mirror of
https://github.com/PAMGuard/PAMGuard.git
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Getting DelphinID working and changes to the JavaFX detectin displays
This commit is contained in:
Jamie Mac
parent
7ee8562c0c
commit
c6d422d999
4
pom.xml
4
pom.xml
@ -303,14 +303,14 @@
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<dependency>
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<groupId>io.github.macster110</groupId>
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<artifactId>jpamutils</artifactId>
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<version>0.0.57</version>
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<version>0.0.58</version>
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</dependency>
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<!--jpam project - Deep learning java library -->
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<dependency>
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<groupId>io.github.macster110</groupId>
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<artifactId>jdl4pam</artifactId>
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<version>0.0.97</version>
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<version>0.0.98</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/gov.nist.math/jama -->
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114
src/Resources/css/delphinid_logo01.svg
Normal file
114
src/Resources/css/delphinid_logo01.svg
Normal file
@ -0,0 +1,114 @@
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id="text113"><tspan
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x="11.709678"
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y="81.967743"><tspan
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style="fill:#6f916f"
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id="tspan167">delphin</tspan><tspan
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id="tspan165">ID</tspan></tspan></text>
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</svg>
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114
src/Resources/delphinid_logo01.svg
Normal file
114
src/Resources/delphinid_logo01.svg
Normal file
@ -0,0 +1,114 @@
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x="11.709678"
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y="81.967743"><tspan
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style="fill:#6f916f"
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id="tspan167">delphin</tspan><tspan
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id="tspan165">ID</tspan></tspan></text>
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<path
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style="fill:none;stroke:#000000;stroke-width:0.85;stroke-dasharray:none;stroke-opacity:1"
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After Width: | Height: | Size: 5.2 KiB |
@ -398,15 +398,15 @@ public class TDControlFX extends TDControl implements UserDisplayNodeFX {
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@Override
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public void newSelectedDetectionGroup(DetectionGroupSummary detectionGroup, TDGraphFX tdGraph) {
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System.out.println("New selected detection group: " + detectionGroup);
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// System.out.println("New selected detection group: " + detectionGroup);
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tdDisplayController.getDisplayDataBlock().clearAll();
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if (detectionGroup==null || detectionGroup.getDataList().size()<=0) return;
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System.out.println("Add pam data: " + detectionGroup + " " + tdDisplayController.getDisplayDataBlock().countObservers());
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for (int i=0; i<tdDisplayController.getDisplayDataBlock().countObservers() ; i++) {
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System.out.println("Observer : " + tdDisplayController.getDisplayDataBlock().getPamObserver(i));
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}
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// System.out.println("Add pam data: " + detectionGroup + " " + tdDisplayController.getDisplayDataBlock().countObservers());
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// for (int i=0; i<tdDisplayController.getDisplayDataBlock().countObservers() ; i++) {
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// System.out.println("Observer : " + tdDisplayController.getDisplayDataBlock().getPamObserver(i));
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// }
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tdDisplayController.getDisplayDataBlock().addPamData(detectionGroup.getDataList().get(detectionGroup.getFocusedIndex()));
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if (isViewer()) tdDisplayController.getDisplayDataBlock().notifyNornalObservers(detectionGroup.getDataList().get(detectionGroup.getFocusedIndex()));
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@ -30,6 +30,7 @@ import pamViewFX.fxNodes.PamBorderPane;
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import pamViewFX.fxNodes.PamButton;
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import pamViewFX.fxNodes.PamHBox;
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import pamViewFX.fxNodes.PamStackPane;
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import pamViewFX.fxNodes.PamTabPane;
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import pamViewFX.fxNodes.hidingPane.HidingPane;
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import pamViewFX.fxStyles.PamStylesManagerFX;
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@ -43,8 +44,14 @@ import pamViewFX.fxStyles.PamStylesManagerFX;
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@SuppressWarnings("rawtypes")
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public class DetectionGroupDisplay extends PamBorderPane {
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/**
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* Show the settings within hiding panes within the display.
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*/
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public static final int DISPLAY_COMPACT = 0;
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/**
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* Show settings on top and to the right of the display
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*/
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public static final int DISPLAY_EXTENDED = 1;
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/**
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@ -211,21 +218,32 @@ public class DetectionGroupDisplay extends PamBorderPane {
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detectionDisplayHolder = new PamStackPane();
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TabPane settingsPane = new TabPane();
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settingsPane.setStyle(Styles.TABS_FLOATING);
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settingsPane.setTabClosingPolicy(TabClosingPolicy.UNAVAILABLE);
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// settingsPane.getStylesheets().addAll(PamStylesManagerFX.getPamStylesManagerFX().getCurStyle().getSlidingDialogCSS());
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PamTabPane settingsPane = new PamTabPane();
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settingsPane.setTabMinHeight(60);
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settingsPane.setMinHeight(60);
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// settingsPane.repackTabs();
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settingsPane.getTabs().add(new Tab("Data",detectionDisplay.getDataTypePane()));
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settingsPane.getTabs().add(new Tab("Settings",detectionDisplay.getSettingsHolder()));
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settingsPane.setAddTabButton(false);
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// settingsPane.getStyleClass().add(Styles.TABS_FLOATING);
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settingsPane.setTabClosingPolicy(TabClosingPolicy.UNAVAILABLE);
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//settingsPane.getStylesheets().addAll(PamStylesManagerFX.getPamStylesManagerFX().getCurStyle().getSlidingDialogCSS());
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Tab dataTab = new Tab("Data",detectionDisplay.getDataTypePane());
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Tab settingsTab = new Tab("Settings -BLAH",detectionDisplay.getSettingsHolder());
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settingsPane.getTabs().add(dataTab);
|
||||
settingsPane.getTabs().add(settingsTab);
|
||||
|
||||
hidingPane = new HidingPane(Side.RIGHT, settingsPane, detectionDisplayHolder, layoutType==DISPLAY_COMPACT, 0);
|
||||
|
||||
hidingPane.removeHideButton();
|
||||
hidingPane.getHideButton().setMinWidth(40);
|
||||
settingsPane.setTabStartRegion(hidingPane.getHideButton());
|
||||
|
||||
//now everything to pane.
