* Ishmael Tethys output
Added necessaries for Tethys output from Ishmael detectors. Also found a pretty major bug in the spectrogram correlation detector, where for each block of data it was only testing the first sample of each block, not all samples, for being over threshold.
* Speed and algorithm improvements to Ish matched filter
Seems to be errors in correlation, didn't support multiple channels and
also used very old and slow FFT, so working to fix all three issues.
* Updated matched filter
Updated and working Matched filter, though still some thinking to do about how the scaling of this works, since currently scaled by the template, so whole thing is dependent on the input. Need to think of a better way to do this.
* Update match filt normalisation
Normalisation now correctly using both the template and the signal for normalisation so that it will be data amplitude independent.
* invFFT improvements
Use faster inverse FFT of real data in correlation / delay functions.
* Improve ifft's in other modules to improve TDOA speeds
* Sorting mess of spec plugin graphics
Have got the Ishmael ones scrolling, but when scrolling, there is an offset in the data due to the lag of the correlation functions. Quite hard to fix with available timing data
* Improve ish spectrogram plugin
Sorted scaling and scrollling problems.
commit c64fa8fe9d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Mar 7 11:24:20 2024 +0000
opt to easily turn off restart debug output
commit 48c5387291
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Mar 7 09:22:45 2024 +0000
binary store count (#129)
Fix issue in binary store object count
commit 769193703a
Merge: 308442f223062c3f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Mar 7 09:16:45 2024 +0000
Merge branch 'restart' into main
commit 308442f201
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Mar 7 09:14:33 2024 +0000
Merge from dg dev main (#128)
* updating Tethys help
* added help details server connection & calibration
* Reporting outputs to user
Use Pamguard WarnOnce system to show a message of success or failure
after attempting to output to Tethys.
* Removing empty fields
Start of implementation of code that can remove empty fields from
objects before they are written.
* More help documentation
Continued writing general export help.
Added new css style
Added image
* Fix type in Deployment export
* Prevent single deployment export
For now, disable the option to export a single Deployment document for
multiple recording periods.
* System to search species codes
Search the ITIS species codes in Tethys to find ITIS codes. Search can
be on a common or scientific name.
* Data blocks help + species codes
More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs. Includes supporting images
* Improved dialog for finding species codes
Now has a progress bar to block GUI while searching database.
* Add species codes TOC in help
* Documented new species search in help
* Nilus Checker
Can check a Nilus class to see if it's missing required objects and be
used to remove empty fields (e.g. zero length strings) from an object.
* fixed anchor html problem
* Messing around with checking of required fields in nilus objects.
* split Tethys help files into smaller chunks
* Update button enablers
And reinstate output of a single deployment document, with non-recording
periods stores in the QA section
And update help TOC for latest help documents.
---------
Co-authored-by: Marie <marie.roch@sdsu.edu>
commit 23062c3ff4
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Mar 4 13:59:09 2024 +0000
Update PamController.java
add in debug output at start and stop
commit 85b47c86af
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Mar 4 13:05:56 2024 +0000
exception handling
A bit more exception handling in click train detector and output of a version 10aa/other
commit e3ffd56f69
Merge: 1200b13fe6c2f325
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Mar 4 12:28:42 2024 +0000
Merge branch 'restart' of https://github.com/douggillespie/PAMGuard into restart
commit e6c2f325b2
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat Mar 2 10:43:41 2024 +0000
Binary store
Fix err in binary footer where count of objects also included the count
of noise measurements.
commit 45b99273fa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Feb 27 19:09:58 2024 +0000
Restore single param call into PamParameterSet.autoGenerate
commit c36ad2a33a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Feb 27 15:55:02 2024 +0000
Fix settings load.
Problems in viewer mode with long (>50char) settings names which don't
get fully stored in the database. Fixed by only looking at the start of
the name. Better to not use such long names.
commit 2721095a03
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Feb 27 14:08:22 2024 +0000
Fix compound data selector V2.02.10b
also a bug in logger forms if malformed UDF's
commit 1200b13f95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Feb 23 15:53:00 2024 +0000
Exception handling in CTD
commit 156952bafe
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Feb 22 17:40:45 2024 +0000
Update MHTClickTrainAlgorithm.java
Synchronize calls into MHT Algorithm across threads (can mess up during restarts otherwise)
commit e491028ef7
Merge: d2263bbb21b4bc13
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Feb 15 16:52:29 2024 +0000
Merge pull request #66 from PAMGuard/main
merge from main
commit d2263bbba5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Feb 15 16:48:33 2024 +0000
Functions for better restarting after buffer overflow.
commit 21b4bc130d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Feb 9 11:53:35 2024 +0000
Hydrophone data loading
Change how hydrophone data are loaded in viewer. Don't load ALL data.
Load the loading period + some before the load period which will be one
minute of data PLUS an extra n*2 data before that extra minute where n
is the number of hydrophones.
commit e52701353a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Feb 5 13:34:15 2024 +0000
Fix data integrity bug
Fix of bug that 'fixed' event start and end times in database for linked
parent / child event tables. Error was caused by a mix up between
ParentID and ParentUID fields.
commit 66b73c45e2
Merge: 0dc47fcb9fe8e353
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Feb 2 09:08:19 2024 +0000
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main
commit 0dc47fcb0b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Feb 2 09:07:55 2024 +0000
click display arrangement
Added options to NOT automatically rearrange all the windows in the
click display every time the display size changes
commit 9609546602
Merge: 82e02a2167e58416
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jan 30 15:01:04 2024 +0000
Merge pull request #65 from douggillespie/Tethys
Tethys
commit 67e5841668
Merge: 6b1845299fe8e353
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jan 30 15:00:00 2024 +0000
Merge pull request #64 from PAMGuard/main
Merge from main
commit 9fe8e35322
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jan 30 14:58:50 2024 +0000
MErge from dg (#127)
* updating Tethys help
* added help details server connection & calibration
* Reporting outputs to user
Use Pamguard WarnOnce system to show a message of success or failure
after attempting to output to Tethys.
* Removing empty fields
Start of implementation of code that can remove empty fields from
objects before they are written.
* More help documentation
Continued writing general export help.
Added new css style
Added image
* Fix type in Deployment export
* Prevent single deployment export
For now, disable the option to export a single Deployment document for
multiple recording periods.
* System to search species codes
Search the ITIS species codes in Tethys to find ITIS codes. Search can
be on a common or scientific name.
