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angsd
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angsd: pull patch pending upstream inclusion for parallel build fix
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2023-08-20 08:50:53 +01:00 |
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ants
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ants: 2.5.0 -> 2.5.1
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2024-01-26 01:12:12 +01:00 |
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aragorn
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aragorn: fix format
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2023-06-08 18:42:29 +09:00 |
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astral
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bamtools
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bamtools: init at 2.5.2
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2023-08-18 00:17:15 +09:00 |
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bayescan
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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bcftools
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bcftools: 1.18 -> 1.19
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2023-12-13 06:48:21 +00:00 |
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bedops
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bedops: fix build on darwin
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2023-04-24 22:11:47 +09:00 |
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bedtools
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bedtools: 2.31.0 -> 2.31.1
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2023-11-09 06:18:08 +00:00 |
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bftools
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bioawk
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bioawk: init at unstable-2017-09-11
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2023-08-18 00:36:09 +09:00 |
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blast
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blast-bin: add sourceProvenance to meta
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2023-10-07 10:12:24 +09:00 |
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bowtie
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treewide:replace http by https when https is a permanent redirection
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2023-02-19 21:47:59 +01:00 |
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bowtie2
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bowtie2: 2.5.2 -> 2.5.3
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2024-01-18 01:41:31 +00:00 |
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bppsuite
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bppsuite: fix homepage
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2023-06-15 12:18:11 -04:00 |
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bwa
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bwa: add runHook
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2023-05-15 16:13:49 +09:00 |
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bwa-mem2
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bwa-mem2: init at version 2.2.1
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2023-08-23 15:02:06 -07:00 |
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cd-hit
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clustal-omega
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cmtk
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cmtk: fix format
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2023-07-11 17:50:47 +09:00 |
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conglomerate
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dcm2niix
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dcm2niix: 1.0.20211006 -> 1.0.20230411
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2024-02-07 16:11:03 +10:00 |
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deeptools
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deeptools: fix build
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2024-01-28 12:17:37 -08:00 |
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delly
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delly: 1.1.8 -> 1.2.6
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2023-12-22 18:36:25 +00:00 |
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diamond
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diamond: 2.1.8 -> 2.1.9
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2024-02-01 04:22:08 +00:00 |
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dssp
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dssp: 4.4.4.1 -> 4.4.5
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2023-11-24 22:34:06 +09:00 |
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ecopcr
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eggnog-mapper
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eggnog-mapper: 2.1.10 -> 2.1.12
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2024-01-18 19:17:47 +00:00 |
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emboss
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est-sfs
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exonerate
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EZminc
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fastp
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fastp: 0.23.3 -> 0.23.4
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2023-06-04 03:21:21 +00:00 |
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febio-studio
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treewide: make ffmpeg_4-dependant packages depend on ffmpeg_4
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2023-03-13 16:42:22 -06:00 |
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flywheel-cli
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treewide: s_targetPlatform_hostPlatform_ in non-compiler packages
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2023-11-17 08:07:34 +00:00 |
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freebayes
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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gatk
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gatk: 4.4.0.0 -> 4.5.0.0
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2023-12-15 04:20:42 +00:00 |
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genmap
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hh-suite
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hh-suite: fix build on GCC 13
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2024-02-08 21:54:47 +00:00 |
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hisat2
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hmmer
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hmmer: add changelog to meta
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2023-09-24 04:24:00 +00:00 |
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igv
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igv: 2.17.1 -> 2.17.2
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2024-02-10 06:01:14 +00:00 |
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inormalize
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inormalize: fix build on darwin
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2024-01-21 23:26:55 +01:00 |
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iqtree
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iqtree: 2.2.2.6 -> 2.2.2.7
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2023-08-25 12:25:13 +00:00 |
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itsx
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iv
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jbrowse
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jbrowse: init at 2.5.0
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2023-05-12 11:24:26 -07:00 |
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kalign
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kalign: 3.3.5 -> 3.4.0
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2023-12-11 06:26:11 +00:00 |
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kallisto
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kallisto: 0.50.0 -> 0.50.1
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2023-11-02 11:02:00 +00:00 |
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kent
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perlPackages.BioBigFile: Addressing reviewer change
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2023-11-21 23:16:39 +01:00 |
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kssd
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kssd: enable aarch64-linux support & tests
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2023-11-03 19:34:28 +09:00 |
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last
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last: 1541 -> 1542
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2024-02-19 07:08:37 +00:00 |
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macs2
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macs2: 2.2.8 -> 2.2.9.1
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2023-08-11 14:45:45 -07:00 |
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macse
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mafft
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mafft: 7.515 -> 7.520
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2023-04-12 13:28:24 +09:00 |
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manta
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megahit
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megahit: fir gcc-13 build failure
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2024-02-10 10:26:43 +00:00 |
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meme-suite
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messer-slim