|
||||
detectionDisplayHolder.getChildren().add(detectionDisplay);
|
||||
StackPane.setAlignment(detectionDisplay, Pos.CENTER);
|
||||
|
||||
settingsPane.setPadding(new Insets(35,0,0,0));
|
||||
//settingsPane.setPadding(new Insets(35,0,0,0));
|
||||
|
||||
Node icon = PamGlyphDude.createPamIcon("mdi2c-cog", PamGuiManagerFX.iconSize);
|
||||
detectionDisplay.getPlotPane().setHidePane(new PamBorderPane(settingsPane), icon, Side.RIGHT);
|
||||
|
||||
@ -16,7 +16,7 @@ import userDisplayFX.UserDisplayNodeFX;
|
||||
|
||||
/**
|
||||
* A group detection display with all the bits added to allow the display to be used in the FX GUI as
|
||||
* a stand alone user display.
|
||||
* a stand-alone user display.
|
||||
*
|
||||
* @author Jamie Macaulay
|
||||
*
|
||||
@ -211,8 +211,8 @@ public class DetectionGroupDisplayFX extends DetectionGroupDisplay implements U
|
||||
public boolean setDataUnit(PamDataUnit<?, ?> dataUnit){
|
||||
|
||||
/**
|
||||
* The extra stuff here is to make sure that the plot types for a specific detectin are saved. So for example
|
||||
* if viewing click spectrum then the spectrum plot is selected whenever 1) PAMGuard is opned again or 2) switching from
|
||||
* The extra stuff here is to make sure that the plot types for a specific detection are saved. So for example
|
||||
* if viewing click spectrum then the spectrum plot is selected whenever 1) PAMGuard is opened again or 2) switching from
|
||||
* one type of detection ot another e.g. whistle to click, then the click does nto revert to shwoing a waveform instead
|
||||
* of spectrum.
|
||||
*/
|
||||
@ -220,7 +220,7 @@ public class DetectionGroupDisplayFX extends DetectionGroupDisplay implements U
|
||||
if (currentDetection!=null) {
|
||||
//save the current selected detection plot for the particular type of data unit.
|
||||
String detectionPlotName = this.getDetectionDisplay().getCurrentDataInfo().getCurrentDetectionPlot().getName();
|
||||
// System.out.println("SET CURRENT DETECTION PLOT TO USE IS: " + detectionPlotName);
|
||||
//System.out.println("SET CURRENT DETECTION PLOT TO USE IS: " + detectionPlotName);
|
||||
detectionPlotParams.dataAxisMap.put(currentDetection.getParentDataBlock().getLongDataName(), detectionPlotName);
|
||||
}
|
||||
|
||||
|
||||
@ -20,7 +20,7 @@ public class DetectionPlotParams extends UserDisplayNodeParams implements Clonea
|
||||
/**
|
||||
*
|
||||
*/
|
||||
static final long serialVersionUID = 2L;
|
||||
static final long serialVersionUID = 3L;
|
||||
|
||||
/**
|
||||
* The data source for the detection plot.
|
||||
|
||||
@ -63,8 +63,14 @@ public class PamSVGIcon {
|
||||
}
|
||||
return instance;
|
||||
}
|
||||
|
||||
|
||||
@Deprecated
|
||||
public PamSVGIcon create(URL path, Color color, double lineWidth) throws Exception {
|
||||
return create(path);
|
||||
}
|
||||
|
||||
|
||||
public PamSVGIcon create(URL path) throws Exception {
|
||||
|
||||
// System.out.println("Create icon start");
|
||||
|
||||
@ -145,7 +151,7 @@ public class PamSVGIcon {
|
||||
|
||||
for (int ii=0; ii<map.getLength(); ii++) {
|
||||
String col;
|
||||
// System.out.println(map.item(ii).getNodeName() + " " + map.item(ii).getFirstChild().getNodeValue());
|
||||
//System.out.println(map.item(ii).getNodeName() + " " + map.item(ii).getFirstChild().getNodeValue());
|
||||
switch (map.item(ii).getNodeName()) {
|
||||
|
||||
case "fill":
|
||||
|
||||
@ -156,7 +156,9 @@ public class PlotPane extends PamBorderPane {
|
||||
|
||||
//create the plot pane.
