Commit Graph

1201 Commits

Author SHA1 Message Date
github-actions[bot]
74b6035ad9
Merge staging-next into staging 2022-02-16 12:02:01 +00:00
Sandro
276090bc12
Merge pull request #160025 from Stunkymonkey/metis-pname-version 2022-02-16 11:27:09 +01:00
markuskowa
a2b668d7c0
Merge pull request #158484 from markuskowa/fix-blaslapack
blas/lapack: increase flexibility of wrappers
2022-02-16 09:58:58 +01:00
Mauricio Collares
4ec82c7bab libhomfly: fix pname 2022-02-15 17:29:11 -03:00
Renaud
504157bbe8
Merge pull request #159694 from r-ryantm/auto-update/primesieve
primesieve: 7.7 -> 7.8
2022-02-15 21:26:31 +01:00
Felix Buehler
602c7cb1b9 metis: rename name to pname&version 2022-02-14 19:53:22 +01:00
markuskowa
076b65f004
Merge pull request #159785 from r-ryantm/auto-update/suitesparse-graphblas
suitesparse-graphblas: 4.0.3 -> 6.1.4
2022-02-14 19:15:30 +01:00
markuskowa
4467ce86fa
Merge pull request #159757 from r-ryantm/auto-update/petsc
petsc: 3.16.2 -> 3.16.4
2022-02-14 19:15:07 +01:00
R. Ryantm
54257c4cd0 suitesparse-graphblas: 4.0.3 -> 6.1.4 2022-02-13 08:24:48 +00:00
R. Ryantm
4e19b26c2a petsc: 3.16.2 -> 3.16.4 2022-02-13 06:07:47 +00:00
R. Ryantm
9798f38c85 primesieve: 7.7 -> 7.8 2022-02-12 23:19:17 +00:00
R. Ryantm
41c1049142 openlibm: 0.8.0 -> 0.8.1 2022-02-12 20:42:14 +00:00
Kim Lindberger
c7df3bf58c
Merge pull request #155108 from fedeinthemix/add-xyce-2
Add Xyce 7.4 (second attempt)
2022-02-12 11:34:10 +01:00
Federico Beffa
1d35ac84ee trilinos: init at version 12.12.1
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
                Kim Lindberger <kim.lindberger@gmail.com>
2022-02-12 10:25:47 +01:00
Markus Kowalewski
e1c98c1112
amd-blis: add markuskowa as maintainer 2022-02-11 17:51:39 +01:00
Markus Kowalewski
daccd0e299
lapack-reference: add markuskowa as maintainer 2022-02-11 17:51:39 +01:00
Markus Kowalewski
0a1f86cc87
blas-references: add markuskowa as maintainer 2022-02-11 17:51:39 +01:00
Markus Kowalewski
5815ed0676
blas-reference: use cmake and allow for ILP64 builds 2022-02-11 17:51:39 +01:00
Markus Kowalewski
b15bd66e5a
amd-libflame: add dummy blas64 input for compatibility with wrapper
Right now only blas64 == false is supported.
2022-02-11 17:51:39 +01:00
Markus Kowalewski
f176a5b3ac
lapack-reference: allow building with ILP64 interface 2022-02-11 17:51:39 +01:00
Markus Kowalewski
c87e86dfeb
scalapack: allow to build with ILP64 interface 2022-02-06 18:58:29 +01:00
Markus Kowalewski
52899ec696