* Data blocks help + species codes
More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs. Includes supporting images
* Improved dialog for finding species codes
Now has a progress bar to block GUI while searching database.
* Add species codes TOC in help
* Documented new species search in help
* Nilus Checker
Can check a Nilus class to see if it's missing required objects and be
used to remove empty fields (e.g. zero length strings) from an object.
* fixed anchor html problem
* Messing around with checking of required fields in nilus objects.
* split Tethys help files into smaller chunks
* Update button enablers
And reinstate output of a single deployment document, with non-recording
periods stores in the QA section
And update help TOC for latest help documents.
---------
Co-authored-by: Marie <marie.roch@sdsu.edu>
commit 1c532906ca
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jan 30 14:57:38 2024 +0000
Merge from dg (#126)
* updating Tethys help
* added help details server connection & calibration
* Reporting outputs to user
Use Pamguard WarnOnce system to show a message of success or failure
after attempting to output to Tethys.
* Removing empty fields
Start of implementation of code that can remove empty fields from
objects before they are written.
* More help documentation
Continued writing general export help.
Added new css style
Added image
* Fix type in Deployment export
* Prevent single deployment export
For now, disable the option to export a single Deployment document for
multiple recording periods.
* System to search species codes
Search the ITIS species codes in Tethys to find ITIS codes. Search can
be on a common or scientific name.
* Data blocks help + species codes
More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs. Includes supporting images
* Improved dialog for finding species codes
Now has a progress bar to block GUI while searching database.
* Add species codes TOC in help
* Documented new species search in help
* Nilus Checker
Can check a Nilus class to see if it's missing required objects and be
used to remove empty fields (e.g. zero length strings) from an object.
* fixed anchor html problem
* Messing around with checking of required fields in nilus objects.
* split Tethys help files into smaller chunks
* Update button enablers
And reinstate output of a single deployment document, with non-recording
periods stores in the QA section
And update help TOC for latest help documents.
---------
Co-authored-by: Marie <marie.roch@sdsu.edu>
commit 82e02a21b3
Merge: 8b57a398c4192a73
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jan 30 14:56:43 2024 +0000
Merge pull request #63 from PAMGuard/main
MErge from main
commit c4192a7323
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jan 30 14:51:29 2024 +0000
Version 2.02.10
final commit of updated version info for release
commit 5466914d4e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jan 30 11:55:34 2024 +0000
Merge from dev branch (#125)
* updating Tethys help
* added help details server connection & calibration
* Reporting outputs to user
Use Pamguard WarnOnce system to show a message of success or failure
after attempting to output to Tethys.
* Removing empty fields
Start of implementation of code that can remove empty fields from
objects before they are written.
* More help documentation
Continued writing general export help.
Added new css style
Added image
* Fix type in Deployment export
* Prevent single deployment export
For now, disable the option to export a single Deployment document for
multiple recording periods.
* System to search species codes
Search the ITIS species codes in Tethys to find ITIS codes. Search can
be on a common or scientific name.
* Data blocks help + species codes
More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs. Includes supporting images
* Improved dialog for finding species codes
Now has a progress bar to block GUI while searching database.
* Add species codes TOC in help
* Documented new species search in help
* Nilus Checker
Can check a Nilus class to see if it's missing required objects and be
used to remove empty fields (e.g. zero length strings) from an object.
* fixed anchor html problem
* Messing around with checking of required fields in nilus objects.
* split Tethys help files into smaller chunks
* Update button enablers
And reinstate output of a single deployment document, with non-recording
periods stores in the QA section
And update help TOC for latest help documents.
---------
Co-authored-by: Marie <marie.roch@sdsu.edu>
commit 8b57a3982a
Merge: f4993425cb0d191c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jan 30 11:54:17 2024 +0000
Merge pull request #62 from PAMGuard/main
Update README.html
commit f4993425b5
Merge: dacfab076b184529
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jan 30 11:52:32 2024 +0000
Merge pull request #61 from douggillespie/Tethys
TethysMerge in from Tetthys
commit cb0d191c08
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Jan 29 20:50:07 2024 +0000
Update README.html
Fix problems of weird characters in readme.html
commit 6b1845293c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Jan 29 16:54:24 2024 +0000
Update button enablers
And reinstate output of a single deployment document, with non-recording
periods stores in the QA section
And update help TOC for latest help documents.
commit 810ec67077
Author: Marie <marie.roch@sdsu.edu>
Date: Fri Jan 26 19:56:45 2024 -0800
split Tethys help files into smaller chunks
commit dacfab07f5
Merge: a6765d7253ca798f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 26 10:02:00 2024 +0000
Merge pull request #60 from PAMGuard/main
Correct sorting of input sound files
commit 53ca798f1b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 26 09:57:57 2024 +0000
Correct sorting of input sound files
commit 88be6ffe2e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Jan 25 18:04:57 2024 +0000
Messing around with checking of required fields in nilus objects.
commit fe33930ca8
Author: Marie <marie.roch@sdsu.edu>
Date: Wed Jan 24 11:50:20 2024 -0800
fixed anchor html problem
commit fdfa9a20d8
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Jan 24 16:32:30 2024 +0000
Nilus Checker
Can check a Nilus class to see if it's missing required objects and be
used to remove empty fields (e.g. zero length strings) from an object.
commit b78bbe8b9e
Merge: c0080ae4a6765d72
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Jan 24 14:50:22 2024 +0000
Merge pull request #59 from douggillespie/main
merge from main
commit a6765d72b1
Merge: efdf17f65fcd3607
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Jan 24 14:46:39 2024 +0000
Merge pull request #58 from PAMGuard/main
Remove comments in split positioner
commit 5fcd360737
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Jan 24 14:46:05 2024 +0000
Remove comments in split positioner
commit c0080ae4f4
Merge: f1bb6e4cefdf17f6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Jan 24 14:37:24 2024 +0000
Merge remote-tracking branch 'origin/main' into Tethys
Conflicts:
src/help/JavaHelpSearch/DOCS
src/help/JavaHelpSearch/DOCS.TAB
src/help/JavaHelpSearch/OFFSETS
src/help/JavaHelpSearch/POSITIONS
src/help/JavaHelpSearch/SCHEMA
src/help/JavaHelpSearch/TMAP
src/help/utilities/tethys/docs/tethys_quickstart.html
commit f1bb6e4c0c
Author: Marie <marie.roch@sdsu.edu>
Date: Tue Jan 23 14:33:50 2024 -0800
Documented new species search in help
commit 971165b72e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Jan 23 11:12:54 2024 +0000
Add species codes TOC in help
commit 3d7224eb93
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Jan 22 18:04:57 2024 +0000
Improved dialog for finding species codes
Now has a progress bar to block GUI while searching database.