|
||||
canvasHolder=new PamBorderPane();
|
||||
|
||||
canvasHolder.setMaxWidth(4000);
|
||||
canvasHolder.setMaxHeight(4000);
|
||||
|
||||
canvas = new Canvas(50, 50);
|
||||
canvas.heightProperty().bind(canvasHolder.heightProperty());
|
||||
canvas.widthProperty().bind(canvasHolder.widthProperty());
|
||||
|
||||
@ -35,6 +35,7 @@ import rawDeepLearningClassifier.dlClassification.DLClassifierChooser;
|
||||
import rawDeepLearningClassifier.dlClassification.DLClassifyProcess;
|
||||
import rawDeepLearningClassifier.dlClassification.animalSpot.SoundSpotClassifier;
|
||||
import rawDeepLearningClassifier.dlClassification.archiveModel.PamZipModelClassifier;
|
||||
import rawDeepLearningClassifier.dlClassification.delphinID.DelphinIDClassifier;
|
||||
import rawDeepLearningClassifier.dlClassification.genericModel.GenericDLClassifier;
|
||||
import rawDeepLearningClassifier.dlClassification.ketos.KetosClassifier2;
|
||||
import rawDeepLearningClassifier.dlClassification.koogu.KooguClassifier;
|
||||
@ -257,6 +258,7 @@ public class DLControl extends PamControlledUnit implements PamSettings {
|
||||
dlModels.add(new KetosClassifier2(this));
|
||||
dlModels.add(new KooguClassifier(this));
|
||||
dlModels.add(new PamZipModelClassifier(this));
|
||||
dlModels.add(new DelphinIDClassifier(this));
|
||||
|
||||
//it is important the Generic Model is last because we need to check
|
||||
//for PG metadata in all other models before resorting to manually
|
||||
|
||||
@ -10,6 +10,7 @@ import org.jamdev.jdl4pam.transforms.SimpleTransform;
|
||||
import org.jamdev.jdl4pam.transforms.SimpleTransformParams;
|
||||
|
||||
import PamguardMVC.PamDataUnit;
|
||||
import javafx.scene.Node;
|
||||
import rawDeepLearningClassifier.DLControl;
|
||||
import rawDeepLearningClassifier.DLStatus;
|
||||
import rawDeepLearningClassifier.layoutFX.DLCLassiferModelUI;
|
||||
@ -127,6 +128,7 @@ public interface DLClassiferModel {
|
||||
return dlTransformParams;
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -59,10 +59,10 @@ public class DLClassifierChooser {
|
||||
String frameworkString = frameworkObject.getString("framework");
|
||||
|
||||
for (DLClassiferModel model: dlControl.getDLModels()) {
|
||||
//System.out.println("frameworkString: " + frameworkString + " " + model.getName());
|
||||
System.out.println("frameworkString: " + frameworkString + " " + model.getName());
|
||||
if (model.getName().toLowerCase().equals(frameworkString.trim().toLowerCase())) return model;
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
else {
|
||||
System.err.println("DLClassifierChooser: Unable to extract the metadata file even though it exists in the zip archive:??");
|
||||
@ -86,7 +86,7 @@ public class DLClassifierChooser {
|
||||
if (model.isModelType(modelURI)) return model;
|
||||
}
|
||||
|
||||
//return the generic model.
|
||||
//return the generic model as default
|
||||
return dlControl.getDLModels().get(dlControl.getDLModels().size()-1);
|
||||
}
|
||||
|
||||
|
||||
@ -72,7 +72,8 @@ public abstract class StandardClassifierModel implements DLClassiferModel, PamSe
|
||||
*/
|
||||
if ((PamCalendar.isSoundFile() && !forceQueue) || dlControl.isViewer()) {
|
||||
//run the model
|
||||
ArrayList<GenericPrediction> modelResult = getDLWorker().runModel(groupedRawData,
|
||||
@SuppressWarnings("unchecked")
|
||||
ArrayList<GenericPrediction> modelResult = (ArrayList<GenericPrediction>) getDLWorker().runModel(groupedRawData,
|
||||
groupedRawData.get(0).getParentDataBlock().getSampleRate(), 0);
|
||||
|
||||
if (modelResult==null) {
|
||||
@ -134,7 +135,7 @@ public abstract class StandardClassifierModel implements DLClassiferModel, PamSe
|
||||
* Get the sound spot worker.
|
||||
* @return the sound spot worker.
|
||||
*/
|
||||
public abstract DLModelWorker<GenericPrediction> getDLWorker();
|
||||
public abstract DLModelWorker<? extends PredictionResult> getDLWorker();
|
||||
|
||||
/**
|
||||
* Get the sound spot worker.
|
||||
|
||||
@ -6,6 +6,7 @@ import java.util.List;
|
||||
import javax.swing.JPanel;
|
||||
|
||||
import PamController.SettingsPane;
|
||||
import javafx.scene.Node;
|
||||
import javafx.stage.FileChooser.ExtensionFilter;
|
||||
import rawDeepLearningClassifier.layoutFX.DLCLassiferModelUI;
|
||||
|
||||
@ -83,4 +84,10 @@ public class SoundSpotUI implements DLCLassiferModelUI {
|
||||
return extensionFilters;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Node getIcon() {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@ -128,11 +128,20 @@ public abstract class StandardModelPane extends SettingsPane<StandardModelParams
|
||||
private PamBorderPane createPane() {
|
||||
PamBorderPane mainPane = new PamBorderPane();
|
||||
|
||||
|
||||
Label classiferInfoLabel = new Label(dlClassifierModel.getName() + " Classifier");
|
||||
//PamGuiManagerFX.titleFont2style(classiferInfoLabel);
|
||||
//font to use for title labels.
