nixpkgs/pkgs/applications/science/biology
2022-12-08 04:35:53 +01:00
..
angsd angsd: 0.938 -> 0.940 2022-10-14 14:50:26 +00:00
ants ants: 2.4.1 -> 2.4.2 2022-10-19 09:19:31 +08:00
aragorn
astral treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
bayescan bayescan: fix the build 2022-05-13 12:00:08 +02:00
bcftools bcftools: 1.15 -> 1.16 2022-08-18 18:44:42 +00:00
bedops bedops: 2.4.40 -> 2.4.41 2022-07-19 09:09:52 +10:00
bedtools
bftools treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
blast blast: 2.12.0 -> 2.13.0 2022-04-29 09:39:10 -05:00
bowtie bowtie: fix build on case insensitive file systems 2022-05-11 03:20:03 -05:00
bowtie2
bppsuite
bwa bwa: pull upstream fix for -fno-common tollchains 2022-05-08 08:56:43 +01:00
cd-hit
clustal-omega treewide: add meta.mainProgram to many packages 2022-04-14 10:24:01 -07:00
cmtk treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
conglomerate
dcm2niix dcm2niix: support usage of suggested Cloudflare zlib 2022-04-18 15:00:45 -04:00
deeptools
delly delly: 1.1.5 -> 1.1.6 2022-11-08 18:21:37 +00:00
diamond diamond: update metadata 2022-07-13 12:33:33 +02:00
dssp dssp: init at 4.0.5 2022-07-19 12:17:34 +09:00
ecopcr ecopcr: 0.8.0 -> 1.0.1 2022-12-08 04:35:53 +01:00
eggnog-mapper eggnog-mapper: 2.1.7 -> 2.1.9 2022-08-21 12:45:21 +00:00
emboss
est-sfs
exonerate
EZminc EZminc: itk4 -> itk (formally; package is broken) 2022-09-04 13:36:24 -04:00
fastp
febio-studio
flywheel-cli treewide/applications: add sourceType binaryNativeCode for many packages 2022-06-23 18:38:19 +01:00
freebayes freebayes: add -fcommon workaround 2022-05-14 13:19:17 +01:00
gatk gatk: 4.2.6.1 -> 4.3.0.0 2022-10-16 21:48:30 +08:00
genmap
hisat2
hmmer
igv igv: 2.14.1 -> 2.15.1 2022-11-20 14:06:29 +08:00
inormalize
iqtree iqtree: init at 2.2.0.4 2022-05-30 10:53:40 +02:00
itsx
iv
kallisto
kent
kssd kssd: pull upstream fix for -fno-common tollchains 2022-05-21 11:22:53 +01:00
last last: 1409 -> 1411 2022-09-21 08:24:01 +00:00
MACS2 MACS2: mark broken 2022-06-06 11:46:22 -07:00
macse treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
mafft mafft: 7.505 -> 7.508 2022-09-09 13:26:38 +09:00
manta
megahit treewide: optional -> optionals where the argument is a list 2022-10-10 15:40:21 +03:00
meme-suite pkgs.applications: remove unused args 2022-10-12 16:00:16 +02:00
messer-slim messer-slim: 4.0 -> 4.0.1 2022-09-15 22:25:51 +00:00
migrate treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
minc-tools
minc-widgets
minia
minimap2
mmseqs2 mmseqs2: init at 14-7e284 2022-10-31 23:49:10 +09:00
mni_autoreg mni_autoreg: unstable-2017-02-22 -> unstable-2022-05-20 2022-07-26 16:03:12 -04:00
mosdepth
mrbayes
mrtrix treewide: pkgs/applications: mark broken for aarch64-linux 2022-05-30 13:42:58 +02:00
muscle muscle: add myself to maintainers 2022-11-22 20:19:17 +01:00
N3
neuron treewide: optional -> optionals where the argument is a list 2022-10-10 15:40:21 +03:00
niftyreg
niftyseg
obitools
octopus octopus-caller: backport patch to fix build 2022-10-25 09:52:28 +11:00
paml paml: add -fcommon workaround 2022-05-22 20:23:12 +01:00
picard-tools picard-tools: 2.26.11 -> 2.27.4 2022-07-29 16:12:10 +00:00
platypus
plink-ng treewide: pkgs/applications: mark broken for aarch64-linux 2022-05-30 13:42:58 +02:00
poretools
prodigal
quast treewide/applications: add sourceType binaryNativeCode for many packages 2022-06-23 18:38:19 +01:00
raxml
repseek
sambamba sambamba: fix compilation on Darwin, cleanup installPhase 2022-10-23 16:12:47 +02:00
samblaster
samtools treewide: optional -> optionals where the argument is a list 2022-10-10 15:40:21 +03:00
seaview
seqkit seqkit: init at 2.3.1 2022-11-04 08:51:32 +01:00
seqtk seqtk: init at 1.3 2022-09-25 19:55:58 -04:00
snpeff treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
somatic-sniper
sortmerna pkgs.applications: remove unused args 2022-10-12 16:00:16 +02:00
spades Merge pull request #184694 from r-ryantm/auto-update/SPAdes 2022-08-23 20:21:42 +02:00
stacks
star
strelka
subread treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
sumatools
svaba Merge pull request #175259 from trofi/workaround-fno-common-for-svaba 2022-06-03 05:59:16 +00:00
tebreak treewide: remove nativeBuildInputs that are in stdenv 2022-04-16 21:46:46 +03:00
treemix treemix: init at 1.13 2022-09-05 06:55:03 +02:00
trimal
truvari
varscan treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
vcftools treewide: move pkg-config, autoreconfHook, intltool to nativeBuildInputs 2022-09-26 17:53:26 +03:00
veryfasttree veryfasttree: init at 3.1.1 2022-11-22 20:45:45 +01:00
whisper treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
xenomapper