| .. |
|
angsd
|
angsd: pull patch pending upstream inclusion for parallel build fix
|
2023-08-20 08:50:53 +01:00 |
|
ants
|
ants: 2.5.0 -> 2.5.1
|
2024-01-26 01:12:12 +01:00 |
|
aragorn
|
aragorn: fix format
|
2023-06-08 18:42:29 +09:00 |
|
astral
|
|
|
|
bamtools
|
bamtools: init at 2.5.2
|
2023-08-18 00:17:15 +09:00 |
|
bayescan
|
|
|
|
bcftools
|
bcftools: 1.18 -> 1.19
|
2023-12-13 06:48:21 +00:00 |
|
bedops
|
bedops: fix build on darwin
|
2023-04-24 22:11:47 +09:00 |
|
bedtools
|
bedtools: 2.31.0 -> 2.31.1
|
2023-11-09 06:18:08 +00:00 |
|
bftools
|
|
|
|
bioawk
|
bioawk: init at unstable-2017-09-11
|
2023-08-18 00:36:09 +09:00 |
|
blast
|
blast-bin: add sourceProvenance to meta
|
2023-10-07 10:12:24 +09:00 |
|
bowtie
|
|
|
|
bowtie2
|
bowtie2: 2.5.2 -> 2.5.3
|
2024-01-18 01:41:31 +00:00 |
|
bppsuite
|
bppsuite: fix homepage
|
2023-06-15 12:18:11 -04:00 |
|
bwa
|
bwa: add runHook
|
2023-05-15 16:13:49 +09:00 |
|
bwa-mem2
|
bwa-mem2: init at version 2.2.1
|
2023-08-23 15:02:06 -07:00 |
|
cd-hit
|
|
|
|
clustal-omega
|
|
|
|
cmtk
|
cmtk: fix format
|
2023-07-11 17:50:47 +09:00 |
|
conglomerate
|
|
|
|
dcm2niix
|
dcm2niix: 1.0.20211006 -> 1.0.20230411
|
2024-02-07 16:11:03 +10:00 |
|
deeptools
|
deeptools: fix build
|
2024-01-28 12:17:37 -08:00 |
|
delly
|
delly: 1.1.8 -> 1.2.6
|
2023-12-22 18:36:25 +00:00 |
|
diamond
|
diamond: 2.1.7 -> 2.1.8
|
2023-06-25 04:35:30 +00:00 |
|
dssp
|
dssp: 4.4.4.1 -> 4.4.5
|
2023-11-24 22:34:06 +09:00 |
|
ecopcr
|
|
|
|
eggnog-mapper
|
eggnog-mapper: 2.1.10 -> 2.1.12
|
2024-01-18 19:17:47 +00:00 |
|
emboss
|
|
|
|
est-sfs
|
|
|
|
exonerate
|
|
|
|
EZminc
|
|
|
|
fastp
|
fastp: 0.23.3 -> 0.23.4
|
2023-06-04 03:21:21 +00:00 |
|
febio-studio
|
|
|
|
flywheel-cli
|
treewide: s_targetPlatform_hostPlatform_ in non-compiler packages
|
2023-11-17 08:07:34 +00:00 |
|
freebayes
|
|
|
|
gatk
|
gatk: 4.4.0.0 -> 4.5.0.0
|
2023-12-15 04:20:42 +00:00 |
|
genmap
|
|
|
|
hh-suite
|
hh-suite: fix build on GCC 13
|
2024-02-08 21:54:47 +00:00 |
|
hisat2
|
|
|
|
hmmer
|
hmmer: add changelog to meta
|
2023-09-24 04:24:00 +00:00 |
|
igv
|
igv: use jdk17 instead of jdk11 (#285521)
|
2024-02-01 14:42:34 +01:00 |
|
inormalize
|
inormalize: fix build on darwin
|
2024-01-21 23:26:55 +01:00 |
|
iqtree
|
iqtree: 2.2.2.6 -> 2.2.2.7
|
2023-08-25 12:25:13 +00:00 |
|
itsx
|
|
|
|
iv
|
|
|
|
jbrowse
|
jbrowse: init at 2.5.0
|
2023-05-12 11:24:26 -07:00 |
|
kalign
|
kalign: 3.3.5 -> 3.4.0
|
2023-12-11 06:26:11 +00:00 |
|
kallisto
|
kallisto: 0.50.0 -> 0.50.1
|
2023-11-02 11:02:00 +00:00 |
|
kent
|
perlPackages.BioBigFile: Addressing reviewer change
|
2023-11-21 23:16:39 +01:00 |
|
kssd
|
kssd: enable aarch64-linux support & tests
|
2023-11-03 19:34:28 +09:00 |
|
last
|
last: 1540 -> 1541
|
2024-02-14 15:51:25 +00:00 |
|
macs2
|
macs2: 2.2.8 -> 2.2.9.1
|
2023-08-11 14:45:45 -07:00 |
|
macse
|
|
|
|
mafft
|
mafft: 7.515 -> 7.520
|
2023-04-12 13:28:24 +09:00 |
|
manta
|
|
|
|
megahit
|
megahit: fir gcc-13 build failure
|
2024-02-10 10:26:43 +00:00 |
|
meme-suite
|
|
|
|
messer-slim
|
messer-slim: 4.0.1 -> 4.1
|
2023-12-16 20:13:33 +00:00 |
|
migrate
|
|
|