|
||||
Font font= Font.font(null, FontWeight.BOLD, 11);
|
||||
classiferInfoLabel.setFont(font);
|
||||
|
||||
Node classifierIcon;
|
||||
if (dlClassifierModel.getModelUI()!=null && dlClassifierModel.getModelUI().getIcon()!=null) {
|
||||
classifierIcon = dlClassifierModel.getModelUI().getIcon();
|
||||
}
|
||||
else {
|
||||
Label classiferInfoLabel = new Label(dlClassifierModel.getName() + " Classifier");
|
||||
//PamGuiManagerFX.titleFont2style(classiferInfoLabel);
|
||||
classiferInfoLabel.setFont(font);
|
||||
classifierIcon=classiferInfoLabel;
|
||||
}
|
||||
|
||||
|
||||
// PamButton advButton = new PamButton("", PamGlyphDude.createPamGlyph(MaterialDesignIcon.SETTINGS, PamGuiManagerFX.iconSize));
|
||||
PamButton advButton = new PamButton("", PamGlyphDude.createPamIcon("mdi2c-cog", PamGuiManagerFX.iconSize));
|
||||
@ -238,7 +247,7 @@ public abstract class StandardModelPane extends SettingsPane<StandardModelParams
|
||||
|
||||
vBoxHolder = new PamVBox();
|
||||
vBoxHolder.setSpacing(5);
|
||||
vBoxHolder.getChildren().addAll(classiferInfoLabel, advSettings, classiferInfoLabel2, gridPane);
|
||||
vBoxHolder.getChildren().addAll(classifierIcon, advSettings, classiferInfoLabel2, gridPane);
|
||||
|
||||
mainPane.setCenter(vBoxHolder);
|
||||
|
||||
@ -322,7 +331,7 @@ public abstract class StandardModelPane extends SettingsPane<StandardModelParams
|
||||
|
||||
if (currentSelectedFile==null) {
|
||||
//uuurgh need to sort this out with FX stuff
|
||||
WarnOnce.showWarningFX(null, "No Model File", "There is no model file selected in the path: Please select a compatible model" , AlertType.ERROR);
|
||||
WarnOnce.showWarningFX(null, "No Model File", "There is no model file selected in the path: Please select a compatible model" , AlertType.ERROR);
|
||||
|
||||
}
|
||||
else {
|
||||
|
||||
@ -138,9 +138,7 @@ public abstract class ArchiveModelClassifier extends StandardClassifierModel {
|
||||
ArrayList<DLTransfromParams> dlTransformParams = DLClassiferModel.getDLTransformParams(standardDLParams.dlTransfroms);
|
||||
|
||||
standardDLParams.dlTransfromParams=dlTransformParams;
|
||||
|
||||
// System.out.println("KetosParams have been saved. : " + standardDLParams.dlTransfromParams);
|
||||
|
||||
return standardDLParams;
|
||||
}
|
||||
|
||||
@ -161,8 +159,10 @@ public abstract class ArchiveModelClassifier extends StandardClassifierModel {
|
||||
standardDLParams.dlTransfroms = DLTransformsFactory
|
||||
.makeDLTransforms((ArrayList<DLTransfromParams>) standardDLParams.dlTransfromParams);
|
||||
}
|
||||
} else
|
||||
}
|
||||
else {
|
||||
standardDLParams = makeParams();
|
||||
}
|
||||
return true;
|
||||
}
|
||||
|
||||
|
||||
@ -6,6 +6,7 @@ import java.util.List;
|
||||
import javax.swing.JPanel;
|
||||
|
||||
import PamController.SettingsPane;
|
||||
import javafx.scene.Node;
|
||||
import javafx.stage.FileChooser.ExtensionFilter;
|
||||
import rawDeepLearningClassifier.dlClassification.animalSpot.StandardModelPane;
|
||||
import rawDeepLearningClassifier.dlClassification.animalSpot.StandardModelParams;
|
||||
@ -90,6 +91,12 @@ public class ArchiveModelUI implements DLCLassiferModelUI {
|
||||
this.extensionFilters = extensionFilters;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Node getIcon() {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
}
|
||||
|
||||
|
||||
|
||||
}
|
||||
@ -229,9 +229,9 @@ public class ArchiveModelWorker extends GenericModelWorker {
|
||||
|
||||
@Override
|
||||
public GenericPrediction makeModelResult(float[] prob, double time) {
|
||||
GenericPrediction soundSpotResult = new GenericPrediction(prob);
|
||||
soundSpotResult.setAnalysisTime(time);
|
||||
return soundSpotResult;
|
||||
GenericPrediction prediction = new GenericPrediction(prob);
|
||||
prediction.setAnalysisTime(time);
|
||||
return prediction;
|
||||
}
|
||||
|
||||
|
||||
|
||||
@ -4,18 +4,14 @@ import java.io.Serializable;
|
||||
import java.net.URI;
|
||||
import java.util.ArrayList;
|
||||
|
||||
import org.jamdev.jdl4pam.transforms.DLTransformsFactory;
|
||||
import org.jamdev.jdl4pam.transforms.DLTransfromParams;
|
||||
|
||||
import PamController.PamControlledUnitSettings;
|
||||
import PamController.PamSettings;
|
||||
import PamguardMVC.PamDataUnit;
|
||||
import rawDeepLearningClassifier.DLControl;
|
||||
import rawDeepLearningClassifier.DLStatus;
|
||||
import rawDeepLearningClassifier.dlClassification.DLClassName;
|
||||
import rawDeepLearningClassifier.dlClassification.DLClassiferModel;
|
||||
import rawDeepLearningClassifier.dlClassification.PredictionResult;
|
||||
import rawDeepLearningClassifier.dlClassification.StandardClassifierModel;
|
||||
import rawDeepLearningClassifier.dlClassification.animalSpot.StandardModelParams;
|
||||
import rawDeepLearningClassifier.dlClassification.archiveModel.ArchiveModelClassifier;