commit 7d30b303e7
Author: Marie <marie.roch@sdsu.edu>
Date: Sun Jan 21 15:24:13 2024 -0800
Data blocks help + species codes
More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs. Includes supporting images
commit baff8d140c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Jan 21 21:35:34 2024 +0000
System to search species codes
Search the ITIS species codes in Tethys to find ITIS codes. Search can
be on a common or scientific name.
commit 54cb0d1b08
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Jan 21 17:01:10 2024 +0000
Prevent single deployment export
For now, disable the option to export a single Deployment document for
multiple recording periods.
commit 522253b489
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Jan 21 16:25:03 2024 +0000
Fix type in Deployment export
commit 98bc7587b5
Merge: c8bc943fe0392de9
Author: Marie <marie.roch@sdsu.edu>
Date: Sat Jan 20 20:01:19 2024 -0800
Merge branch 'Tethys' of https://github.com/douggillespie/PAMGuard into Tethys
commit c8bc943ff7
Author: Marie <marie.roch@sdsu.edu>
Date: Sat Jan 20 20:01:05 2024 -0800
More help documentation
Continued writing general export help.
Added new css style
Added image
commit e0392de9c7
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 19 17:29:12 2024 +0000
Removing empty fields
Start of implementation of code that can remove empty fields from
objects before they are written.
commit 65300d719a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 19 16:29:41 2024 +0000
Reporting outputs to user
Use Pamguard WarnOnce system to show a message of success or failure
after attempting to output to Tethys.
commit fa02c9826c
Merge: 3f2e42397efc8242
Author: Marie <marie.roch@sdsu.edu>
Date: Thu Jan 18 19:37:29 2024 -0800
Merge branch 'Tethys' of https://github.com/douggillespie/PAMGuard into Tethys
commit 3f2e4239b0
Author: Marie <marie.roch@sdsu.edu>
Date: Thu Jan 18 19:37:17 2024 -0800
added help details server connection & calibration
commit efdf17f651
Merge: 02f1889ee5fda7f7
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Jan 18 09:39:55 2024 +0000
Merge pull request #57 from PAMGuard/main
merge from main
commit e5fda7f72a
Merge: 3ed9be4b02f1889e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Jan 18 09:39:45 2024 +0000
Merge branch 'main' into main
commit 3ed9be4bfd
Merge: 42b7296043811c1f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Jan 18 09:36:56 2024 +0000
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into
main
commit 42b7296075
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Jan 18 09:36:10 2024 +0000
Hide Tethys module
and remove text output in splitpanepositioner
commit 02f1889e39
Merge: 0bc3968d52bbff36
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Jan 18 09:33:26 2024 +0000
Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main
Conflicts:
src/binaryFileStorage/BinaryStore.java
commit 43811c1f9b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Jan 18 09:31:00 2024 +0000
Merge from DG (#124)
* claspath update
* Batch processing
Adding functionality for offline task batch processing.
commit 52bbff36e5
Merge: 0c035aa0b373e169
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Jan 18 09:29:50 2024 +0000
Merge pull request #56 from PAMGuard/main
Merge from main
commit 0bc3968dc8
Merge: 52cc8c71a3a74adb
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Jan 17 21:28:02 2024 +0000
Fix err in binary store
commit 0c035aa0fe
Merge: 52cc8c71a3a74adb
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Jan 17 21:28:02 2024 +0000
Merge branch 'main' of https://github.com/douggillespie/PAMGuard
commit 52cc8c7177
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Jan 17 21:24:04 2024 +0000
Batch processing
Adding functionality for offline task batch processing.
commit b373e169f2
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Jan 17 21:13:14 2024 +0000
updating Tethys help (#123)
commit 5d83af1d42
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Jan 17 21:11:31 2024 +0000
updating Tethys help (#122)
commit 7efc824226
Merge: d05cecafbb17d384
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Jan 17 21:11:13 2024 +0000
Merge branch 'main' into Tethys
commit a3a74adb78
Merge: ac1a7f87bb17d384
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Jan 17 14:37:30 2024 +0000
Merge pull request #55 from PAMGuard/main
MErge from main
commit d05cecaf8b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 12 18:57:38 2024 +0000
updating Tethys help
commit 7a1c697319
Merge: 21fa4affac1a7f87
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 12 15:41:54 2024 +0000
Merge remote-tracking branch 'origin/main' into Tethys
Conflicts:
pom.xml
src/PamController/PamguardVersionInfo.java
commit bb17d384b3
Merge: 031f4c7a21fa4aff
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 12 15:34:05 2024 +0000
Merge branch 'Tethys' into main
commit ac1a7f87ac
Merge: 133da119031f4c7a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 12 15:29:05 2024 +0000
Merge pull request #53 from PAMGuard/main
changes from main
commit 031f4c7ab4
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 12 15:28:23 2024 +0000
V 2.02.09aa with click marking bug fix
commit 217283c704
Merge: 4856a82746d01e62
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 12 11:58:31 2024 +0000
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard
commit 4856a827df
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 12 11:57:11 2024 +0000
click labelling
fixed a couple of problems in click labelling (Viewer mode) when clics
were reassigned to different events.
