Artturi
59fa516ce8
Merge pull request #189142 from alexvorobiev/mkl-install
...
Use cp instead of install to preserve symlinks in MKL
2022-09-04 02:37:17 +03:00
R. Ryantm
12a9446c6e
suitesparse: 5.11.0 -> 5.13.0
2022-09-03 16:54:37 +02:00
Alex Vorobiev
a40ff9e1b7
mkl: use cp instead of install to preserve symlinks
2022-09-01 17:44:14 +00:00
Sandro
1a9d22934c
Merge pull request #188490 from risicle/ris-openblas-passthru-tests
2022-08-28 23:29:54 +02:00
Sandro
d9a66fb6ce
Merge pull request #188671 from r-ryantm/auto-update/htslib
2022-08-28 20:34:26 +02:00
R. Ryantm
51064f5bff
htslib: 1.15 -> 1.16
2022-08-28 17:50:54 +00:00
Robert Scott
07be352bfe
openblas: add some key reverse dependencies to passthru.tests
2022-08-27 12:17:02 +01:00
Samuel Ainsworth
8382e78fdb
cudaPackages.cudnn: migrate to hash and SRI hashes
2022-08-27 01:40:33 +00:00
Samuel Ainsworth
36342ac7ad
Merge pull request #172786 from danielfullmer/cudnn-src
...
cudaPackages.cudnn: fix source fetching
2022-08-26 18:35:01 -07:00
Theodore Ni
b71a9802d7
arpack: reenable stackprotector on aarch64-darwin
...
The original error that required disabling the stack protector on
aarch64-darwin has been fixed in GCC
2022-08-25 19:19:42 -07:00
Sandro
71df9f98fc
Merge pull request #186878 from gdinh/libamplsolver-darwin
2022-08-24 21:13:48 +02:00
Grace Dinh
a4f0975a2c
ipopt: build with AMPL by default on darwin
2022-08-23 15:19:22 -07:00
Grace Dinh
e3b3156995
libamplsolver: add darwin support
2022-08-23 15:18:45 -07:00
Jonas Heinrich
04a61701e5
Merge pull request #183388 from r-ryantm/auto-update/indilib
...
indilib: 1.9.5 -> 1.9.6
2022-08-23 23:39:59 +02:00
R. Ryantm
8ccab1a56d
wcslib: 7.9 -> 7.11
2022-08-23 22:22:40 +02:00
Jonas Heinrich
84029a8421
Merge pull request #184231 from r-ryantm/auto-update/ipopt
...
ipopt: 3.14.5 -> 3.14.9
2022-08-21 17:22:13 +02:00
Sebastián Mancilla
4cedb9c92d
Merge pull request #184054 from r-ryantm/auto-update/stellarsolver
...
stellarsolver: 2.3 -> 2.4
2022-08-17 11:21:16 -04:00
Jonas Heinrich
f762aaace5
Merge pull request #186018 from r-ryantm/auto-update/suitesparse-graphblas
...
suitesparse-graphblas: 7.1.2 -> 7.2.0
2022-08-13 19:51:28 +02:00
markuskowa
b1d515d7c4
Merge pull request #186209 from gdinh/scalapack-darwin
...
scalapack: add darwin support
2022-08-13 13:53:38 +02:00
Mario Rodas
743d9d4462
Merge pull request #183005 from bcdarwin/ciftilib
...
ciftilib: init at 1.6.0
2022-08-13 01:10:12 -05:00
Martin Weinelt
310e4c722d
Merge pull request #185344 from r-ryantm/auto-update/petsc
2022-08-12 12:10:17 +02:00
Grace Dinh
2464f69c94
scalapack: add gdinh to maintainers
2022-08-12 02:53:09 -07:00
Grace Dinh
fb24dd718f
scalapack: add darwin support
2022-08-12 02:52:03 -07:00
Jonas Heinrich
370e7d9be9
Merge pull request #168197 from SomeoneSerge/faiss
...
faiss: init at 1.7.2
2022-08-11 09:26:49 +02:00
R. Ryantm
2218a37ac0
suitesparse-graphblas: 7.1.2 -> 7.2.0
2022-08-10 23:53:33 +00:00
R. Ryantm
f07a0615ea
openblas: 0.3.20 -> 0.3.21
2022-08-10 21:29:29 +00:00
R. Ryantm
74cf8fa942
petsc: 3.17.3 -> 3.17.4
2022-08-06 02:47:52 +00:00
Samuel Ainsworth
90c505790c
Revert "cudatoolkit_11_7: init at 11.7.0"
2022-08-05 15:12:47 -07:00
Samuel Ainsworth
a53c2775d7
Merge pull request #179912 from dguibert/dg/cudatoolkit_11_7_0
...
