.. |
angsd
|
angsd: 0.938 -> 0.940
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2022-10-14 14:50:26 +00:00 |
ants
|
ants: 2.4.1 -> 2.4.2
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2022-10-19 09:19:31 +08:00 |
aragorn
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
astral
|
treewide: set sourceProvenance for packages containing downloaded jars
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2022-06-04 19:47:57 +01:00 |
bayescan
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bayescan: fix the build
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2022-05-13 12:00:08 +02:00 |
bcftools
|
bcftools: 1.15 -> 1.16
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2022-08-18 18:44:42 +00:00 |
bedops
|
bedops: 2.4.40 -> 2.4.41
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2022-07-19 09:09:52 +10:00 |
bedtools
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lzma: deprecate alias
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2021-04-04 19:49:52 +02:00 |
bftools
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treewide: set sourceProvenance for packages containing downloaded jars
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2022-06-04 19:47:57 +01:00 |
blast
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blast: 2.12.0 -> 2.13.0
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2022-04-29 09:39:10 -05:00 |
bowtie
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bowtie: fix build on case insensitive file systems
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2022-05-11 03:20:03 -05:00 |
bowtie2
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bowtie2: 2.4.4 -> 2.4.5
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2022-01-23 22:45:59 +00:00 |
bppsuite
|
|
|
bwa
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bwa: pull upstream fix for -fno-common tollchains
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2022-05-08 08:56:43 +01:00 |
cd-hit
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perlPackages.ImageMagick: rename from perlPackages.PerlMagick
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2021-08-02 20:05:00 +03:00 |
clustal-omega
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treewide: add meta.mainProgram to many packages
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2022-04-14 10:24:01 -07:00 |
cmtk
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treewide: pkgs/applications: mark broken for darwin
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2022-05-29 10:56:04 +02:00 |
conglomerate
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
dcm2niix
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dcm2niix: support usage of suggested Cloudflare zlib
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2022-04-18 15:00:45 -04:00 |
deeptools
|
deeptools: 3.5.0 -> 3.5.1
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2022-01-21 05:36:24 +00:00 |
delly
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delly: 1.1.5 -> 1.1.6
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2022-11-08 18:21:37 +00:00 |
diamond
|
diamond: update metadata
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2022-07-13 12:33:33 +02:00 |
dssp
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dssp: init at 4.0.5
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2022-07-19 12:17:34 +09:00 |
ecopcr
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maintainers: remove metabar
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2022-06-29 00:52:13 +02:00 |
eggnog-mapper
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eggnog-mapper: 2.1.7 -> 2.1.9
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2022-08-21 12:45:21 +00:00 |
emboss
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pkgs/applications: rename name to pname&version part 2
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2021-11-07 14:53:06 +01:00 |
est-sfs
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est-sfs: fix darwin build
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2021-05-15 12:10:05 +02:00 |
exonerate
|
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
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2021-01-19 01:16:25 -08:00 |
EZminc
|
EZminc: itk4 -> itk (formally; package is broken)
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2022-09-04 13:36:24 -04:00 |
fastp
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fastp: 0.23.1 -> 0.23.2
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2021-12-02 08:03:17 +11:00 |
febio-studio
|
febio-studio: init at 1.6.1
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2022-02-21 16:43:36 +01:00 |
flywheel-cli
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treewide/applications: add sourceType binaryNativeCode for many packages
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2022-06-23 18:38:19 +01:00 |
freebayes
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freebayes: add -fcommon workaround
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2022-05-14 13:19:17 +01:00 |
gatk
|
gatk: 4.2.6.1 -> 4.3.0.0
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2022-10-16 21:48:30 +08:00 |
genmap
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genmap: init 1.3.0
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2021-12-04 06:51:16 +11:00 |
hisat2
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hisat2: update homepage
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2022-02-06 15:10:53 +01:00 |
hmmer
|
hmmer: restrict platforms to x86_64
|
2021-11-20 19:17:57 +00:00 |
igv
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igv: 2.14.0 -> 2.14.1
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2022-09-05 22:29:15 +00:00 |
inormalize
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
iqtree
|
iqtree: init at 2.2.0.4
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2022-05-30 10:53:40 +02:00 |
itsx
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
iv
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pkgs/applications: rename name to pname&version part 2
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2021-11-07 14:53:06 +01:00 |
kallisto
|
kallisto: 0.46.2 -> 0.48.0
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2022-01-31 09:53:54 -08:00 |
kent
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
kssd
|
kssd: pull upstream fix for -fno-common tollchains
|
2022-05-21 11:22:53 +01:00 |
last
|
last: 1409 -> 1411
|
2022-09-21 08:24:01 +00:00 |
MACS2
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MACS2: mark broken
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2022-06-06 11:46:22 -07:00 |
macse
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treewide: set sourceProvenance for packages containing downloaded jars
|
2022-06-04 19:47:57 +01:00 |
mafft
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mafft: 7.505 -> 7.508