scalapack: 2.1.0 -> 2.2.0 2022-02-03 21:57:05 +01:00
R. Ryantm
a529f0c125 indilib: 1.9.3 -> 1.9.4 2022-01-31 10:27:04 -08:00
7c6f434c
9b76122d71
Merge pull request #140889 from collares/sage-9.5
sage: 9.4 -> 9.5
2022-01-31 13:24:26 +00:00
github-actions[bot]
bbbd0a92af
Merge master into staging-next 2022-01-25 00:02:13 +00:00
Mauricio Collares
1117dbbcf9 primecount: build library 2022-01-24 20:54:52 -03:00
Mauricio Collares
56b3968bec lcalc: 1.23 -> 2.0.5 2022-01-24 20:54:51 -03:00
Guillaume Girol
1b1fe46bb1
Merge pull request #156314 from B4dM4n/nixos-tests-missing
nixos/tests: add missing tests
2022-01-24 19:32:15 +00:00
github-actions[bot]
a45818989a
Merge master into staging-next 2022-01-24 18:01:03 +00:00
R. RyanTM
93a5b04b9a
scs: 3.0.0 -> 3.1.0
(#155857)
2022-01-24 18:26:40 +01:00
Patrick Hilhorst
4ed7bed68d
Merge branch 'master' into nixos-tests-missing 2022-01-24 12:05:30 +01:00
github-actions[bot]
11cced7438
Merge master into staging-next 2022-01-24 00:01:45 +00:00
Fabian Möller
4329d79dba
nixos/tests: link tests to their packages 2022-01-23 21:08:10 +01:00
Robert Scott
02ffdfc685 stellarsolver: enable on non-linux
builds happily on darwin for me
2022-01-23 19:52:17 +00:00
R. Ryantm
5404f23417 stellarsolver: 1.8 -> 1.9 2022-01-23 14:48:19 +00:00
github-actions[bot]
50e9a1df18
Merge master into staging-next 2022-01-18 12:01:20 +00:00
Dmitry Kalinkin
679fcbf366
itpp: mark as broken on darwin 2022-01-18 04:54:46 -05:00
github-actions[bot]
0173b359a6
Merge master into staging-next 2022-01-16 12:01:11 +00:00
Frederik Rietdijk
ae18d68b6b python2.pkgs: move expressions into python2-modules/ folder
Another step in further separating python2 from python3.
2022-01-16 10:00:16 +01:00
Jan Tojnar
f7aa55946b Merge branch 'staging-next' into staging
; Conflicts:
;	nixos/doc/manual/from_md/release-notes/rl-2205.section.xml
;	nixos/doc/manual/release-notes/rl-2205.section.md
;	pkgs/build-support/libredirect/default.nix
2022-01-10 01:26:05 +01:00
github-actions[bot]
3ce63131a1
Merge master into staging-next 2022-01-09 00:01:57 +00:00
Justin Bedo
982010d219
htslib: 1.13 -> 1.14 2022-01-06 13:22:49 +11:00
github-actions[bot]
25662d01ae
Merge staging-next into staging 2022-01-04 00:02:40 +00:00
Martin Weinelt
11a0b61783 Merge remote-tracking branch 'origin/master' into staging-next 2022-01-03 23:21:08 +01:00
Renaud
944a2dc835
Treewide: fix some permanent redirects on homepages
(#153213)
Issue #60004
2022-01-03 16:53:12 +01:00