commit df178a4122
Merge: 782057c0133da119
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 12 10:16:35 2024 +0000
Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main
commit 133da119e0
Merge: f097ddce46d01e62
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 12 10:16:12 2024 +0000
Merge pull request #52 from PAMGuard/main
Merge from main
commit 46d01e62db
Merge: 0e5bca51f097ddce
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 12 10:16:00 2024 +0000
Merge branch 'main' into main
commit 0e5bca5198
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 12 10:11:21 2024 +0000
Update X3 lib to 2.2.7
commit 21fa4aff07
Merge: 73810b85716eb1fa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat Dec 30 18:50:58 2023 +0000
Merge branch 'Tethys' of https://github.com/douggillespie/PAMGuard.git
into Tethys
Conflicts:
src/tethys/swing/TethysMainPanel.java
commit 73810b85bf
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat Dec 30 18:48:24 2023 +0000
use new diider location memory
commit 7a5e8f1031
Merge: e48eb002f097ddce
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat Dec 30 17:39:28 2023 +0000
Merge branch 'main' into Tethys
Conflicts:
pom.xml
src/PamController/PamguardVersionInfo.java
commit e48eb00204
Merge: 70fbeaaf1b8bb14e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat Dec 30 17:37:02 2023 +0000
Merge remote-tracking branch 'upstream/main' into Tethys
Conflicts:
pom.xml
src/loggerForms/FormsDataDisplayTable.java
commit 70fbeaafde
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat Dec 30 17:32:57 2023 +0000
work on deployment wizards
commit 782057c020
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat Dec 30 17:28:23 2023 +0000
claspath update
commit 716eb1faa7
Merge: c63fb3f3e29f6f05
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat Dec 30 17:26:43 2023 +0000
Merge branch 'Tethys' of https://github.com/douggillespie/PAMGuard into Tethys
commit c63fb3f341
Merge: 56bab82bb7cbd259
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat Dec 30 17:07:17 2023 +0000
Merge branch 'main' into Tethys
Conflicts:
src/loggerForms/FormsDataDisplayTable.java
commit f097ddce45
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat Dec 30 17:01:46 2023 +0000
Split pane positioner
Handy little class for remembering and restoring the positions of
jSplitPane's
commit f5c3ce06ce
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Dec 29 17:55:30 2023 +0000
Database opening from Explorer
Sorted so that a viewer database can be opened by right clicking on a
sqlite3 file. Requires updated installer to make appropriate registry
changes. Will be in 2.02.10
commit e29f6f0589
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Dec 22 13:38:18 2023 +0000
Fix Effort null pointers
Trap a coupld of null pointer exceptions which get thrown when there are
no acoustic data.
commit 56bab82be3
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 21 18:34:58 2023 +0000
POM Excludes signature files
Updated POM file to correctly exclude signature files which prevented
PAMGuard from running from the installed version (unless these were
manually removed from the jar file).
commit 99aa3f342c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 21 17:07:23 2023 +0000
Update nilus and javaclient
Updated java client and nilus jar builds for Maven.
commit f4a42d2bb2
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 21 11:22:01 2023 +0000
update pom to groupid tethys
commit 1b8bb14e9d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Dec 20 16:47:18 2023 +0000
Pre release V2.02.09f
With release notes for V2.02.10 which is coming soon ...
commit f9a0716c0f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Dec 20 14:51:10 2023 +0000
Updates from DG (#120)
* Stop command
small change so command is available as a constant
* Lots of small updates to enable opening of a secondary configuration for
batch processing control.
* Fix user input bug in viewer
which created exponential copies of user comments!
* Adding TAST trigger alarm action
To be competed when GW provide correct string for interface
* Echo offline detection
Fix up affected datablocks for offline echo detection
* fix module import
System for importing modules from other psfx files was not working.
Probably wasn't working for quite some time. Now fixed.
* Bug fixes to Match Template classifier
1) When a large template was imported only 1: fftLength of the mathc waveform was used and so clicks would be correlated with noise. The peak of the template is now used when the peak search function is selected.
2) The plus button in the tab pane had disappeared.
3) Seems like the decimators were the wrong round. So the waveforms were using an up sample function when they should have been using a decimator function. and vice versa...major bug when using different sample rates!
* Fix merge
Merged in a single commit from Jamies fork that had updates to the
template classifier. Then had to make a few changes to get it working
with other changes J had made that must have been in other commits.
* Logger forms viewer
Viewer display of logger forms was throwing exceptions on Boolean values
which had been stored as a String or Integer 0 or 1 in some databases.
Now fixed to turn these into a sensible boolean value for the data table
* Logger form plotting
Fixed logger form plotting in Viewer so that points can find their
correct GPS position (based on time)
* Fix small bugs
* Fix settings import
not all imports working. Now seems fixed.
---------
Co-authored-by: Jamie Mac <macster110@gmail.com>
commit b7cbd2592f
Merge: ae8839e7639f3360
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Dec 20 14:48:30 2023 +0000
Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main
commit ae8839e756
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Dec 20 14:48:15 2023 +0000
Fix settings import
not all imports working. Now seems fixed.
commit 639f33607e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Dec 20 09:05:33 2023 +0000
Fix small bugs
commit 3e4dd77908
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Dec 19 16:41:57 2023 +0000
Logger form plotting
Fixed logger form plotting in Viewer so that points can find their
correct GPS position (based on time)
commit 1d9768b8c1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Dec 19 16:41:57 2023 +0000
Logger form plotting
Fixed logger form plotting in Viewer so that points can find their
correct GPS position (based on time)
commit 2fa91d69a5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Dec 19 16:41:57 2023 +0000
Logger form plotting
Fixed logger form plotting in Viewer so that points can find their
correct GPS position (based on time)
commit 1461808b14
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Dec 19 16:41:57 2023 +0000
Logger form plotting
Fixed logger form plotting in Viewer so that points can find their
correct GPS position (based on time)
commit 54f5a5f0fb
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Dec 19 15:54:38 2023 +0000
Logger forms viewer
Viewer display of logger forms was throwing exceptions on Boolean values
which had been stored as a String or Integer 0 or 1 in some databases.
Now fixed to turn these into a sensible boolean value for the data table
commit 0085215eff
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Dec 19 15:54:38 2023 +0000
Logger forms viewer
Viewer display of logger forms was throwing exceptions on Boolean values
which had been stored as a String or Integer 0 or 1 in some databases.
Now fixed to turn these into a sensible boolean value for the data table
commit ea6caecc67
Merge: d200e5c2bfbb58ea
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Dec 19 12:45:56 2023 +0000
Updated POM
working POM for build with Tethys. Note though that it's failing to get
rid of all signature files in the \META-INF\ folder, so the two files
META-INF\ECLIPSE_.SF and META-INF\ECLIPSE_.RSA must be removed before
the jar file can be used.
commit d200e5c2df
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 18 18:30:41 2023 +0000
Maven stuff for nilus and javaclient
commit bfbb58ea5a
Merge: 480f55f6d1b40c1d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 18 18:25:29 2023 +0000
Merge pull request #51 from PAMGuard/main
get whistle det fix
commit d1b40c1d86
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 18 16:48:36 2023 +0000
Release V2.02.09e
fixes to WMD stub removal to make it a lot faster.
commit 3cf0a4e1e6
Merge: 25d10d54480f55f6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 18 15:27:24 2023 +0000
Merge remote-tracking branch 'origin/main' into Tethys
commit 291b00e1b1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 18 15:19:22 2023 +0000
Merge from DG with fixes to MatchedTemplate classifier. (#119)
* Stop command
small change so command is available as a constant
* Lots of small updates to enable opening of a secondary configuration for
batch processing control.
