on exporter

* Working on new symbol options for deep learning and sud file options in SoundAcquisition GUI

* Add zero pad option for sud files.

* Updates to sud zero pad options on FX GUI

* Implementing a data selector for the deep learning module

* Updated POm to ignore test resources and updates to DL data selector

* Bug fix to data transforms if the wave data and sample length are different

* Updates to DL data selector and POM

* Work on the data selector for the deep learning module.

* Data selectors for deep learning models now working with FX

Still have to be implemented in Swing

* Update deep_learning_help.md

Updated help values to have some info on data selectors and symbol managers.

* Updates to deep learning symbol options for swing and data selector panel for swing

Made tooltips last longer on TD display  FX

* Update deep_learning_help.md

* Swing symbol modifiers for DL and peak freq

* Squashed commit of the following:

commit bad2255710
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Thu Jul 18 09:47:47 2024 +0100

    Better symbol options

    Add clearer options button to multi option symbol manager panel.

* Fix bugs in detection display

* Bug fix to hiding panes

* Squashed commit of the following:

commit 8b5b5b2f18
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Fri Jul 19 17:14:28 2024 +0100

    Updated data selectors for BT display

    Merging old status bar and new DataSelector options so that they work more consistently on the BT display.

commit bad2255710
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Thu Jul 18 09:47:47 2024 +0100

    Better symbol options

    Add clearer options button to multi option symbol manager panel.

* Deep learning bug fix

* Ignore the class path

* Squashed commit of the following:

commit 577670ccd0
Merge: 6510d226 8b5b5b2f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Mon Jul 22 09:35:01 2024 +0100

    Merge branch 'main' of https://github.com/PAMGuard/PAMGuard

commit 6510d2260e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Mon Jul 22 09:34:58 2024 +0100

    Remove unnecessary text output

commit 3da8401756
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Mon Jul 22 09:29:38 2024 +0100

    updates to Daq

    New DLL, and some LED control, but hasn't fixed stalling problem.

commit 8b5b5b2f18
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Fri Jul 19 17:14:28 2024 +0100

    Updated data selectors for BT display

    Merging old status bar and new DataSelector options so that they work more consistently on the BT display.

commit bad2255710
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Thu Jul 18 09:47:47 2024 +0100

    Better symbol options

    Add clearer options button to multi option symbol manager panel.

* Squashed commit of the following:

commit 687220dad5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Mon Jul 22 11:42:19 2024 +0100

    Change click data selector

    Change Click BT display so it can handle CompoundDataSelectors

commit 577670ccd0
Merge: 6510d226 8b5b5b2f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Mon Jul 22 09:35:01 2024 +0100

    Merge branch 'main' of https://github.com/PAMGuard/PAMGuard

commit 6510d2260e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Mon Jul 22 09:34:58 2024 +0100

    Remove unnecessary text output

commit 3da8401756
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Mon Jul 22 09:29:38 2024 +0100

    updates to Daq

    New DLL, and some LED control, but hasn't fixed stalling problem.

commit 8b5b5b2f18
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Fri Jul 19 17:14:28 2024 +0100

    Updated data selectors for BT display

    Merging old status bar and new DataSelector options so that they work more consistently on the BT display.

commit bad2255710
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Thu Jul 18 09:47:47 2024 +0100

    Better symbol options

    Add clearer options button to multi option symbol manager panel.

---------

Co-authored-by: Jamie Mac <macster110@gmail.com>
2024-07-22 11:55:06 +01:00
Douglas Gillespie
e419761f5c Updated POM
Exclude test datasets, trained models, and an unwanted ML library to reduce overall jar size back to something sensible.
2024-07-12 16:34:55 +01:00
Douglas Gillespie
7accb79f8d V2.02.12
Hopefully final version of V2.02.12
2024-06-24 15:43:00 +01:00
Douglas Gillespie
18cb59a209 update DL help 2024-06-24 13:28:02 +01:00
Douglas Gillespie
9d467593de
Big merge from doug (#139)
* binary store count

Fix issue in binary store object count

* update V10aa/other for testing

* update V10aa/other for testing

* reenable buffer dumping

* update V to 10ac for testing

* Additional diagnostics

Additional output of CPU usage for each module when stopping

* V 2.02.10ad for testing

Fixed issue of finding correct raw data block

* Tidying

Lots of GUI improvement and code tidying. Functionality to export
gzipped documents to reduce traffic.