markuskowa
a97320ef8b
Merge pull request #153174 from r-ryantm/auto-update/openblas
openblas: 0.3.18 -> 0.3.19
2022-01-03 11:40:19 +01:00
R. Ryantm
fba0c3293b openblas: 0.3.18 -> 0.3.19 2022-01-02 07:46:14 +00:00
github-actions[bot]
77da198145
Merge master into staging-next 2021-12-31 12:01:24 +00:00
R. Ryantm
1eca804d28 petsc: 3.16.1 -> 3.16.2 2021-12-30 22:27:19 -08:00
Robert Scott
1030e3e048
lapack: add patch for CVE-2021-4048 (#150788) 2021-12-25 16:56:35 -05:00
Dennis Gosnell
68a4f9da63 openblas: create symlinks for blas lapack static archives 2021-12-23 14:15:58 +01:00
github-actions[bot]
dfda17d6ba
Merge master into staging-next 2021-12-14 18:01:09 +00:00
Mauricio Collares
2ace52c087 primecount: init at 7.2 2021-12-14 14:03:46 -03:00
Alyssa Ross
c9a581b05f
Merge remote-tracking branch 'nixpkgs/master' into staging-next
CONFLICT (rename/add): Rename pkgs/development/python-modules/jsonwatch/default.nix->pkgs/tools/misc/jsonwatch/default.nix in nixpkgs/master.  Added pkgs/tools/misc/jsonwatch/default.nix in HEAD
2021-12-09 01:43:58 +00:00
Jörg Thalheim
b4bc71e87f
Merge pull request #149515 from r-ryantm/auto-update/primesieve
primesieve: 7.6 -> 7.7
2021-12-08 15:39:27 +00:00
R. Ryantm
f6e3fb9e9d petsc: 3.14.3 -> 3.16.1 2021-12-08 07:54:17 +00:00
R. Ryantm
7aa3afede9 primesieve: 7.6 -> 7.7 2021-12-08 04:37:35 +00:00
Alyssa Ross
f404068903
Merge remote-tracking branch 'nixpkgs/staging-next' into staging
Conflicts:
	pkgs/servers/search/groonga/default.nix
2021-12-02 14:52:44 +00:00
Hunter Jones
b952a9b16e adopt multiple packages 2021-12-01 22:04:14 -06:00
Alyssa Ross
01bce76b11
Merge remote-tracking branch 'nixpkgs/staging-next' into staging
Conflicts:
	pkgs/applications/virtualization/qemu/default.nix
2021-11-30 18:54:47 +00:00
Sandro
f8010e86f0
Merge pull request #146922 from hjones2199/indi193 2021-11-30 18:24:23 +01:00
Robert Scott
7cbda5539d cppe: fix build with clang 2021-11-29 18:57:33 +00:00
Jonathan Ringer
3bbe9a9459
Merge remote-tracking branch 'origin/staging-next' into staging
Conflicts:
	pkgs/top-level/all-packages.nix
2021-11-29 10:15:20 -08:00
markuskowa
07d64b4184
Merge pull request #144501 from r-ryantm/auto-update/openblas
openblas: 0.3.17 -> 0.3.18
2021-11-28 19:22:51 +01:00
markuskowa
c0d9398b7f
Merge pull request #144253 from sheepforce/pyscf
pyscf: 1.7.6.post1 -> 2.0.1
2021-11-28 18:31:02 +01:00
Phillip Seeber
938a9e00c5 cppe: init at 0.3.1
cppe: move pytestCheckHook to checkInputs