* Fix user input bug in viewer
which created exponential copies of user comments!
* Adding TAST trigger alarm action
To be competed when GW provide correct string for interface
* Echo offline detection
Fix up affected datablocks for offline echo detection
* fix module import
System for importing modules from other psfx files was not working.
Probably wasn't working for quite some time. Now fixed.
* Bug fixes to Match Template classifier
1) When a large template was imported only 1: fftLength of the mathc waveform was used and so clicks would be correlated with noise. The peak of the template is now used when the peak search function is selected.
2) The plus button in the tab pane had disappeared.
3) Seems like the decimators were the wrong round. So the waveforms were using an up sample function when they should have been using a decimator function. and vice versa...major bug when using different sample rates!
* Fix merge
Merged in a single commit from Jamies fork that had updates to the
template classifier. Then had to make a few changes to get it working
with other changes J had made that must have been in other commits.
---------
Co-authored-by: Jamie Mac <macster110@gmail.com>
commit 480f55f6e9
Merge: 2f41c986667b68e2
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 18 15:18:18 2023 +0000
Merge pull request #50 from PAMGuard/main
merge from main (#118)
commit 2f41c986f4
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 18 14:58:24 2023 +0000
Fix merge
Merged in a single commit from Jamies fork that had updates to the
template classifier. Then had to make a few changes to get it working
with other changes J had made that must have been in other commits.
commit 1b9d80b0eb
Author: Jamie Mac <macster110@gmail.com>
Date: Thu Dec 14 12:06:51 2023 +0000
Bug fixes to Match Template classifier
1) When a large template was imported only 1: fftLength of the mathc waveform was used and so clicks would be correlated with noise. The peak of the template is now used when the peak search function is selected.
2) The plus button in the tab pane had disappeared.
3) Seems like the decimators were the wrong round. So the waveforms were using an up sample function when they should have been using a decimator function. and vice versa...major bug when using different sample rates!
commit 667b68e231
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 18 14:09:30 2023 +0000
merge from main (#118)
* Stop command
small change so command is available as a constant
* Lots of small updates to enable opening of a secondary configuration for
batch processing control.
* Fix user input bug in viewer
which created exponential copies of user comments!
* Adding TAST trigger alarm action
To be competed when GW provide correct string for interface
* Echo offline detection
Fix up affected datablocks for offline echo detection
* fix module import
System for importing modules from other psfx files was not working.
Probably wasn't working for quite some time. Now fixed.
commit be88f4b296
Merge: 0039ff747a321f6d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 18 14:07:19 2023 +0000
# WARNING: head commit changed in the meantime
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard into main
commit 7a321f6d95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 18 13:28:38 2023 +0000
Revert "Merge branch 'main' of https://github.com/PAMGuard/PAMGuard"
This reverts commit f52a27ccf2, reversing
changes made to 4a5c6fe52e.
commit f52a27ccf2
Merge: 4a5c6fe5f8d2de44
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 18 12:45:53 2023 +0000
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard
commit 4a5c6fe52e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 18 12:45:49 2023 +0000
small fix in histograms
small fix in histograms to avoid null
commit 25d10d54b4
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Dec 17 19:28:03 2023 +0000
Start Tethys Help
commit a761100ba7
Merge: c3edae510039ff74
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Dec 17 12:52:36 2023 +0000
Merge remote-tracking branch 'origin/main' into Tethys
commit c3edae516b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Dec 17 12:52:06 2023 +0000
Small error handling
commit f8d2de4482
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Dec 17 12:27:31 2023 +0000
Settings import (#117)
* Stop command
small change so command is available as a constant
* Lots of small updates to enable opening of a secondary configuration for
batch processing control.
* Fix user input bug in viewer
which created exponential copies of user comments!
* Adding TAST trigger alarm action
To be competed when GW provide correct string for interface
* Echo offline detection
Fix up affected datablocks for offline echo detection
* fix module import
System for importing modules from other psfx files was not working.
Probably wasn't working for quite some time. Now fixed.
commit 0039ff7422
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Dec 17 12:19:18 2023 +0000
fix module import
System for importing modules from other psfx files was not working.
Probably wasn't working for quite some time. Now fixed.
commit 2e29e9cd95
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Dec 15 17:49:39 2023 +0000
Deployment and Detections work
Big tidy up of Deployment and Detections output. Think it' spretty close
to a functional system now.
commit 75d349e33c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 14 18:52:17 2023 +0000
Echo offline detection
Fix up affected datablocks for offline echo detection
commit f55311ea36
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 14 18:51:42 2023 +0000
Adding TAST trigger alarm action
To be competed when GW provide correct string for interface
commit 760b9769d7
Merge: 4297afdc951e3116
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 14 12:43:07 2023 +0000
Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main
commit 4297afdc51
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 14 12:42:41 2023 +0000
Fix user input bug in viewer
which created exponential copies of user comments!
commit 3059e087ac
Merge: 9a00058687813746
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 14 12:27:14 2023 +0000
Merge branch 'Tethys' of C:\Users\dg50\source\repos\PAMGuardTethys into
Tethys
commit 9a0005861c
Merge: 951e31165b649edc
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 14 12:14:44 2023 +0000
Merge branch 'Tethys' of C:\Users\dg50\source\repos\PAMGuardTethys into
Tethys
commit 8781374685
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 14 11:57:44 2023 +0000
Small changes to deployment table
commit ef92e1eea9
Merge: 02ad66db951e3116
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 14 10:53:46 2023 +0000
Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main
commit 951e3116a5
Merge: 2dd90f6ab12ccf9c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 14 10:51:17 2023 +0000
Merge pull request #48 from PAMGuard/main
Merge from main
commit b12ccf9c67
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 14 10:50:29 2023 +0000
Merge with main (#116)
* Stop command
small change so command is available as a constant
* Lots of small updates to enable opening of a secondary configuration for
batch processing control.