|
||||
import rawDeepLearningClassifier.dlClassification.archiveModel.ArchiveModelWorker;
|
||||
import rawDeepLearningClassifier.dlClassification.genericModel.DLModelWorker;
|
||||
import rawDeepLearningClassifier.dlClassification.genericModel.GenericPrediction;
|
||||
import rawDeepLearningClassifier.layoutFX.DLCLassiferModelUI;
|
||||
@ -28,76 +24,108 @@ import rawDeepLearningClassifier.layoutFX.DLCLassiferModelUI;
|
||||
*
|
||||
*/
|
||||
public class DelphinIDClassifier extends StandardClassifierModel {
|
||||
|
||||
|
||||
private DelphinIDParams delphinIDParams = new DelphinIDParams();
|
||||
|
||||
|
||||
private DelphinUI delphinUI;
|
||||
|
||||
|
||||
private DelphinIDWorker delphinIDWorker;
|
||||
|
||||
|
||||
public DelphinIDClassifier(DLControl dlControl) {
|
||||
super(dlControl);
|
||||
// TODO Auto-generated constructor stub
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean isModelType(URI model) {
|
||||
// TODO Auto-generated method stub
|
||||
return false;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String getName() {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
return "delphinID";
|
||||
}
|
||||
|
||||
@Override
|
||||
public DLCLassiferModelUI getModelUI() {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
if (delphinUI==null) {
|
||||
delphinUI = new DelphinUI(this);
|
||||
}
|
||||
return delphinUI;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Serializable getDLModelSettings() {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String getUnitType() {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Serializable getSettingsReference() {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public long getSettingsVersion() {
|
||||
// TODO Auto-generated method stub
|
||||
return 0;
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean restoreSettings(PamControlledUnitSettings pamControlledUnitSettings) {
|
||||
// TODO Auto-generated method stub
|
||||
return false;
|
||||
return delphinIDParams;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String getUnitName() {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
return dlControl.getUnitName()+"_" + getName();
|
||||
}
|
||||
|
||||
@Override
|
||||
public String getUnitType() {
|
||||
return dlControl.getUnitType()+"_" + getName();
|
||||
}
|
||||
|
||||
@Override
|
||||
public Serializable getSettingsReference() {
|
||||
if (delphinIDParams==null) {
|
||||
delphinIDParams = new DelphinIDParams();
|
||||
}
|
||||
|
||||
ArrayList<DLTransfromParams> dlTransformParams = DLClassiferModel.getDLTransformParams(delphinIDParams.dlTransfroms);
|
||||
|
||||
delphinIDParams.dlTransfromParams=dlTransformParams;
|
||||
|
||||
//System.out.println("SoundSpot have been saved. : " + soundSpotParmas.classNames);
|
||||
return delphinIDParams;
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Override
|
||||
public long getSettingsVersion() {
|
||||
return StandardModelParams.serialVersionUID;
|
||||
}
|
||||
|
||||
|
||||
@Override
|
||||
public boolean restoreSettings(PamControlledUnitSettings pamControlledUnitSettings) {
|
||||
DelphinIDParams newParameters = (DelphinIDParams) pamControlledUnitSettings.getSettings();
|
||||
if (newParameters!=null) {
|
||||
delphinIDParams = (DelphinIDParams) newParameters.clone();
|
||||
//System.out.println("SoundSpot have been restored. : " + soundSpotParmas.classNames);
|
||||
if (delphinIDParams.dlTransfromParams!=null) {
|
||||
delphinIDParams.dlTransfroms = DLTransformsFactory.makeDLTransforms((ArrayList<DLTransfromParams>) delphinIDParams.dlTransfromParams);
|
||||
}
|
||||
}
|
||||
else delphinIDParams = new DelphinIDParams();
|
||||
return true;
|
||||
}
|
||||
|
||||
|
||||
|
||||
@Override
|
||||
public DLModelWorker<GenericPrediction> getDLWorker() {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
if (delphinIDWorker==null) {
|
||||
delphinIDWorker = new DelphinIDWorker();
|
||||
}
|
||||
return delphinIDWorker;
|
||||
}
|
||||
|
||||
@Override
|
||||
public StandardModelParams getDLParams() {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
public DelphinIDParams getDLParams() {
|
||||
return delphinIDParams;
|
||||
}
|
||||
|
||||
public void setDLParams(DelphinIDParams params) {
|
||||
this.delphinIDParams=params;
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
@ -0,0 +1,88 @@
|
||||
package rawDeepLearningClassifier.dlClassification.delphinID;
|
||||
|
||||
import PamController.SettingsPane;
|
||||
import javafx.scene.Node;
|
||||
import javafx.scene.control.Label;
|
||||
import javafx.scene.control.Tooltip;
|
||||
import javafx.scene.layout.Pane;
|
||||
import javafx.scene.text.Font;
|
||||
import javafx.scene.text.FontWeight;
|
||||
import pamViewFX.fxNodes.PamVBox;
|
||||
|
||||
/**
|
||||
* Settings pane for delphin ID.