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2022-09-09 13:26:38 +09:00 |
manta
|
treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
megahit
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treewide: optional -> optionals where the argument is a list
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2022-10-10 15:40:21 +03:00 |
meme-suite
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pkgs.applications: remove unused args
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2022-10-12 16:00:16 +02:00 |
messer-slim
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messer-slim: 4.0 -> 4.0.1
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2022-09-15 22:25:51 +00:00 |
migrate
|
treewide: pkgs/applications: mark broken for darwin
|
2022-05-29 10:56:04 +02:00 |
minc-tools
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
minc-widgets
|
treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
minia
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
minimap2
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minimap2: enable aarch64 builds (#161169)
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2022-03-04 12:27:29 +01:00 |
mmseqs2
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mmseqs2: init at 14-7e284
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2022-10-31 23:49:10 +09:00 |
mni_autoreg
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mni_autoreg: unstable-2017-02-22 -> unstable-2022-05-20
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2022-07-26 16:03:12 -04:00 |
mosdepth
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mosdepth: 0.3.2 -> 0.3.3
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2022-02-12 14:31:47 +00:00 |
mrbayes
|
mrbayes: 3.2.7 -> 3.2.7a
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2021-07-27 14:30:23 +02:00 |
mrtrix
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treewide: pkgs/applications: mark broken for aarch64-linux
|
2022-05-30 13:42:58 +02:00 |
muscle
|
treewide: pkgs/applications: mark broken for aarch64-linux
|
2022-05-30 13:42:58 +02:00 |
N3
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
neuron
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treewide: optional -> optionals where the argument is a list
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2022-10-10 15:40:21 +03:00 |
niftyreg
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
niftyseg
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niftyseg: switch to fetchFromGitHub
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2021-12-23 19:11:17 +01:00 |
obitools
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obitools3: removed useless python restriction
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2021-11-08 07:51:48 +01:00 |
octopus
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octopus-caller: backport patch to fix build
|
2022-10-25 09:52:28 +11:00 |
paml
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paml: add -fcommon workaround
|
2022-05-22 20:23:12 +01:00 |
picard-tools
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picard-tools: 2.26.11 -> 2.27.4
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2022-07-29 16:12:10 +00:00 |
platypus
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treewide: makeWrapper buildInputs to nativeBuildInputs
|
2021-02-19 20:09:16 +07:00 |
plink-ng
|
treewide: pkgs/applications: mark broken for aarch64-linux
|
2022-05-30 13:42:58 +02:00 |
poretools
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python,pythonPackages: make aliases
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2022-01-16 18:39:59 +00:00 |
prodigal
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treewide: add targetPrefix to hardcoded references to CC=cc
|
2021-02-20 01:01:46 +07:00 |
quast
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treewide/applications: add sourceType binaryNativeCode for many packages
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2022-06-23 18:38:19 +01:00 |
raxml
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raxml-mpi: remove appendToName to have a consistent package name for repology
|
2022-02-28 12:46:15 +01:00 |
repseek
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repseek: init at 9Sep2014 (#148017)
|
2022-01-31 14:59:32 +01:00 |
sambamba
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sambamba: fix compilation on Darwin, cleanup installPhase
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2022-10-23 16:12:47 +02:00 |
samblaster
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samblaster: fix darwin build
|
2021-05-18 13:41:51 +02:00 |
samtools
|
treewide: optional -> optionals where the argument is a list
|
2022-10-10 15:40:21 +03:00 |
seaview
|
seaview: 5.0.4 -> 5.0.5
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2021-12-12 15:59:16 +00:00 |
seqkit
|
seqkit: init at 2.3.1
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2022-11-04 08:51:32 +01:00 |
seqtk
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seqtk: init at 1.3
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2022-09-25 19:55:58 -04:00 |
snpeff
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treewide: set sourceProvenance for packages containing downloaded jars
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2022-06-04 19:47:57 +01:00 |
somatic-sniper
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
sortmerna
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pkgs.applications: remove unused args
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2022-10-12 16:00:16 +02:00 |
spades
|
Merge pull request #184694 from r-ryantm/auto-update/SPAdes
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2022-08-23 20:21:42 +02:00 |
stacks
|
stacks: 2.59 -> 2.60
|
2022-01-02 19:23:58 +01:00 |
star
|
star: 2.7.9a -> 2.7.10a
|
2022-01-24 19:51:44 +01:00 |
strelka
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
subread
|
treewide: pkgs/applications: mark broken for darwin
|
2022-05-29 10:56:04 +02:00 |
sumatools
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
svaba
|
Merge pull request #175259 from trofi/workaround-fno-common-for-svaba
|
2022-06-03 05:59:16 +00:00 |
tebreak
|
treewide: remove nativeBuildInputs that are in stdenv
|
2022-04-16 21:46:46 +03:00 |
treemix
|
treemix: init at 1.13
|
2022-09-05 06:55:03 +02:00 |
trimal
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
truvari
|
truvari: 2.0.2 -> 2.1.1 (#126839)
|
2021-06-15 22:14:20 +02:00 |
varscan
|
treewide: set sourceProvenance for packages containing downloaded jars
|
2022-06-04 19:47:57 +01:00 |
vcftools
|
treewide: move pkg-config, autoreconfHook, intltool to nativeBuildInputs
|
2022-09-26 17:53:26 +03:00 |
whisper
|
treewide: pkgs/applications: mark broken for darwin
|
2022-05-29 10:56:04 +02:00 |
xenomapper
|
python3Packages.xenomapper: move to top-level
|
2022-01-01 02:09:11 +01:00 |