cudatoolkit_11_7: init at 11.7.0
2022-08-05 14:45:59 -07:00
Sandro
12a7360426
Merge pull request #178397 from aidalgol/tensorrt
2022-08-05 12:34:09 +02:00
David Guibert
a43d296d12
cudnn: add 8.4.0
2022-08-02 16:20:07 +02:00
David Guibert
b139e331a4
cudatoolkit: add 11.7
2022-08-02 16:20:07 +02:00
Someone Serge
cd43db0c94
python3Packages.faiss: conventional "tests.nix" name
2022-08-02 16:34:08 +03:00
Someone Serge
ad5e59c123
python3Packages.faiss: rm comment about windows
2022-08-02 16:22:32 +03:00
Someone Serge
ad8148a98b
faiss: init at 1.7.2
2022-08-02 16:21:10 +03:00
Bobby Rong
33a73fe0bf
Merge pull request #184067 from r-ryantm/auto-update/suitesparse-graphblas
...
suitesparse-graphblas: 6.2.5 -> 7.1.2
2022-08-02 20:03:33 +08:00
R. Ryantm
861c5d51b5
petsc: 3.17.0 -> 3.17.3
2022-08-01 05:33:59 +00:00
R. Ryantm
8c53477f36
ipopt: 3.14.5 -> 3.14.9
2022-07-31 13:59:21 +00:00
R. Ryantm
058e14ca0f
suitesparse-graphblas: 6.2.5 -> 7.1.2
2022-07-31 02:52:15 +00:00
R. Ryantm
9ffab81e14
stellarsolver: 2.3 -> 2.4
2022-07-31 01:24:03 +00:00
R. Ryantm
0d4a364e48
brial: 1.2.10 -> 1.2.11
2022-07-30 03:33:48 +00:00
Ben Darwin
a821f7c91a
ciftilib: init at 1.6.0
2022-07-29 20:15:56 -04:00
R. Ryantm
c97d875f3d
indilib: 1.9.5 -> 1.9.6
2022-07-28 15:49:14 +00:00
Sebastián Mancilla
fbda5b9059
xcfun: enable on darwin
2022-07-25 19:25:04 -04:00
Robert Scott
9d28e3414b
Merge pull request #182057 from jiegec/arpack-darwin
...
arpack: unbreak on aarch64-darwin
2022-07-21 21:25:27 +01:00
Jiajie Chen
e9c1d81bf3
arpack: unbreak on aarch64-darwin
...
Disable stackprotector on aarch64-darwin.
Fix #140041 .
2022-07-21 08:08:36 +08:00
github-actions[bot]
71fe747e70
Merge master into staging-next
2022-07-18 12:01:55 +00:00
Alexander Kiselyov
c03fbc7db8
p4est: fixed versioning ( #180737 )
2022-07-18 12:21:23 +02:00
Vladimír Čunát
250922fd1e
Merge branch 'master' into staging-next
2022-07-18 08:29:53 +02:00
Sebastián Mancilla
4cef5d576a
stellarsolver: 2.2 -> 2.3
2022-07-16 23:27:57 -04:00
Artturin
83b4764dc3
treewide: fix fallout from 'cmake/setup-hook.sh: Don't skip build-RPATH'
...
f7414e2b3a
2022-07-12 18:25:19 +03:00
Thomas Tuegel
e1e0d5d513
Merge pull request #108496 from knedlsepp/cmake-rpath
...
cmake/setup-hook.sh: Don't skip build-RPATH
2022-07-11 10:18:47 -05:00
Weijia Wang
abe756d691
wcpg: init at 0.9
2022-07-07 18:05:54 +02:00
Josef Kemetmüller
bcd7045998
treewide: Remove now-unneeded LD_LIBRARY_PATH in cmake derivations
...
Since the setting DCMAKE_SKIP_BUILD_RPATH was disabled, we can now run
the checkPhase of cmake derivations without having to tweak the
LD_LIBRARY_PATH anymore.
2022-07-04 03:49:01 +03:00
Aidan Gauland
e28a8e07a6
cudnn: fix incorrect hash
...
Hash mismatch for cudnn_8_3_2 discovered when building
cudaPackages_10_2.tensorrt, which depends on this version of cudnn.
2022-07-02 14:13:36 +12:00
Aidan Gauland
c8fba8254a
tensorrt: support multiple CUDA versions
...
Refactor derivation to pick the version that supports the current CUDA version.
Based on the implementation of the same concept in the cudnn derivation.
2022-07-02 14:12:41 +12:00
Mario Rodas
635a6cb84f
Merge pull request #178308 from collares/m4rie-20200125
...
m4rie: 20200115 -> 20200125
2022-06-24 21:01:34 -05:00
Aidan Gauland
d70b4df686
tensorrt: init at 8.4.0.6
...
