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macs2: 2.2.8 -> 2.2.9.1

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Theodore Ni 2023-08-11 14:45:45 -07:00
parent 0a088cacf8
commit 851d2f6b95
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GPG Key ID: 48B67583BDDD4474
1 changed files with 20 additions and 11 deletions
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31
pkgs/applications/science/biology/macs2/default.nix
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@ -1,31 +1,40 @@
{ lib, python3, fetchPypi }:
{ lib, python3, fetchpatch, fetchPypi }:
python3.pkgs.buildPythonPackage rec {
pname = "macs2";
version = "2.2.8";
version = "2.2.9.1";
format = "pyproject";
src = fetchPypi {
pname = lib.toUpper pname;
inherit version;
hash = "sha256-KgpDasidj4yUoeQQaQA3dg5eN5Ka1xnFRpbnTvhKmOA=";
hash = "sha256-jVa8N/uCP8Y4fXgTjOloQFxUoKjNl3ZoJwX9CYMlLRY=";
};
postPatch = ''
# prevent setup.py from installing numpy
substituteInPlace setup.py \
--replace "subprocess.call([sys.executable, \"-m\", 'pip', 'install', f'numpy{numpy_requires}'],cwd=cwd)" "0"
'';
patches = [
# https://github.com/macs3-project/MACS/pull/590
(fetchpatch {
name = "remove-pip-build-dependency.patch";
url = "https://github.com/macs3-project/MACS/commit/cf95a930daccf9f16e5b9a9224c5a2670cf67939.patch";
hash = "sha256-WB3Ubqk5fKtZt97QYo/sZDU/yya9MUo1NL4VsKXR+Yo=";
})
];
nativeBuildInputs = with python3.pkgs; [
cython
numpy
setuptools
wheel
];
propagatedBuildInputs = with python3.pkgs; [ numpy ];
propagatedBuildInputs = with python3.pkgs; [
numpy
];
nativeCheckInputs = [
python3.pkgs.unittestCheckHook
__darwinAllowLocalNetworking = true;
nativeCheckInputs = with python3.pkgs; [
unittestCheckHook
];
unittestFlagsArray = [