* V 2.02.10ba for user testing

* Tidy up click selector

Improve layout and tips on dialog and improve logic for manual and
automatic event types.

* Menu tide up

* Update nilus maven for PAMGuard

* Fix reprocess choices

Make sure the choice to continue anyway is always present.

* Improve start of binary file timing

Code to better get binary files to start right on the hour when processing files offline rather than half a sec or so later.

* Fix early data discard

Fix issue in clip generator: when running very fast offline raw data being discarded before clips are generated. Changed threading model slightly and increased data keep time by 2x the thread jitter to try to avoid this.

* Update pom to JSerialCom 2.11.0

* V2.02.11e fix file start skip

Skipping start of files was causing click detector to not find clicks. Changed code so first seconds are still sent, but with data set to 0, rather than not sending data since that was causing sample counts in different bits of PAMGuard to get out of synch.
2024-06-20 10:10:06 +01:00
Douglas Gillespie
a6b0ccd780 V2.02.11d
Some small updates to DL module for DCL training workshop
2024-05-30 11:06:44 +01:00
Jamie Mac
bf20889743 Updates to exporter
Getting export capability working in PAMGuard
Updated POM to use more up to date repository
2024-05-24 11:30:01 +01:00
Jamie Mac
2c8d54b660 Update pom to more recent SQLite driver version 2024-05-13 16:52:28 +01:00
Jamie Mac
822832f179 Updates to DelphinID 2024-05-10 08:50:12 +01:00
Jamie Mac
c6d422d999 Getting DelphinID working and changes to the JavaFX detectin displays 2024-04-26 17:01:34 +01:00
Jamie Mac
9b77a97a17 Updates to deep learning module structure get delphinID working
Also sorted out some build issues with Tethys in the POM
2024-04-22 16:59:34 +01:00
Jamie Mac
ca2fef11e5 Bug fixes and updates to deep learning models
Defualt model for Atlantic humpback whale implemented
Koogu and zip model unit tests
2024-04-01 16:56:35 +01:00
Jamie Mac
1387428a32 Starting exporter and added new units tests for deep learning module. 2024-03-15 16:55:46 +00:00
Jamie Mac
aa6d289984 Add unit tests to deep learning and remove unwanted X3 libraries 2024-03-12 16:57:00 +00:00
Jamie Mac
da295502eb Creating export manager 2024-03-05 17:10:33 +00:00
Jamie Mac
45bf890a62 Implement zip model for deep learning classifier.
Implement zip models which allow packaging of deep learning models with metadata\
Fix TDdsiplayFX spinner bug
Bug fixes for deep learning module after testing
Implement a validator to warn if users have selected all or no classes for binary classifcation.
2024-03-01 15:23:16 +00:00
Jamie Mac
e8777ed6db Bug fix to Group localiser in offline mode
The group localiser was not loading hydrophone data
2024-02-26 14:36:38 +00:00
Jamie Mac
1069d1ecc3 Updates to FX GUI 2024-02-23 17:01:52 +00:00
Jamie Mac
6314c90467 Get CPOD click train import working. 2024-02-14 14:27:11 +00:00
Jamie Mac
0f220102c8 Implementing FPOD importing 2024-02-13 11:58:15 +00:00
Jamie Mac
5dc0e35605 Updates to CPOD import and FX
Sorted CSS out so that is accepts multiple stylesheets
Sorted plotting of waveforms from FPOD on dataPlotFX
Sorting out datamap and viewer model for FX GUI
2024-02-09 16:59:30 +00:00
Jamie Mac
68953d12fb Updates to FPOD and PAMGuardFX 2024-02-07 12:39:13 +00:00
Jamie Mac
9957bd3fa3 Implementing FPOD and updates to deep leanring module 2024-02-01 16:14:09 +00:00
Jamie Mac
37fe953474 Koogu working
Koogu now working...
2024-01-17 07:00:06 +00:00
Jamie Mac
1d8a4ad8b8 Updates to FX GUI
ArrayManager almsot done
2023-12-21 16:47:32 +00:00
Jamie Mac
25691563bf Update POM after rebase 2023-12-12 14:17:17 +00:00
Jamie Mac
54264a689b Squashed commit of the following:
commit 840e6c89a1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Thu Nov 16 20:36:14 2023 +0000

    R2.02.09d

    Fix matched template classifier import
    fix azigram help file image display

commit acc806d375
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Wed Nov 15 13:08:02 2023 +0000