commit 02ad66db3b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 14 10:33:46 2023 +0000
User input viewer bug
PAMGuard was marking multiline comments as changed and then relogging
them. Led to exponential increase in database size!
commit 03483ded18
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Dec 13 17:31:35 2023 +0000
Deployment export
Improved deployment export interface and options.
commit 860d1bec17
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 7 20:08:17 2023 +0000
Update Calibration export
Stop repeating hydrophones and add two addresses to Calibrations docs
commit 9c86b41027
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 7 15:10:45 2023 +0000
Project info dialog
More wrapping of nilus objects to make a general project info tab in
PAMGuard. This is global and can share basic project informatin with the
Tethys module.
commit 7721d7f1c0
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Dec 6 17:35:57 2023 +0000
Global metadata
Reorganised how global meta data for a PAMGuard dataset is managed by
wrapping a nilus deployment object so that PAMGuard settings can
serialise and unpack the xml version of a nilus Deployment object.
commit bafe93e7f5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Dec 6 12:20:40 2023 +0000
SQLLogging revert
Revert main table definition class used by SQLLogging to
PamTableDefinition, back from EmptyTableDefinition, to maintain
compatibility with existing plugin modules.
commit 9939e8aa85
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 4 21:27:00 2023 +0000
Calibrations Export
Functional Calibrations export wizard and display
commit 275a53c042
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Dec 3 18:21:09 2023 +0000
Calibrations display
display of calibrations documents + some general tidying up of document
management and display.
commit 840e6c89a1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Nov 16 20:36:14 2023 +0000
R2.02.09d
Fix matched template classifier import
fix azigram help file image display
commit 2dd90f6a32
Merge: 58fe0d77acc806d3
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 15 15:02:50 2023 +0000
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard into main
commit 58fe0d7754
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 15 15:02:18 2023 +0000
Lots of small updates to enable opening of a secondary configuration for
batch processing control.
commit acc806d375
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 15 13:08:02 2023 +0000
Updated X3 library to 2.2.6
commit a4f484c76c
Merge: 8e60ad2ed7c4c278
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 15 09:44:09 2023 +0000
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main
commit 8e60ad2eff
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 15 09:43:39 2023 +0000
update to array diagnostics and sensor control
commit d7c4c278d8
Author: m2oswald <45486636+m2oswald@users.noreply.github.com>
Date: Wed Nov 15 09:17:49 2023 +0000
Added code to Rocca for training/testing classifier (#114)
* allow Rocca to run without classifiers
Fixed bug that threw an error if no classifier files were specified in Rocca Params dialog
* add rocca switch to enable dev mode
currently only shows/hides extra buttons in the Params dialog, but will
extend to more options in the future
* Fix memory issue with RoccaContourDataBlocks not being released for
garbage collection
Set RoccaContourDataBlock objects to null and stop PamObserver Timer to
force release
* Fix problem tracing whistles in Rocca spectrogram pop-up
Whistle and raw data were being cleared before the user had time to trace out the whistle, causing PAMGuard to throw an exception. Both were already being cleared when the pop-up window is closed, so no need to do it here.
* updated for training/testing classifiers
commit d5f504dcd1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Nov 10 18:08:31 2023 +0000
Bearing localiser offline save
Bug stopping it correctly saving data from the offline task to the
database fixed.
commit 6cc01fe77a
Merge: 1f8e790a9fca879c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Oct 27 10:06:52 2023 +0100
Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main
commit 9fca879c39
Merge: bff8eeeb7a44d49e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Oct 27 10:02:47 2023 +0100
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main
commit 7a44d49e27
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Oct 27 09:59:28 2023 +0100
X3 Version 2.2.3
Add maven jar files for X3/SUD version 2.2.3
commit bff8eeebc5
Merge: 3da3f31bfa5fe994
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Oct 26 15:50:26 2023 +0100
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main
commit fa5fe9943d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Oct 26 14:44:41 2023 +0100
update sud file management to more efficiently skip to the correct part
of a sud file when reading data offline.
commit 1f8e790ae5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 29 13:43:49 2023 +0100
Collection enum
Made an enum for the different collections. More robust than passing the
names around as strings. Contains functions for converting between the
collection name and the documents names within those collections.
commit 773f1f542b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Sep 24 21:59:15 2023 +0100
Species map i/o
commit 8257122d14
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 21 18:01:41 2023 +0100
Log Tethys output and include instrumentid in Deployment queries
commit 4d294b56a8
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Sep 19 16:55:33 2023 +0100
Click event output
commit 5fe0927c10
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Sep 18 12:49:39 2023 +0100
Noise logging
commit 415ec87938
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Sep 17 21:10:23 2023 +0100
noise output
commit 158eedce8c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 15 15:15:28 2023 +0100
Detections output
more work on detections output.
commit db1cc75bc1
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Sep 13 17:28:47 2023 +0100
More output
More changes to Detections output.
commit 85fd84d18a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Sep 11 21:52:46 2023 +0100
Fix binned output
couple of fixes in binned output
commit 65dfb5688b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Sep 11 17:47:50 2023 +0100
More on granularity
Nice format of granularity in display tables.
commit c221d78aa2
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Sep 11 17:07:15 2023 +0100
Added bin granularity
binned granularity in place. TODO Encounter granularity.
commit baca001ed8
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 8 16:31:00 2023 +0100
Param output only if not display
commit 7465243169
Merge: fb00a7573da3f31b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 8 13:32:22 2023 +0100
Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main
commit 3da3f31b33
Merge: dbeaa6683385935a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 8 13:29:37 2023 +0100
Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main
commit dbeaa66821
Merge: 1b5454be60435e56
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Sep 8 13:26:11 2023 +0100
Merge branch 'main' of https://github.com/PAMGuard/PAMGuard into main
commit 60435e567a
Author: Brian S Miller <93690136+BrianSMiller@users.noreply.github.com>
Date: Fri Sep 8 21:54:40 2023 +1000
Fixes issues #111 and fixes#112 (DIFAR module crashes and ability to use Deep Learning Detections in DIFAR module) (#110)
* Bugfix for OverlayMarks
Check for a null pointer exception in OverlayMarks that was causing a crash on startup.
* Bugfix for null pointer in symbol manager
Fix a bug that I found where the DIFAR module was crashing the symbol manager. Seems that this was due to this subclass of clip generator having a null value for it's uniqueName. I've fixed by checking for null values and assigning a generic symbol when null.