Add derivation for TensorRT 8, a high-performance deep learning interface SDK
from NVIDIA, which is at this point non-redistributable. The current version
aldo requires CUDA 11, so this is left out of the cudaPackages_10* scopes.
2022-06-24 13:02:02 +12:00
Mauricio Collares
67b31c0752
m4rie: 20200115 -> 20200125
2022-06-20 11:00:54 +02:00
Robert Scott
07706c46ca
treewide/development: add sourceType binaryNativeCode for more packages
2022-06-17 19:59:09 +01:00
Robert Scott
12eea1c636
treewide/development: add sourceType binaryNativeCode for many packages
...
excluding compilers and interpreters as some new tricks may be
needed to cover their various bootstrapping processes properly
2022-06-16 20:12:04 +01:00
Rick van Schijndel
11ee22d797
treewide: pkgs/development: mark broken for aarch64-linux
2022-05-30 13:42:59 +02:00
Mauricio Collares
4d4ffdeaef
planarity: 3.0.0.5 -> 3.0.2.0
2022-05-27 15:39:43 -07:00
Sergei Trofimovich
de3d4f4369
lrs: 7.0 -> 7.2
...
Among other things fixes build for gcc-10.
2022-05-17 11:33:20 +01:00
AndersonTorres
91621176e0
primecount: 7.2 -> 7.3
2022-05-14 11:01:08 -03:00
AndersonTorres
d488388cfc
primesieve: 7.8 -> 7.9
2022-05-14 10:56:13 -03:00
Daniel Fullmer
75efb82674
cudaPackages.cudnn: fix source fetching
...
Currently, cudaPackages_10_0.cudnn.src does not build, because passing
`hash = null;` to fetchurl causes it to try to fetch in the sandbox,
where it does not have internet access.
2022-05-13 09:45:08 -07:00
Artemis Tosini
8b10b6b0f5
itpp: fix build
2022-05-09 21:59:06 +00:00
Sophie Taylor
419af30452
Enable multithreading for cfitsio ( #168579 )
2022-05-09 01:23:01 +02:00
Bernardo Meurer
e6b94ad07e
Merge pull request #171602 from malob/treewide-mainProgram
...
treewide: add meta.mainProgram to many packages
2022-05-05 18:16:09 -07:00
Rick van Schijndel
b98c8eabad
Merge pull request #170264 from armeenm/remove-caffe2
...
caffe2: remove
2022-05-05 08:15:58 +02:00
Malo Bourgon
9e4be53221
treewide: add meta.mainProgram to some libraries
...
where a single bin is provided and someone might actually want to run it
2022-05-04 18:11:50 -07:00
Luis Pedro Coelho
967a5d7896
Static builds for HTSLIB
...
We need to disable curses support and replace the build and install
phases (otherwise, they expect that *.so files will be present).
2022-05-04 02:15:17 +02:00
Vladimír Čunát
c480cc2895
Merge branch 'master' into staging-next-2022-04-23
2022-04-30 23:02:28 +02:00
R. Ryantm
11f3c386f1
indilib: 1.9.4 -> 1.9.5
2022-04-29 10:34:50 -05:00
Vladimír Čunát
51554cbbdb
Merge branch 'master' into staging-next-2022-04-23
2022-04-27 22:50:17 +02:00
Markus Kowalewski
30bb15868a
scalapack: fix build with gcc-10
2022-04-27 18:57:52 +02:00
github-actions[bot]
f8c265f433
Merge master into staging-next
2022-04-26 06:01:08 +00:00
Armeen Mahdian
af7d06ed59
fenics: use normal pytest
2022-04-25 14:49:01 -05:00
Armeen Mahdian
8ddb45c1d5
caffe2: remove
2022-04-25 09:29:32 -05:00
github-actions[bot]
e31746a7f5
Merge staging-next into staging
2022-04-22 06:01:51 +00:00
7c6f434c
d50fc14d2a
Merge pull request #169598 from armeenm/bump-zn_poly
...
zn_poly: 0.9.1 -> 0.9.2
2022-04-22 03:22:47 +00:00
Armeen Mahdian
7e56a8b18f
zn_poly: 0.9.1 -> 0.9.2
2022-04-21 10:13:10 -05:00
github-actions[bot]
91a1bc431e
Merge staging-next into staging
2022-04-21 12:01:54 +00:00
github-actions[bot]
9eedd2d752
Merge staging-next into staging
2022-04-21 06:01:42 +00:00
Fabián Heredia Montiel
99e4761704
magma: 2.5.4 → 2.6.2
2022-04-20 23:45:20 -05:00
Someone Serge
11ff7da635
nccl: 2.7.8-1 -> 2.12.10-1
2022-04-20 22:54:23 +03:00
github-actions[bot]
7619792b22
Merge staging-next into staging
2022-04-20 00:02:48 +00:00
Serge K
d924de58be
cudaPackages.cudnn: migrate to redist cuda, fix missing zlib ( #168748 )
...