    Updated X3 library to 2.2.6

commit a4f484c76c
Merge: 8e60ad2e d7c4c278
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Wed Nov 15 09:44:09 2023 +0000

    Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main

commit 8e60ad2eff
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Wed Nov 15 09:43:39 2023 +0000

    update to array diagnostics and sensor control

commit d7c4c278d8
Author: m2oswald <45486636+m2oswald@users.noreply.github.com>
Date:   Wed Nov 15 09:17:49 2023 +0000

    Added code to Rocca for training/testing classifier (#114)

    * allow Rocca to run without classifiers

    Fixed bug that threw an error if no classifier files were specified in Rocca Params dialog

    * add rocca switch to enable dev mode

    currently only shows/hides extra buttons in the Params dialog, but will
    extend to more options in the future

    * Fix memory issue with RoccaContourDataBlocks not being released for
    garbage collection

    Set RoccaContourDataBlock objects to null and stop PamObserver Timer to
    force release

    * Fix problem tracing whistles in Rocca spectrogram pop-up

    Whistle and raw data were being cleared before the user had time to trace out the whistle, causing PAMGuard to throw an exception.  Both were already being cleared when the pop-up window is closed, so no need to do it here.

    * updated for training/testing classifiers

commit d5f504dcd1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Fri Nov 10 18:08:31 2023 +0000

    Bearing localiser offline save

    Bug stopping it correctly saving data from the offline task to the
    database fixed.

commit 7a44d49e27
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Fri Oct 27 09:59:28 2023 +0100

    X3 Version 2.2.3

    Add maven jar files for X3/SUD version 2.2.3

commit fa5fe9943d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Thu Oct 26 14:44:41 2023 +0100

    update sud file management to more efficiently skip to the correct part
    of a sud file when reading data offline.

commit 60435e567a
Author: Brian S Miller <93690136+BrianSMiller@users.noreply.github.com>
Date:   Fri Sep 8 21:54:40 2023 +1000

    Fixes issues #111 and fixes #112 (DIFAR module crashes and ability to use Deep Learning Detections in DIFAR module) (#110)

    * Bugfix for OverlayMarks

    Check for a null pointer exception in OverlayMarks that was causing a crash on startup.

    * Bugfix for null pointer in symbol manager

    Fix a bug that I found where the DIFAR module was crashing the symbol manager. Seems that this was due to this subclass of clip generator having a null value for it's uniqueName. I've fixed by checking for null values and assigning a generic symbol when null.

    * DeepLearning detections canGenerateClips=true

    Set flag in DeepLearning detector so that detections are considered 'clips' by Pamguard. This allows them to be processed automatically in the DIFAR Localisation module (and maybe others).

    * DIFAR: bugfix frequency limits for auto-detections

    Fix a bug in DIFAR module where the frequency limits of automated detections were not being set properly by the DIFAR module.

    * DeepLearning - Bugfix to detection duration

    Fix bug in deep learning detector where duration (in samples) was being set to number of samples in a hop instead of the number of samples in a segment.
2023-12-12 12:51:13 +00:00
Jamie Mac
6e5f65d35b Updates to FX Gui and Deep Learning Module 2023-11-29 08:14:56 +00:00
Jamie Mac
fd3e8cae4b Bug fixes to group localiser.
Makes sure time dependent hydrophones positions are considered when localising
2023-10-23 10:38:06 +01:00
Jamie Mac
e1c70fa02e Adding mimplex to group localiser 2023-10-09 17:02:09 +01:00
Jamie Mac
46e0907cce Merge branch 'main' of https://github.com/macster110/PAMGuard 2023-10-09 14:56:14 +01:00
Jamie Mac
e8fc75dc9e Updates to FX GUI 2023-10-09 14:56:12 +01:00
Jamie Mac
7639eb5f6d Bug fixes to group localiser 2023-09-08 17:32:10 +01:00
Jamie Mac
e1462537f7 Fixes and code rationalisation for group 3D loclaiser 2023-08-25 09:36:26 +01:00
Douglas Gillespie
97e1241051 1,02.09a: Logger forms bug
Bug in logger forms annotatoins. Crashing when a data field (i.e.
latlong) had > 1 database field.

Also added data selector to Detection grouper list display and fixed
feature in screen position which had a nasty habit of moving the display
to monitor 0 on multiscreen setups.
2023-08-15 20:39:46 +01:00
Douglas Gillespie
84f2bd7ad7 V2.02.09
Fix to display time zone problem.
2023-06-29 11:44:00 +01:00