|
||||
*
|
||||
* @author Jamie Macaulay
|
||||
*
|
||||
*/
|
||||
public class DelphinIDPane extends SettingsPane<DelphinIDParams> {
|
||||
|
||||
/**
|
||||
* The main pane.
|
||||
*/
|
||||
private Pane mainPane;
|
||||
|
||||
/**
|
||||
* Reference to the delphinID classifier
|
||||
*/
|
||||
private DelphinIDClassifier delphinUIClassifier;
|
||||
|
||||
public DelphinIDPane(DelphinIDClassifier delphinUIClassifier) {
|
||||
super(null);
|
||||
this.delphinUIClassifier = delphinUIClassifier;
|
||||
mainPane = createPane();
|
||||
}
|
||||
|
||||
private Pane createPane() {
|
||||
|
||||
|
||||
//font to use for title labels.
|
||||
Font font= Font.font(null, FontWeight.BOLD, 11);
|
||||
|
||||
Node classifierIcon;
|
||||
classifierIcon = delphinUIClassifier.getModelUI().getIcon();
|
||||
|
||||
|
||||
PamVBox vBox = new PamVBox();
|
||||
vBox.setSpacing(5.);
|
||||
|
||||
/**Classification thresholds etc to set.**/
|
||||
Label classiferInfoLabel2 = new Label("Decision Threshold");
|
||||
classiferInfoLabel2.setTooltip(new Tooltip("Set the minimum prediciton value for selected classes. If a prediction exceeds this value "
|
||||
+ "a detection will be saved."));
|
||||
classiferInfoLabel2.setFont(font);
|
||||
|
||||
|
||||
vBox.getChildren().addAll(classifierIcon, classiferInfoLabel2);
|
||||
|
||||
return vBox;
|
||||
}
|
||||
|
||||
@Override
|
||||
public DelphinIDParams getParams(DelphinIDParams currParams) {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public void setParams(DelphinIDParams input) {
|
||||
// TODO Auto-generated method stub
|
||||
}
|
||||
|
||||
@Override
|
||||
public String getName() {
|
||||
return "delphinIDParams";
|
||||
}
|
||||
|
||||
@Override
|
||||
public Node getContentNode() {
|
||||
return mainPane;
|
||||
}
|
||||
|
||||
@Override
|
||||
public void paneInitialized() {
|
||||
// TODO Auto-generated method stub
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
@ -1,55 +1,74 @@
|
||||
package rawDeepLearningClassifier.dlClassification.delphinID;
|
||||
|
||||
|
||||
import java.util.ArrayList;
|
||||
|
||||
import org.jamdev.jdl4pam.transforms.DLTransform;
|
||||
import PamguardMVC.PamDataUnit;
|
||||
import rawDeepLearningClassifier.DLControl;
|
||||
import rawDeepLearningClassifier.dlClassification.animalSpot.StandardModelParams;
|
||||
import rawDeepLearningClassifier.dlClassification.genericModel.DLModelWorker;
|
||||
import rawDeepLearningClassifier.dlClassification.archiveModel.ArchiveModelWorker;
|
||||
import rawDeepLearningClassifier.segmenter.GroupedRawData;
|
||||
|
||||
public class DelphinIDWorker extends DLModelWorker<DelphinIDPrediction>{
|
||||
|
||||
@Override
|
||||
public float[] runModel(float[][][] transformedDataStack) {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
}
|
||||
public class DelphinIDWorker extends ArchiveModelWorker {
|
||||
|
||||
@Override
|
||||
public boolean isModelNull() {
|
||||
// TODO Auto-generated method stub
|
||||
return false;
|
||||
}
|
||||
|
||||
@Override
|
||||
public DelphinIDPrediction makeModelResult(float[] prob, double time) {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public void prepModel(StandardModelParams delphinIDParams, DLControl dlControl) {
|
||||
// TODO Auto-generated method stub
|
||||
}
|
||||
|
||||
@Override
|
||||
public void closeModel() {
|
||||
// TODO Auto-generated method stub
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Override
|
||||
public float[][][] dataUnits2ModelInput(ArrayList<? extends PamDataUnit> dataUnits, float sampleRate, int iChan){
|
||||
//Our data units are groups of whistles.
|
||||
|
||||
|
||||
|
||||
|
||||
return null;
|
||||
}
|
||||
ArrayList<DLTransform> modelTransforms = getModelTransforms();
|
||||
|
||||
|
||||
@SuppressWarnings("unchecked")
|
||||
ArrayList<GroupedRawData> whistleGroups = (ArrayList<GroupedRawData>) dataUnits;
|
||||
|
||||
//the number of chunks.