|
minc-tools
|
|
|
|
minc-widgets
|
|
|
|
minia
|
|
|
|
minimap2
|
minimap2: 2.25 -> 2.26
|
2023-05-03 19:38:48 +00:00 |
|
mmseqs2
|
mmseqs2: 14-7e284 -> 15-6f452
|
2023-11-01 09:19:34 +00:00 |
|
mni_autoreg
|
|
|
|
mrbayes
|
|
|
|
mrtrix
|
mrtrix: unstable-2021-11-25 -> 3.0.4
|
2023-09-06 12:11:38 -04:00 |
|
muscle
|
treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases
|
2023-08-03 16:32:03 +00:00 |
|
N3
|
n3: fix build on darwin
|
2024-01-21 23:22:54 +01:00 |
|
nest
|
nest-mpi: 3.5 -> 3.6
|
2023-09-30 18:54:13 +00:00 |
|
neuron
|
neuron-mpi: 8.2.2 -> 8.2.3
|
2023-09-23 02:33:53 +00:00 |
|
niftyreg
|
|
|
|
niftyseg
|
|
|
|
obitools
|
treewide: replace lib/${python.libPrefix}/site-packages with its shorthand ${python.sitePackages}
|
2024-01-30 19:56:57 +01:00 |
|
octopus
|
various packages: pin boost179
|
2023-07-22 16:54:22 +02:00 |
|
paml
|
paml: refactor
|
2023-07-14 15:08:14 +09:00 |
|
picard-tools
|
picard-tools: 3.1.0 -> 3.1.1
|
2023-11-15 14:35:32 +00:00 |
|
platypus
|
|
|
|
plink-ng
|
|
|
|
poretools
|
poretools: mark as broken
|
2023-12-11 04:28:39 +00:00 |
|
prodigal
|
|
|
|
quast
|
treewide: change pythonForBuild to pythonOnBuildForHost
|
2023-11-05 17:42:12 -08:00 |
|
raxml
|
raxml: 8.2.12 -> 8.2.13
|
2023-10-16 22:16:12 +00:00 |
|
repseek
|
|
|
|
sambamba
|
sambamba: 1.0.0 -> 1.0.1
|
2023-08-25 06:20:00 +00:00 |
|
samblaster
|
|
|
|
samtools
|
samtools: 1.19 -> 1.19.2
|
2024-01-28 12:24:10 -08:00 |
|
seaview
|
|
|
|
seqkit
|
seqkit: 2.6.1 -> 2.7.0
|
2024-02-01 04:24:02 +00:00 |
|
seqtk
|
seqtk: 1.3 -> 1.4
|
2023-05-28 06:48:51 +00:00 |
|
snpeff
|
|
|
|
somatic-sniper
|
|
|
|
sortmerna
|
treewide: replace -DCMAKE_BUILD_TYPE in cmakeFlags with cmakeBuildType
|
2023-09-08 14:18:26 +00:00 |
|
spades
|
SPAdes: fix build
|
2024-01-20 15:28:48 -03:00 |
|
sratoolkit
|
treewide: remove unneeded dots and slashes in sourceRoots
|
2023-08-12 08:29:56 +00:00 |
|
stacks
|
stacks: 2.65 -> 2.66
|
2024-01-24 07:54:36 +00:00 |
|
star
|
treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases
|
2023-08-03 16:32:03 +00:00 |
|
strelka
|
strelka: add aarch64-linux support
|
2023-12-11 13:37:17 +01:00 |
|
subread
|
subread: 2.0.5 -> 2.0.6
|
2023-05-10 22:30:35 +10:00 |
|
sumatools
|
|
|
|
svaba
|
svaba: fix gcc-13 build failure
|
2024-02-11 09:59:19 +00:00 |
|
tandem-aligner
|
treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases
|
2023-08-03 16:32:03 +00:00 |
|
tebreak
|
|
|
|
treemix
|
|
|
|
trf
|
trf: init at 4.09.1
|
2023-03-19 22:25:42 +09:00 |
|
trimal
|
treewide: remove execute bit for non-executable *.nix files
|
2023-10-20 19:55:39 +02:00 |
|
trimmomatic
|
trimmomatic: make deterministic and clean up
|
2024-01-04 21:45:11 +01:00 |
|
truvari
|
truvari: 4.0.0 -> 4.1.0
|
2023-10-07 01:30:27 +09:00 |
|
varscan
|
varscan: 2.4.5 -> 2.4.6
|
2023-04-05 14:55:31 +00:00 |
|
vcftools
|
treewide: remove execute bit for non-executable *.nix files
|
2023-10-20 19:55:39 +02:00 |
|
veryfasttree
|
veryfasttree: 4.0.2 -> 4.0.3
|
2023-09-12 06:13:28 +00:00 |
|
whisper
|
whisper: enable parallel building
|
2024-01-25 19:27:12 +00:00 |
|
xenomapper
|
|
|