* DeepLearning detections canGenerateClips=true
Set flag in DeepLearning detector so that detections are considered 'clips' by Pamguard. This allows them to be processed automatically in the DIFAR Localisation module (and maybe others).
* DIFAR: bugfix frequency limits for auto-detections
Fix a bug in DIFAR module where the frequency limits of automated detections were not being set properly by the DIFAR module.
* DeepLearning - Bugfix to detection duration
Fix bug in deep learning detector where duration (in samples) was being set to number of samples in a hop instead of the number of samples in a segment.
commit fb00a757cd
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Sep 7 16:58:38 2023 +0100
Data export
A few fixes in Detections export.
commit 3688719e25
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Aug 31 17:06:51 2023 +0100
Working parameter output
Only just and not complete, but working.
commit 07ced6ae6d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 29 11:53:40 2023 +0100
Species info
Sort out of species info which hopefully now deals with all
eventualities.
commit 74deebe446
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Aug 8 18:29:45 2023 +0100
Fixed queries
Also added internal display of existing docuemtns (so they can be
deleted)
commit 9018176899
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Jul 20 19:06:42 2023 +0100
ITIS Codes GUI
Basic system in place for handling ITIS species codes.
commit 5c969d8889
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Jul 19 13:56:39 2023 +0100
work on species mapping
commit 527aeccbb8
Merge: cd70026c3385935a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Jul 3 18:00:53 2023 +0100
Merge branch 'main' of https://github.com/douggillespie/PAMGuard into
main
commit cd70026cf8
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Jul 3 17:53:35 2023 +0100
Starting to map species codes
commit 3385935aec
Merge: 68b2f3bbc3c31c33
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Jul 3 17:48:41 2023 +0100
Merge pull request #47 from PAMGuard/main
pull from main
commit 75470b450b
Merge: f3944e3568b2f3bb
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jun 9 13:01:35 2023 +0100
Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main
Conflicts:
src/PamModel/PamModel.java
commit f3944e3536
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jun 9 12:56:23 2023 +0100
Update FolderInputSystem.java
commit 68b2f3bb53
Merge: 1b5454beb0a06300
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jun 9 12:53:30 2023 +0100
Merge pull request #46 from PAMGuard/main
get V2.02.08 from main
commit 3df05c3ec6
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 29 15:27:21 2023 +0100
Document export
commit 36da1bcbeb
Merge: 1ea20d801b5454be
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 29 09:02:48 2023 +0100
Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main
commit 1b5454be91
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri May 26 10:27:25 2023 +0100
Stop command
small change so command is available as a constant
commit d841959171
Merge: f97f967bd350d5a7
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri May 26 09:53:08 2023 +0100
Merge pull request #45 from PAMGuard/main
pull from main
commit f97f967b23
Merge: 508ca524c17208d3
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue May 23 15:46:57 2023 +0100
Merge pull request #44 from PAMGuard/main
Map file errors
commit 508ca524e8
Merge: becb24dcdb037c6d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri May 12 15:38:04 2023 +0100
Merge pull request #43 from PAMGuard/main
update from main
commit 1ea20d80ed
Merge: 49843b40becb24dc
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 8 15:46:04 2023 +0100
Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main
commit becb24dcc5
Merge: 2953d82b29f0bf7e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 8 15:43:58 2023 +0100
Merge pull request #42 from PAMGuard/main
X3 updates
commit 49843b405f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun May 7 20:06:59 2023 +0100
Some query changes
Changes in server code required update of some of the json for existing
queries.
commit 00410d2017
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun May 7 19:00:37 2023 +0100
Exception handling
Exception handling and warning messages on Tethys transactions
commit 71c8415bc8
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 6 19:26:04 2023 +0100
Playing with export options
commit 38b05b13c5
Merge: 8a9719b42953d82b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sat May 6 11:15:48 2023 +0100
Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main
commit 8a9719b425
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon May 1 18:55:35 2023 +0100
Tethys working again
And a bit more playing around with metadata handling for Deploymnet
documents
commit 379cd61afa
Merge: 4f0f4a6cf74bb5eb
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Apr 24 13:35:51 2023 +0100
Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main
commit 4f0f4a6c36
Merge: dfb78813795b32e4
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Apr 13 18:04:38 2023 +0100
Merge remote-tracking branch 'PAMGuardDGOriginal/main' into main
Conflicts:
src/binaryFileStorage/BinaryStoreProcess.java
src/clickDetector/layoutFX/clickClassifiers/SweepClassifierSetPaneFX.java
commit dfb78813ea
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Apr 13 17:41:52 2023 +0100
Update TethysControl.java
commit dbc8f0c682
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Apr 4 21:02:09 2023 +0100
Men items to open collections in browser
commit 35fa8270d2
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Apr 4 20:53:14 2023 +0100
Changes to match server updates
Deleting now working. am automatically calling a windows curl command to
disable the cache on the server.
commit faea94205c
Merge: 573785d916e8184a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Sun Apr 2 11:15:19 2023 +0100
Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main
Conflicts:
src/Array/ArrayDialog.java
src/PamModel/PamModel.java
src/clickDetector/layoutFX/clickClassifiers/SweepClassifierSetPaneFX.java
commit 573785d98f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Mar 31 19:07:02 2023 +0100
GUi Play
Export wizard for detections
commit 4be259b76b
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Mar 29 20:57:54 2023 +0100
GUI Play
Experimenting with GUI components
commit 642f1da873
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Mar 22 20:07:17 2023 +0000
updated doc names
Dog names now match their id so it's easier to delete them from Tethys
commit c7ceba1604
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Mar 21 20:05:38 2023 +0000
GUI Work.
working on some GUI / control options. Semi functional. Seem to have a
problem with time zones converting from XML time to millis which need
sorting.