|
||||
int numChunks = whistleGroups.size();
|
||||
|
||||
//data input into the model - a stack of spectrogram images.
|
||||
float[][][] transformedDataStack = new float[numChunks][][];
|
||||
//
|
||||
// //generate the spectrogram stack.
|
||||
// AudioData soundData;
|
||||
// double[][] transformedData2; //spec data
|
||||
// double[] transformedData1; //waveform data
|
||||
// for (int j=0; j<numChunks; j++) {
|
||||
//
|
||||
// soundData = new AudioData(rawDataUnits.get(j).getRawData()[iChan], sampleRate);
|
||||
//
|
||||
// // for (int i=0; i<modelTransforms.size(); i++) {
|
||||
// // System.out.println("Transfrom type: " + modelTransforms.get(i).getDLTransformType());
|
||||
// // }
|
||||
// //set the sound in the first transform.
|
||||
// ((WaveTransform) modelTransforms.get(0)).setWaveData(soundData);
|
||||
//
|
||||
//// System.out.println("Model transforms:no. " + modelTransforms.size()+ " input sounds len: " + soundData.getLengthInSeconds()
|
||||
//// + " Decimate Params: " + ((WaveTransform) modelTransforms.get(0)).getParams()[0] + "max amplitude sound: " + PamArrayUtils.max(soundData.samples));
|
||||
//
|
||||
// DLTransform transform = modelTransforms.get(0);
|
||||
// for (int i =0; i<modelTransforms.size(); i++) {
|
||||
// transform = modelTransforms.get(i).transformData(transform);
|
||||
//// //TEMP
|
||||
//// if (transform instanceof FreqTransform) {
|
||||
//// transformedData = ((FreqTransform) transform).getSpecTransfrom().getTransformedData();
|
||||
//// System.out.println("DLModelWorker: transform : " + modelTransforms.get(i).getDLTransformType() + " "+ i + transformedData.length + " " + transformedData[0].length + " minmax: " + PamArrayUtils.minmax(transformedData)[0] + " " + PamArrayUtils.minmax(transformedData)[1]);
|
||||
//// }
|
||||
// }
|
||||
//
|
||||
// if (transform instanceof FreqTransform) {
|
||||
// //add a spectrogram to the stacl
|
||||
// transformedData2 = ((FreqTransform) transform).getSpecTransfrom().getTransformedData();
|
||||
// transformedDataStack[j] = DLUtils.toFloatArray(transformedData2);
|
||||
// }
|
||||
// else {
|
||||
// //add wavefrom to the stack = we make the 2nd dimesnion 1.
|
||||
// transformedData1 = ((WaveTransform) transform).getWaveData().getScaledSampleAmplitudes();
|
||||
// transformedDataStack[j] = new float[1][transformedData1.length];
|
||||
// transformedDataStack[j][0] = DLUtils.toFloatArray(transformedData1);
|
||||
// }
|
||||
// }
|
||||
|
||||
|
||||
return transformedDataStack;
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
|
||||
@ -0,0 +1,106 @@
|
||||
package rawDeepLearningClassifier.dlClassification.delphinID;
|
||||
|
||||
import java.net.MalformedURLException;
|
||||
import java.net.URISyntaxException;
|
||||
import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
|
||||
import javax.swing.JPanel;
|
||||
|
||||
import PamController.SettingsPane;
|
||||
import javafx.scene.Node;
|
||||
import javafx.stage.FileChooser.ExtensionFilter;
|
||||
import pamViewFX.fxGlyphs.PamSVGIcon;
|
||||
import rawDeepLearningClassifier.layoutFX.DLCLassiferModelUI;
|
||||
|
||||
/**
|
||||
* DelphinID user interface components.
|
||||
*
|
||||
* @author Jamie Macaulay
|
||||
*
|
||||
*/
|
||||
public class DelphinUI implements DLCLassiferModelUI {
|
||||
|
||||
/**
|
||||
* The icon.
|
||||
*/
|
||||
private Node icon;
|
||||
|
||||
/**
|
||||
* Reference to the delphinID classifier.
|
||||
*/
|
||||
private DelphinIDClassifier delphinUIClassifier;
|
||||
|
||||
/**
|
||||
* The delphinID settings pane.
|
||||
*/
|
||||
private DelphinIDPane delphinIDSettings;
|
||||
|
||||
/**
|
||||
* List of extension filters for this type of model.
