nixpkgs/pkgs/applications/science/biology
2022-09-05 06:55:03 +02:00
..
angsd angsd: init at 0.937 2022-03-04 09:17:35 -06:00
ants
aragorn
astral treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
bayescan bayescan: fix the build 2022-05-13 12:00:08 +02:00
bcftools bcftools: 1.14 -> 1.15 2022-02-25 11:12:05 -08:00
bedops
bedtools
bftools treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
blast blast: 2.12.0 -> 2.13.0 2022-04-29 09:39:10 -05:00
bowtie bowtie: fix build on case insensitive file systems 2022-05-11 03:20:03 -05:00
bowtie2 bowtie2: 2.4.4 -> 2.4.5 2022-01-23 22:45:59 +00:00
bppsuite
bwa bwa: pull upstream fix for -fno-common tollchains 2022-05-08 08:56:43 +01:00
cd-hit
clustal-omega treewide: add meta.mainProgram to many packages 2022-04-14 10:24:01 -07:00
cmtk treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
conglomerate
dcm2niix dcm2niix: support usage of suggested Cloudflare zlib 2022-04-18 15:00:45 -04:00
deeptools deeptools: 3.5.0 -> 3.5.1 2022-01-21 05:36:24 +00:00
delly delly: 0.9.1 -> 1.0.3 2022-07-07 22:10:48 +00:00
diamond maintainers: remove metabar 2022-06-29 00:52:13 +02:00
ecopcr maintainers: remove metabar 2022-06-29 00:52:13 +02:00
eggnog-mapper eggnog-mapper: 1.0.3 -> 2.1.7 2022-03-18 10:26:47 -05:00
emboss
est-sfs
exonerate
EZminc ezminc: mark broken 2022-05-17 10:24:07 -07:00
fastp
febio-studio febio-studio: init at 1.6.1 2022-02-21 16:43:36 +01:00
flywheel-cli treewide/applications: add sourceType binaryNativeCode for many packages 2022-06-23 18:38:19 +01:00
freebayes freebayes: add -fcommon workaround 2022-05-14 13:19:17 +01:00
genmap
hisat2 hisat2: update homepage 2022-02-06 15:10:53 +01:00
hmmer
igv
inormalize
itsx
iv
kallisto kallisto: 0.46.2 -> 0.48.0 2022-01-31 09:53:54 -08:00
kent
kssd kssd: pull upstream fix for -fno-common tollchains 2022-05-21 11:22:53 +01:00
last last: 1260 -> 1268 2022-03-02 13:35:56 +11:00
MACS2 MACS2: mark broken 2022-06-06 11:46:22 -07:00
macse treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
mafft mafft: 7.487 -> 7.490 2022-02-22 21:35:45 +09:00
manta
megahit Static build for megahit 2022-05-04 02:13:31 +02:00
meme-suite
messer-slim messer-slim: 3.7 -> 3.7.1 2022-02-14 00:46:29 +00:00
migrate treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
minc-tools
minc-widgets
minia
minimap2 minimap2: enable aarch64 builds (#161169) 2022-03-04 12:27:29 +01:00
mni_autoreg mni_autoreg: pull upstream workaround for -fno-common toolchains 2022-05-22 14:37:30 +01:00
mosdepth mosdepth: 0.3.2 -> 0.3.3 2022-02-12 14:31:47 +00:00
mrbayes
mrtrix treewide: pkgs/applications: mark broken for aarch64-linux 2022-05-30 13:42:58 +02:00
muscle treewide: pkgs/applications: mark broken for aarch64-linux 2022-05-30 13:42:58 +02:00
N3
neuron treewide/python-modules: add sourceProvenance for several packages 2022-06-20 09:43:10 +02:00
niftyreg
niftyseg
obitools
octopus
paml paml: add -fcommon workaround 2022-05-22 20:23:12 +01:00
picard-tools treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
platypus
plink-ng treewide: pkgs/applications: mark broken for aarch64-linux 2022-05-30 13:42:58 +02:00
poretools python,pythonPackages: make aliases 2022-01-16 18:39:59 +00:00
prodigal
quast treewide/applications: add sourceType binaryNativeCode for many packages 2022-06-23 18:38:19 +01:00
raxml raxml-mpi: remove appendToName to have a consistent package name for repology 2022-02-28 12:46:15 +01:00
repseek repseek: init at 9Sep2014 (#148017) 2022-01-31 14:59:32 +01:00
sambamba sambamba: 0.8.1 -> 0.8.2 (#155972) 2022-01-23 04:51:46 +01:00
samblaster
samtools Static build for samtools 2022-05-04 02:16:17 +02:00
seaview
snpeff treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
somatic-sniper
sortmerna
spades SPAdes: 3.15.3 -> 3.15.4 2022-02-18 00:55:34 +01:00
stacks stacks: 2.59 -> 2.60 2022-01-02 19:23:58 +01:00
star star: 2.7.9a -> 2.7.10a 2022-01-24 19:51:44 +01:00
strelka
subread treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
sumatools
svaba Merge pull request #175259 from trofi/workaround-fno-common-for-svaba 2022-06-03 05:59:16 +00:00
tebreak treewide: remove nativeBuildInputs that are in stdenv 2022-04-16 21:46:46 +03:00
treemix treemix: init at 1.13 2022-09-05 06:55:03 +02:00
trimal
truvari
varscan treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
vcftools
whisper treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
xenomapper python3Packages.xenomapper: move to top-level 2022-01-01 02:09:11 +01:00