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messer-slim: 4.0.1 -> 4.1
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2023-12-16 20:13:33 +00:00 |
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migrate
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minc-tools
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minc-widgets
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inormalize/minc-widgets/gimp-plugins: use pname & version
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2023-02-12 22:21:44 +01:00 |
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minia
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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minimap2
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minimap2: 2.25 -> 2.26
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2023-05-03 19:38:48 +00:00 |
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mmseqs2
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mmseqs2: 14-7e284 -> 15-6f452
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2023-11-01 09:19:34 +00:00 |
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mni_autoreg
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mrbayes
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mrtrix
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mrtrix: unstable-2021-11-25 -> 3.0.4
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2023-09-06 12:11:38 -04:00 |
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muscle
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treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases
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2023-08-03 16:32:03 +00:00 |
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N3
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n3: fix build on darwin
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2024-01-21 23:22:54 +01:00 |
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nest
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nest-mpi: 3.5 -> 3.6
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2023-09-30 18:54:13 +00:00 |
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neuron
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neuron-mpi: 8.2.2 -> 8.2.3
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2023-09-23 02:33:53 +00:00 |
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niftyreg
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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niftyseg
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obitools
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treewide: replace lib/${python.libPrefix}/site-packages with its shorthand ${python.sitePackages}
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2024-01-30 19:56:57 +01:00 |
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octopus
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octopus-caller: fix gcc-13 build failure (drop -Werror)
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2024-02-20 09:39:27 +00:00 |
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paml
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paml: refactor
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2023-07-14 15:08:14 +09:00 |
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picard-tools
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picard-tools: 3.1.0 -> 3.1.1
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2023-11-15 14:35:32 +00:00 |
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platypus
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plink-ng
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treewide: use optionalString
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2023-02-13 21:52:34 +01:00 |
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poretools
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poretools: mark as broken
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2023-12-11 04:28:39 +00:00 |
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prodigal
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quast
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treewide: change pythonForBuild to pythonOnBuildForHost
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2023-11-05 17:42:12 -08:00 |
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raxml
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raxml: 8.2.12 -> 8.2.13
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2023-10-16 22:16:12 +00:00 |
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repseek
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sambamba
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sambamba: 1.0.0 -> 1.0.1
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2023-08-25 06:20:00 +00:00 |
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samblaster
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samtools
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samtools: 1.19 -> 1.19.2
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2024-01-28 12:24:10 -08:00 |
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seaview
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treewide:replace http by https when https is a permanent redirection
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2023-02-19 21:47:59 +01:00 |
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seqkit
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seqkit: 2.6.1 -> 2.7.0
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2024-02-01 04:24:02 +00:00 |
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seqtk
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seqtk: 1.3 -> 1.4
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2023-05-28 06:48:51 +00:00 |
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snpeff
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somatic-sniper
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sortmerna
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sortmerna: fix gcc-13 build
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2024-02-25 07:49:10 +00:00 |
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spades
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SPAdes: fix build
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2024-01-20 15:28:48 -03:00 |
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sratoolkit
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treewide: remove unneeded dots and slashes in sourceRoots
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2023-08-12 08:29:56 +00:00 |
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stacks
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stacks: 2.65 -> 2.66
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2024-01-24 07:54:36 +00:00 |
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star
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treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases
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2023-08-03 16:32:03 +00:00 |
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strelka
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strelka: add aarch64-linux support
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2023-12-11 13:37:17 +01:00 |
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subread
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subread: 2.0.5 -> 2.0.6
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2023-05-10 22:30:35 +10:00 |
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sumatools
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svaba
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svaba: fix gcc-13 build failure
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2024-02-11 09:59:19 +00:00 |
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tandem-aligner
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treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases
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2023-08-03 16:32:03 +00:00 |
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tebreak
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treemix
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trf
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trf: init at 4.09.1
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2023-03-19 22:25:42 +09:00 |
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trimal
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treewide: remove execute bit for non-executable *.nix files
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2023-10-20 19:55:39 +02:00 |
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trimmomatic
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trimmomatic: make deterministic and clean up
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2024-01-04 21:45:11 +01:00 |
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truvari
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truvari: 4.0.0 -> 4.1.0
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2023-10-07 01:30:27 +09:00 |
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varscan
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varscan: 2.4.5 -> 2.4.6
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2023-04-05 14:55:31 +00:00 |
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vcftools
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treewide: remove execute bit for non-executable *.nix files
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2023-10-20 19:55:39 +02:00 |
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veryfasttree
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veryfasttree: 4.0.2 -> 4.0.3
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2023-09-12 06:13:28 +00:00 |
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whisper
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whisper: enable parallel building
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2024-01-25 19:27:12 +00:00 |
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xenomapper
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