* cudaPackages.cudnn: migrate to redist cudaPackages
* cudaPackages.cudnn: fix missing zlib in rpath
* cudaPackages.cudnn: remove the propagated cudatoolkit
* cudaPackages.cudnn: use autoPatchelfHook
instead of custom find ... -exec ldd | grep routine
mark libcudnn_cnn_infer.so as needed for libcudnn.so on cudnn>=8.0.5
- a hint for autoPatchelf, as an alternative to manually adding $ORIGIN
* cudaPackages.cudnn: use automatic hooks for rpath
as a more common way to use addOpenGLRunpath and autoPatchelf with cudaPackages
* cudaPackages.cudnn: consume individual cuda packages
...since cudnn is part of the cuda package set
- introduces the scary useCudatoolkitRunfile function argument
to discourage usage of the runfile-based cudatoolkit
- instead of the rather hidden useRedist term in let ... in
- repeats cudatoolkit_root pattern after cuda_joined in pytorch &c
(the "toolchain view")
- redist packages are marked optional to support cuda<11.4 where the
attributes for redist packages do not exist
* cudaPackages.cudnn: update to pname+version
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
2022-04-19 20:52:52 +02:00
Thomas Tuegel
12458d25ca
Merge pull request #168777 from markuskowa/upd-lapack
...
lapack-reference: 3.10.0 -> 3.10.1
2022-04-18 09:52:56 -05:00
Ryan Mulligan
3f6f378eaa
Merge pull request #166175 from r-ryantm/auto-update/wcslib
...
wcslib: 7.7 -> 7.9
2022-04-16 17:10:56 -07:00
Markus Kowalewski
5f11f5b0e0
lapack-reference: 3.10.0 -> 3.10.1
2022-04-15 13:53:20 +02:00
Will Dietz
dde5b0ca7a
python3Packages.fenics: fix build, pin to older boost ( #166728 )
...
* python3Packages.fenics: fix build, pin to older boost
Looking at upstream, there are various issues with newer boost.
(At least some of them have been since fixed)
For now, fix the build by using a version of boost that works
with the current version.
Error here was complaining about `std::min_element`,
which is no longer available, apparently, due to newer boost
no longer (transitively) including <algorithm>.
This was added in C++17, so I'm not sure the cmake flag
specifying dolfin built with C++11 makes sense or is used.
Leaving for now :).
* nixos/tests/fenics: fix name of machine/node in script
Still fails for now.
* python3Packages.fenics: fix accidentally changed strings in subst
Looks like in migration to pkg-config this was erroneously
changed from `pkgconfig` (python package, and source string)
to `pkg-config` (nix package name, tool name).
(see 9bb3fccb5b
2022-04-14 19:37:20 -05:00
Someone Serge
711bd6955c
cudaPackages: fix hash mismatch
...
... for cuda=10.1 cudnn=7.6.5
2022-04-11 00:33:56 +03:00
Thiago Kenji Okada
19ef7cb3f4
Merge pull request #167154 from r-ryantm/auto-update/blis
...
blis: 0.8.1 -> 0.9.0
2022-04-09 22:13:43 +01:00
Frederik Rietdijk
1d63f89caa
cudaPackages: overhaul of how we package cuda packages
...
There are many different versions of the `cudatoolkit` and related
cuda packages, and it can be tricky to ensure they remain compatible.
- `cudaPackages` is now a package set with `cudatoolkit`, `cudnn`, `cutensor`, `nccl`, as well as `cudatoolkit` split into smaller packages ("redist");
- expressions should now use `cudaPackages` as parameter instead of the individual cuda packages;
- `makeScope` is now used, so it is possible to use `.overrideScope'` to set e.g. a different `cudnn` version;
- `release-cuda.nix` is introduced to easily evaluate cuda packages using hydra.
2022-04-09 08:50:22 +02:00
R. Ryantm
fd5c6c5cca
petsc: 3.16.5 -> 3.17.0
2022-04-05 17:06:10 +00:00
R. Ryantm
8dfbf3c0f0
blis: 0.8.1 -> 0.9.0
2022-04-04 09:08:53 +00:00
Samuel Ainsworth
03dd3f66fb
nccl: expose cudatoolkit in passthru
2022-04-01 08:01:09 +00:00
Samuel Ainsworth
089dafd170
cutensor: fix cutensor_cudatoolkit_{10,11}
2022-04-01 07:57:56 +00:00
