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bowtie: fix build on case insensitive file systems

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Add a patch that removes the current source directory from the include
search path during compilation so that #include <version> does not end
up picking the VERSION source code file.
This commit is contained in:
Theodore Ni 2022-05-11 03:17:52 -05:00
parent 802a8416b6
commit 81046b393b
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1 changed files with 10 additions and 0 deletions
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pkgs/applications/science/biology/bowtie/default.nix
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@ -19,6 +19,16 @@ stdenv.mkDerivation rec {
url = "https://github.com/BenLangmead/bowtie/commit/091d72f4cb69ca0713704d38bd7f9b37e6c4ff2d.patch";
sha256 = "sha256-XBvgICUBnE5HKpJ36IHTDiKjJgLFKETsIaJC46uN+2I=";
})
# Without this patch, compilation adds the current source directory to the
# include search path, and #include <version> in standard library code can
# end up picking the unrelated VERSION source code file on case-insensitive
# file systems.
(fetchpatch {
name = "fix_include_search_path";
url = "https://github.com/BenLangmead/bowtie/commit/c208b9db936eab0bc3ffdf0182b4f59a9017a1c4.patch";
sha256 = "sha256-772EE+oWFWXssSMabPryb0AfIS1tC10mPTRCBm7RrUs=";
})
];
buildInputs = [ zlib ];