commit f51a519d82
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Mar 17 21:26:13 2023 +0000
Start Tethys GUI
commit b344b775ec
Merge: cff6f718ecf364f9
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Mar 16 16:35:09 2023 +0000
Merge branch 'main' of https://github.com/douggillespie/PAMGuardTethys
commit cff6f71881
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Mar 16 16:34:03 2023 +0000
update autoprovider
commit ecf364f999
Merge: 7f680f3e289b0659
Author: kbolaughlin <kolaughl@ucsd.edu>
Date: Thu Mar 16 09:14:11 2023 -0700
Merge branch 'main' of https://github.com/douggillespie/PAMGuardTethys
commit 7f680f3e20
Author: kbolaughlin <kolaughl@ucsd.edu>
Date: Thu Mar 16 09:13:42 2023 -0700
fixed some deploymentData defaulting
fixed some deploymentData defaulting
commit 289b065914
Merge: 8c3c0098140af14c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Mar 15 23:39:33 2023 +0000
Merge branch 'main' of https://github.com/douggillespie/PAMGuardTethys
commit 8c3c0098da
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Mar 15 23:38:51 2023 +0000
work
commit 140af14cba
Author: kbolaughlin <kolaughl@ucsd.edu>
Date: Wed Mar 15 16:38:13 2023 -0700
required field update and post to tethys fxn updates
fill in required data for deployments/detections and minor tweaks to post to tethys fxn
commit d96ace1ca2
Merge: f15a6daf27b8456c
Author: kbolaughlin <kolaughl@ucsd.edu>
Date: Wed Mar 15 15:05:57 2023 -0700
Merge branch 'main' of https://github.com/douggillespie/PAMGuardTethys
commit f15a6dafa6
Author: kbolaughlin <kolaughl@ucsd.edu>
Date: Wed Mar 15 15:05:33 2023 -0700
TethysExportControl
add post to tethys code in TethysExportControl
commit 27b8456c5a
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Mar 15 22:04:13 2023 +0000
More detection work
commit e8e947b91f
Merge: ceefa6184876899b
Author: kbolaughlin <kolaughl@ucsd.edu>
Date: Wed Mar 15 12:38:33 2023 -0700
Merge branch 'main' of https://github.com/douggillespie/PAMGuardTethys
commit ceefa6188c
Author: kbolaughlin <kolaughl@ucsd.edu>
Date: Wed Mar 15 12:38:29 2023 -0700
Update TethysExporter.java
updated export code to add namespace to the xml produced
commit 4876899b54
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Mar 15 18:13:11 2023 +0000
Detections Document ready to go
commit f97247f148
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Mar 15 17:21:35 2023 +0000
Detections output
Working towards output of Detections ...
commit 98ce0ff9d2
Merge: 68b7d08b3991a871
Author: kbolaughlin <kolaughl@ucsd.edu>
Date: Tue Mar 14 14:16:02 2023 -0700
Merge branch 'main' of https://github.com/douggillespie/PAMGuardTethys
commit 68b7d08bc6
Author: kbolaughlin <kolaughl@ucsd.edu>
Date: Tue Mar 14 14:14:22 2023 -0700
Update TethysExporter.java
minor tweak
commit 3991a87102
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Mar 14 21:13:48 2023 +0000
up[dated exporter
commit 0fad7c6cfa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Mar 14 17:34:45 2023 +0000
Deployment doc
Work on deployment document population
commit 103c050d0c
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Tue Mar 14 17:28:13 2023 +0000
Trying to Merge with KB Changes
commit 2dd870956a
Author: kbolaughlin <kolaughl@ucsd.edu>
Date: Tue Mar 14 08:40:49 2023 -0700
Update TethysExporter.java
small fix
commit 8842166f43
Merge: 799c7b21501c0ec2
Author: kbolaughlin <kolaughl@ucsd.edu>
Date: Tue Mar 14 08:38:08 2023 -0700
Merge branch 'main' of https://github.com/douggillespie/PAMGuardTethys
commit 799c7b218e
Author: kbolaughlin <kolaughl@ucsd.edu>
Date: Mon Mar 13 17:27:39 2023 -0700
Update TethysExporter.java
file importer
commit 501c0ec292
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Mar 13 21:44:19 2023 +0000
Deployment positions
commit 98cf904830
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Mar 13 20:45:51 2023 +0000
first very incomplete deployment doc
commit 456f9102db
Merge: 534765d17d69992d
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Mar 13 18:36:36 2023 +0000
Merge branch 'main' of https://github.com/douggillespie/PAMGuardTethys
commit 534765d1cc
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Mar 13 18:35:25 2023 +0000
notes
commit 7d69992d44
Author: kbolaughlin <kolaughl@ucsd.edu>
Date: Mon Mar 13 11:33:46 2023 -0700
Update TethysExporter.java
testing
commit 24c7baab6e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Mar 13 18:31:04 2023 +0000
Notes
commit 43ea481c3f
Author: kbolaughlin <kolaughl@ucsd.edu>
Date: Mon Mar 13 11:05:10 2023 -0700
adding deployment recovery pair
commit bfed9cfa00
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Feb 23 13:37:53 2023 +0000
Update to Nilus 3
commit 9c10af43bc
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Feb 22 10:51:04 2023 +0000
Added code to find acquisition settings
This is most of the data needed for TEthys
commit f12be978aa
Merge: b2e6f85f5b649edc
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Feb 1 10:23:39 2023 +0000
Merge pull request #2 from douggillespie/Tethys
Merging Tethys branch into main
commit 5b649edc19
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 27 15:13:30 2023 +0000
Comments
Added a couple of comments to help SDSU folk get off the ground
commit b2e6f85faf
Merge: 738c9ab61c11e3da
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 27 14:34:12 2023 +0000
Merge pull request #1 from douggillespie/Tethys
Tethys
commit 1c11e3da15
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Fri Jan 27 11:11:02 2023 +0000
DBXM Export
A few functions to help find data.
commit f02001a6fc
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Jan 25 16:40:03 2023 +0000
Changes for Tethys integration
commit 5e6cd42eea
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Thu Dec 15 18:21:17 2022 +0000
Tethys Export
A bit of fun writing some outline functions to export data to Tethys.
commit 48716cb366
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Mon Dec 12 17:04:20 2022 +0000
XML Settings
Added a new log of XML settings / Effort for each module to the
database. Had to make a lot of changes so that the base table in
SQLLogging is of type EmptyTableDefinition, not PamTableDefinition.
Needs a lot of testing and may break plugins using logging features.
commit 29230a5c5f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date: Wed Nov 23 14:56:25 2022 +0000
Better XML
Improving XML data for each detector
* Update .project
* RWE imporvement to peak detection and dealing with smoothing.
* Make improvements to MARW edge detector so that it doesn't merge
harmonics, by using a threshold down from the peak as well as up from
the noise
Douglas Gillespie