|
||||
*/
|
||||
private ArrayList<ExtensionFilter> extensionFilters;
|
||||
|
||||
public DelphinUI(DelphinIDClassifier delphinUIClassifier) {
|
||||
this.delphinUIClassifier=delphinUIClassifier;
|
||||
extensionFilters = new ArrayList<ExtensionFilter>();
|
||||
//import the settings holder
|
||||
extensionFilters.add(new ExtensionFilter("Zip Model", "*.zip"));
|
||||
}
|
||||
|
||||
@Override
|
||||
public SettingsPane<DelphinIDParams> getSettingsPane() {
|
||||
if (delphinIDSettings==null) {
|
||||
delphinIDSettings = new DelphinIDPane(delphinUIClassifier);
|
||||
}
|
||||
return delphinIDSettings;
|
||||
}
|
||||
|
||||
@Override
|
||||
public void getParams() {
|
||||
DelphinIDParams params = getSettingsPane().getParams(delphinUIClassifier.getDLParams());
|
||||
delphinUIClassifier.setDLParams(params);
|
||||
}
|
||||
|
||||
|
||||
@Override
|
||||
public void setParams() {
|
||||
// System.out.println("Set model params: " + genericModelClassifier.getGenericDLParams().dlTransfromParams.size());
|
||||
getSettingsPane().setParams(delphinUIClassifier.getDLParams());
|
||||
}
|
||||
|
||||
@Override
|
||||
public List<ExtensionFilter> getModelFileExtensions() {
|
||||
//this is a bit redundant because zip files
|
||||
return extensionFilters;
|
||||
}
|
||||
|
||||
@Override
|
||||
public JPanel getSidePanel() {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Node getIcon() {
|
||||
if (icon==null) {
|
||||
PamSVGIcon iconMaker= new PamSVGIcon();
|
||||
PamSVGIcon svgsprite;
|
||||
try {
|
||||
svgsprite = iconMaker.create(getClass().getResource("/Resources/delphinid_logo01.svg").toURI().toURL());
|
||||
icon = svgsprite.getSpriteNode();
|
||||
} catch (MalformedURLException e) {
|
||||
// TODO Auto-generated catch block
|
||||
e.printStackTrace();
|
||||
} catch (URISyntaxException e) {
|
||||
// TODO Auto-generated catch block
|
||||
e.printStackTrace();
|
||||
} catch (Exception e) {
|
||||
// TODO Auto-generated catch block
|
||||
e.printStackTrace();
|
||||
}
|
||||
}
|
||||
return icon;
|
||||
}
|
||||
|
||||
}
|
||||
@ -9,6 +9,7 @@ import PamController.SettingsPane;
|
||||
import PamView.dialog.warn.WarnOnce;
|
||||
import PamView.dialog.warn.WarnOnceDialog;
|
||||
import javafx.application.Platform;
|
||||
import javafx.scene.Node;
|
||||
import javafx.scene.control.Alert.AlertType;
|
||||
import javafx.stage.FileChooser.ExtensionFilter;
|
||||
import rawDeepLearningClassifier.dlClassification.animalSpot.StandardModelParams;
|
||||
@ -88,4 +89,10 @@ public class GenericModelUI implements DLCLassiferModelUI {
|
||||
public List<ExtensionFilter> getModelFileExtensions() {
|
||||
return extensionFilters;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Node getIcon() {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
}
|
||||
}
|
||||
|
||||
@ -6,6 +6,7 @@ import java.util.List;
|
||||
import javax.swing.JPanel;
|
||||
|
||||
import PamController.SettingsPane;
|
||||
import javafx.scene.Node;
|
||||
import javafx.stage.FileChooser.ExtensionFilter;
|
||||
import rawDeepLearningClassifier.dlClassification.animalSpot.StandardModelParams;
|
||||
import rawDeepLearningClassifier.layoutFX.DLCLassiferModelUI;
|
||||
@ -76,6 +77,12 @@ public class KetosUI implements DLCLassiferModelUI {
|
||||
return extensionFilters;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Node getIcon() {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
}
|
||||
|
||||
|
||||
|
||||
}
|
||||
@ -5,6 +5,7 @@ import java.util.List;
|
||||
import javax.swing.SwingUtilities;
|
||||
|
||||
import PamController.SettingsPane;
|
||||
import javafx.scene.Node;
|
||||
import javafx.stage.FileChooser.ExtensionFilter;
|
||||
import rawDeepLearningClassifier.layoutFX.DLCLassiferModelUI;
|
||||
|
||||
@ -79,4 +80,10 @@ public class OrcaSpotClassifierUI implements DLCLassiferModelUI {
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Node getIcon() {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@ -3,6 +3,8 @@ package rawDeepLearningClassifier.layoutFX;
|
||||
import java.util.List;
|
||||
|
||||
import javax.swing.JPanel;
|
||||
|
||||
import javafx.scene.Node;
|
||||
import javafx.stage.FileChooser.ExtensionFilter;
|
||||
import PamController.SettingsPane;
|
||||
|
||||
@ -42,5 +44,12 @@ public interface DLCLassiferModelUI {
|
||||
*/
|
||||
public JPanel getSidePanel();
|
||||
|
||||
/**
|
||||
* Get an icon for the model. Note that this can be null in
|
||||
* which case the icon in the UI will be a label with the mdoel name.
|
||||
* @return teh model icon.
|
||||
*/
|
||||
public Node getIcon();
|
||||
|
||||
|
||||
}
|
||||
|
||||
@ -380,9 +380,11 @@ public class DLSettingsPane extends SettingsPane<RawDLParams>{
|
||||
* Set the classifier pane.
|
||||
*/
|
||||
protected void setClassifierPane() {
|
||||
|
||||
|
||||
//set the classifier Pane.class
|
||||
if (modelSelectPane.currentClassifierModel!=null && modelSelectPane.currentClassifierModel.getModelUI()!=null) {
|
||||
|
||||
|
||||
classifierPane.setCenter(modelSelectPane.currentClassifierModel.getModelUI().getSettingsPane().getContentNode());
|
||||
|
||||
if (modelSelectPane.currentClassifierModel!=null) {
|
||||
|
||||
Loading…
Reference in New Issue
Block a user