| .. |
|
angsd
|
|
|
|
ants
|
|
|
|
aragorn
|
|
|
|
astral
|
treewide: set sourceProvenance for packages containing downloaded jars
|
2022-06-04 19:47:57 +01:00 |
|
bayescan
|
bayescan: fix the build
|
2022-05-13 12:00:08 +02:00 |
|
bcftools
|
|
|
|
bedops
|
bedops: 2.4.40 -> 2.4.41
|
2022-07-19 09:09:52 +10:00 |
|
bedtools
|
|
|
|
bftools
|
treewide: set sourceProvenance for packages containing downloaded jars
|
2022-06-04 19:47:57 +01:00 |
|
blast
|
blast: 2.12.0 -> 2.13.0
|
2022-04-29 09:39:10 -05:00 |
|
bowtie
|
bowtie: fix build on case insensitive file systems
|
2022-05-11 03:20:03 -05:00 |
|
bowtie2
|
|
|
|
bppsuite
|
|
|
|
bwa
|
bwa: pull upstream fix for -fno-common tollchains
|
2022-05-08 08:56:43 +01:00 |
|
cd-hit
|
|
|
|
clustal-omega
|
treewide: add meta.mainProgram to many packages
|
2022-04-14 10:24:01 -07:00 |
|
cmtk
|
treewide: pkgs/applications: mark broken for darwin
|
2022-05-29 10:56:04 +02:00 |
|
conglomerate
|
|
|
|
dcm2niix
|
dcm2niix: support usage of suggested Cloudflare zlib
|
2022-04-18 15:00:45 -04:00 |
|
deeptools
|
|
|
|
delly
|
delly: 0.9.1 -> 1.0.3
|
2022-07-07 22:10:48 +00:00 |
|
diamond
|
maintainers: remove metabar
|
2022-06-29 00:52:13 +02:00 |
|
dssp
|
dssp: init at 4.0.5
|
2022-07-19 12:17:34 +09:00 |
|
ecopcr
|
maintainers: remove metabar
|
2022-06-29 00:52:13 +02:00 |
|
eggnog-mapper
|
|
|
|
emboss
|
|
|
|
est-sfs
|
|
|
|
exonerate
|
|
|
|
EZminc
|
ezminc: mark broken
|
2022-05-17 10:24:07 -07:00 |
|
fastp
|
|
|
|
febio-studio
|
|
|
|
flywheel-cli
|
treewide/applications: add sourceType binaryNativeCode for many packages
|
2022-06-23 18:38:19 +01:00 |
|
freebayes
|
freebayes: add -fcommon workaround
|
2022-05-14 13:19:17 +01:00 |
|
genmap
|
|
|
|
hisat2
|
|
|
|
hmmer
|
|
|
|
igv
|
igv: 2.8.13 -> 2.13.2
|
2022-08-07 17:53:06 +02:00 |
|
inormalize
|
|
|
|
itsx
|
|
|
|
iv
|
|
|
|
kallisto
|
|
|
|
kent
|
|
|
|
kssd
|
kssd: pull upstream fix for -fno-common tollchains
|
2022-05-21 11:22:53 +01:00 |
|
last
|
last: 1268 -> 1406
|
2022-07-31 16:58:20 +00:00 |
|
MACS2
|
MACS2: mark broken
|
2022-06-06 11:46:22 -07:00 |
|
macse
|
treewide: set sourceProvenance for packages containing downloaded jars
|
2022-06-04 19:47:57 +01:00 |
|
mafft
|
mafft: 7.490 -> 7.505
|
2022-07-31 20:32:57 +00:00 |
|
manta
|
|
|
|
megahit
|
Static build for megahit
|
2022-05-04 02:13:31 +02:00 |
|
meme-suite
|
|
|
|
messer-slim
|
|
|
|
migrate
|
treewide: pkgs/applications: mark broken for darwin
|
2022-05-29 10:56:04 +02:00 |
|
minc-tools
|
|
|
|
minc-widgets
|
|
|
|
minia
|
|
|
|
minimap2
|
|
|
|
mni_autoreg
|
mni_autoreg: pull upstream workaround for -fno-common toolchains
|
2022-05-22 14:37:30 +01:00 |
|
mosdepth
|
|
|
|
mrbayes
|
|
|
|
mrtrix
|
treewide: pkgs/applications: mark broken for aarch64-linux
|
2022-05-30 13:42:58 +02:00 |
|
muscle
|
treewide: pkgs/applications: mark broken for aarch64-linux
|
2022-05-30 13:42:58 +02:00 |
|
N3
|
|
|
|
neuron
|
treewide/python-modules: add sourceProvenance for several packages
|
2022-06-20 09:43:10 +02:00 |
|
niftyreg
|
|
|
|
niftyseg
|
|
|
|
obitools
|
|
|
|
octopus
|
|
|
|
paml
|
paml: add -fcommon workaround
|
2022-05-22 20:23:12 +01:00 |
|
picard-tools
|
treewide: set sourceProvenance for packages containing downloaded jars
|
2022-06-04 19:47:57 +01:00 |
|
platypus
|
|
|
|
plink-ng
|
treewide: pkgs/applications: mark broken for aarch64-linux
|
2022-05-30 13:42:58 +02:00 |
|
poretools
|
|
|
|
prodigal
|
|
|
|
quast
|
treewide/applications: add sourceType binaryNativeCode for many packages
|
2022-06-23 18:38:19 +01:00 |
|
raxml
|
|
|
|
repseek
|
|
|
|
sambamba
|
|
|
|
samblaster
|
|
|
|
samtools
|
samtools: Fix cross-compilation
|
2022-08-02 17:52:50 +02:00 |
|
seaview
|
|
|
|
snpeff
|
treewide: set sourceProvenance for packages containing downloaded jars
|
2022-06-04 19:47:57 +01:00 |
|
somatic-sniper
|
|
|
|
sortmerna
|
|
|
|
spades
|
treewide: fix platforms
|
2022-08-01 18:33:27 +02:00 |
|
stacks
|
|
|
|
star
|
|
|
|
strelka
|
|
|
|
subread
|
treewide: pkgs/applications: mark broken for darwin
|
2022-05-29 10:56:04 +02:00 |
|
sumatools
|
|
|
|
svaba
|
Merge pull request #175259 from trofi/workaround-fno-common-for-svaba
|
2022-06-03 05:59:16 +00:00 |
|
tebreak
|
treewide: remove nativeBuildInputs that are in stdenv
|
2022-04-16 21:46:46 +03:00 |
|
trimal
|
|
|
|
truvari
|
|
|
|
varscan
|
treewide: set sourceProvenance for packages containing downloaded jars
|
2022-06-04 19:47:57 +01:00 |
|
vcftools
|
|
|
|
whisper
|
treewide: pkgs/applications: mark broken for darwin
|
2022-05-29 10:56:04 +02:00 |
|
xenomapper
|
|
|
