nixpkgs/pkgs/applications/science/biology
2023-09-01 15:30:29 +10:00
..
angsd pkgs/applications: replace "${version}" with version 2023-07-02 14:39:50 -04:00
ants ants: 2.4.3 -> 2.4.4 2023-05-02 12:29:21 -04:00
aragorn aragorn: fix format 2023-06-08 18:42:29 +09:00
astral
bamtools bamtools: init at 2.5.2 2023-08-18 00:17:15 +09:00
bayescan treewide: move NIX_CFLAGS_COMPILE to the env attrset 2023-02-22 21:23:04 +02:00
bcftools bcftools: 1.17 -> 1.18 2023-08-01 03:38:31 +00:00
bedops bedops: fix build on darwin 2023-04-24 22:11:47 +09:00
bedtools bedtools: 2.30.0 -> 2.31.0 2023-04-29 03:05:55 +00:00
bftools
blast blast: 2.13.0 -> 2.14.0 2023-05-26 00:23:49 +00:00
bowtie treewide:replace http by https when https is a permanent redirection 2023-02-19 21:47:59 +01:00
bowtie2 bowtie2: 2.4.5 -> 2.5.1 2023-01-21 21:19:00 +00:00
bppsuite bppsuite: fix homepage 2023-06-15 12:18:11 -04:00
bwa bwa: add runHook 2023-05-15 16:13:49 +09:00
bwa-mem2 bwa-mem2: init at version 2.2.1 2023-08-23 15:02:06 -07:00
cd-hit
clustal-omega
cmtk cmtk: fix format 2023-07-11 17:50:47 +09:00
conglomerate
dcm2niix treewide: Rename libyamlcpp* to yaml-cpp* 2023-01-31 16:22:54 +01:00
deeptools treewide: switch to nativeCheckInputs 2023-01-21 12:00:00 +00:00
delly delly: enable openmp 2023-07-14 00:20:20 +09:00
diamond diamond: 2.1.7 -> 2.1.8 2023-06-25 04:35:30 +00:00
dssp dssp: 4.3.1 -> 4.4.2 2023-07-23 21:24:23 +09:00
ecopcr ecopcr: 0.8.0 -> 1.0.1 2022-12-08 04:35:53 +01:00
eggnog-mapper eggnog-mapper: 2.1.9 -> 2.1.10 2023-02-11 08:43:59 +00:00
emboss treewide: replace http by https when https is a permanent redirection 2023-01-22 02:46:49 +01:00
est-sfs
exonerate
EZminc
fastp fastp: 0.23.3 -> 0.23.4 2023-06-04 03:21:21 +00:00
febio-studio treewide: make ffmpeg_4-dependant packages depend on ffmpeg_4 2023-03-13 16:42:22 -06:00
flywheel-cli
freebayes treewide: move NIX_CFLAGS_COMPILE to the env attrset 2023-02-22 21:23:04 +02:00
gatk gatk: 4.3.0.0 -> 4.4.0.0 2023-03-18 01:10:14 +00:00
genmap treewide: switch to nativeCheckInputs 2023-01-21 12:00:00 +00:00
hh-suite hh-suite: init at 3.3.0 2023-04-19 10:32:35 +09:00
hisat2
hmmer
igv igv: 2.16.0 -> 2.16.1 2023-05-31 13:33:15 +00:00
inormalize inormalize/minc-widgets/gimp-plugins: use pname & version 2023-02-12 22:21:44 +01:00
iqtree iqtree: 2.2.2.6 -> 2.2.2.7 2023-08-25 12:25:13 +00:00
itsx
iv
jbrowse jbrowse: init at 2.5.0 2023-05-12 11:24:26 -07:00
kalign kalign: init at 3.3.5 2023-06-14 21:05:58 +09:00
kallisto kallisto: 0.48.0 -> 0.50.0 2023-07-09 17:19:43 +00:00
kent kent: package headers too. 2023-05-06 19:48:14 +02:00
kssd
last last: 1460 -> 1471 2023-08-18 14:11:53 +10:00
macs2 macs2: 2.2.8 -> 2.2.9.1 2023-08-11 14:45:45 -07:00
macse
mafft mafft: 7.515 -> 7.520 2023-04-12 13:28:24 +09:00
manta
megahit
meme-suite
messer-slim
migrate
minc-tools
minc-widgets inormalize/minc-widgets/gimp-plugins: use pname & version 2023-02-12 22:21:44 +01:00
minia treewide: move NIX_CFLAGS_COMPILE to the env attrset 2023-02-22 21:23:04 +02:00
minimap2 minimap2: 2.25 -> 2.26 2023-05-03 19:38:48 +00:00
mmseqs2
mni_autoreg
mosdepth mosdepth: build with Nim-2 2023-08-21 07:32:46 +01:00
mrbayes
mrtrix treewide: switch to nativeCheckInputs 2023-01-21 12:00:00 +00:00
muscle treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases 2023-08-03 16:32:03 +00:00
N3
nest nest-mpi: 3.4 -> 3.5 2023-07-08 16:03:30 +00:00
neuron treewide: fix lints 2023-03-11 00:55:17 +02:00
niftyreg treewide: move NIX_CFLAGS_COMPILE to the env attrset 2023-02-22 21:23:04 +02:00
niftyseg
obitools
octopus various packages: pin boost179 2023-07-22 16:54:22 +02:00
paml paml: refactor 2023-07-14 15:08:14 +09:00
picard-tools picard-tools: 3.0.0 -> 3.1.0 2023-08-02 22:03:03 +00:00
platypus
plink-ng treewide: use optionalString 2023-02-13 21:52:34 +01:00
poretools
prodigal
quast treewide: python{ => .pythonForBuild}.interpreter 2023-02-26 20:26:17 +00:00
raxml
repseek
sambamba sambamba: 1.0.0 -> 1.0.1 2023-08-25 06:20:00 +00:00
samblaster
samtools samtools: 1.17 -> 1.18 2023-08-07 01:22:06 +00:00
seaview treewide:replace http by https when https is a permanent redirection 2023-02-19 21:47:59 +01:00
seqkit seqkit: 2.5.0 -> 2.5.1 2023-08-10 04:42:38 +00:00
seqtk seqtk: 1.3 -> 1.4 2023-05-28 06:48:51 +00:00
snpeff treewide: replace http by https when https is a permanent redirection 2023-01-22 02:46:49 +01:00
somatic-sniper
sortmerna
spades
sratoolkit treewide: remove unneeded dots and slashes in sourceRoots 2023-08-12 08:29:56 +00:00
stacks stacks: 2.60 -> 2.62 2023-02-06 21:36:49 +01:00
star treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases 2023-08-03 16:32:03 +00:00
strelka treewide: move NIX_CFLAGS_COMPILE to the env attrset 2023-02-22 21:23:04 +02:00
subread subread: 2.0.5 -> 2.0.6 2023-05-10 22:30:35 +10:00
sumatools
svaba treewide: move NIX_CFLAGS_COMPILE to the env attrset 2023-02-22 21:23:04 +02:00
tandem-aligner treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases 2023-08-03 16:32:03 +00:00
tebreak
treemix
trf trf: init at 4.09.1 2023-03-19 22:25:42 +09:00
trimal
truvari truvari: add patches to fix truvari anno 2023-05-15 10:01:38 +09:00
varscan varscan: 2.4.5 -> 2.4.6 2023-04-05 14:55:31 +00:00
vcftools
veryfasttree veryfasttree: use finalAttrs pattern 2023-08-02 18:51:11 +02:00
whisper
xenomapper