cppe: hash


cppe: license and hash


cppe: formatting


python3.pkgs.cppe: more tests


cppe: formatting


cppe: formatting


cppe: platforms


cppe: platforms
2021-11-22 12:28:47 +01:00
Phillip Seeber
2a9baed906 libxc: force 3rd and 4th derivatives compilation
libxc: formatting


libxc: platforms
2021-11-22 12:28:47 +01:00
flurie
b91f4d0097
bicgl: fix build for x86_64-darwin 2021-11-21 23:30:54 -05:00
Hunter Jones
2470459e2e indilib: 1.9.2 -> 1.9.3 2021-11-21 14:14:54 -06:00
Drew Risinger
6c6080dd3b scs: 2.1.1 -> 3.0.0 2021-11-17 14:16:08 -05:00
Sandro
7ba1fac583
Merge pull request #143525 from junjihashimoto/bump-pytorch 2021-11-16 10:38:14 +01:00
Sandro
770da1783a
Merge pull request #144128 from Stunkymonkey/development-github-5 2021-11-13 23:28:53 +01:00
Carsten Burstedde
4f5137569b
petsc, p4est: strict dependencies (#130156) 2021-11-12 17:29:12 +01:00
Felix Buehler
e4d3fd0531 openlibm: switch to fetchFromGitHub 2021-11-12 00:12:24 +01:00
Felix Buehler
e4d876957f primesieve: switch to fetchFromGitHub 2021-11-12 00:12:24 +01:00
xaverdh
03a257e5a3
treewide: quote urls according to rfc 0045 (#145260)
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
2021-11-10 11:37:56 +01:00
Junji Hashimoto
14c30c8521 libtorch-bin: 1.9.0 -> 1.10.0 2021-11-10 00:24:51 +00:00
Ryan Burns
5d043aa517
Merge pull request #137553 from dguibert/dg/cudatoolkit
update cudatoolkit (11.3/11.4), cuddn and cutensor
2021-11-06 17:17:12 -07:00
Bobby Rong
1b2c29472d
Merge pull request #144514 from r-ryantm/auto-update/or-tools
or-tools: 9.0 -> 9.1
2021-11-04 16:04:18 +08:00
R. Ryantm
b51891bd55 osqp: 0.6.0 -> 0.6.2 2021-11-03 18:59:30 +00:00
R. Ryantm
5ba98dc97c or-tools: 9.0 -> 9.1 2021-11-03 18:34:19 +00:00
R. Ryantm
39f9fd70e4 openblas: 0.3.17 -> 0.3.18 2021-11-03 17:56:25 +00:00
github-actions[bot]
2b9973012c
Merge master into staging-next 2021-11-01 06:01:15 +00:00
Rémy Grünblatt
c0b0059e8a ns-3: 3.34 -> 3.35 2021-11-01 01:26:58 +01:00
github-actions[bot]
6317a19147
Merge master into staging-next 2021-10-29 18:01:00 +00:00
Hunter Jones
4a6ab3798d cfitsio: 3.49 -> 4.0.0 2021-10-28 21:00:58 -05:00
Sandro
12dd909012
Merge pull request #134596 from r-ryantm/auto-update/suitesparse 2021-10-12 23:52:59 +02:00
Justin Bedo
292a1d6310
htslib: 1.11 -> 1.13 2021-10-12 10:17:32 +11:00
markuskowa
14ab975a71
Merge pull request #140975 from sheepforce/avogadro2-updates
avogadro2: 1.94.0 -> 1.95.1
2021-10-08 22:02:11 +02:00
Phillip Seeber
1ce8603471 libmsym: fixing homepage 2021-10-08 14:26:42 +02:00
Phillip Seeber
510ed22d74 avogadrolibs: 1.94.0 -> 1.95.1 2021-10-08 14:25:52 +02:00
Sandro
638e3dae94
Merge pull request #140681 from bcdarwin/update-elastix-homepage 2021-10-05 23:36:25 +02:00
Ben Darwin
0d7ed306f1 elastix: update homepage 2021-10-05 17:01:42 -04:00
Shamrock Lee
fecc5d7bff treewide: pkgs/**.nix: remove trailing whitespaces
Manually remove trailing white spaces
in `pkgs/**.nix` with the help of an editor

Auto-generated nix expressions containing trailing whitespaces:

*   pkgs/development/haskell-modules/hackage-packages.nix
    *   See issue https://github.com/NixOS/cabal2nix/issues/208
*   pkgs/**/eggs.nix
    *   I don't know how they are generated,
        but they seems to be Python-related.
2021-10-04 02:13:08 +08:00
David Guibert
a6448ad36e cutensor: make 11_4 as default 11 2021-09-28 13:48:47 +02:00
David Guibert
20d65c5838 cudnn: make 11_4 as default 11 2021-09-28 13:48:47 +02:00
David Guibert
9650d42a4c cutensor: 1.2.2.5 -> 1.3.1.3 2021-09-28 13:48:47 +02:00
Ryan Burns
7ba89a2e22 python3Packages.tensorflow-bin: remove nvidia_x11 reference
the nvidia driver should be picked up from /run/opengl-driver/lib
(and is, since we're already using addOpenGLRunpath)
2021-09-25 20:17:45 -07:00
David Guibert
659354f0b7 cudnn_cudatoolkit: init 11_3 and 11_4 2021-09-25 14:51:43 +02:00
Ryan Burns
156414ecbf
Merge pull request #136655 from samuela/samuela/cudatoolkit
cudatoolkit_11_{3,4}: init at 11.{3,4}.1
2021-09-24 12:20:40 -07:00
Samuel Ainsworth
512b0ffc64
cutensor_cudatoolkit_11: maintain same version as cudatoolkit_11
Co-authored-by: r-burns <52847440+r-burns@users.noreply.github.com>
2021-09-21 17:53:44 -07:00
Samuel Ainsworth
0981d9473f cudatoolkit_11_{3,4}: init at 11.{3,4}.1 2021-09-21 07:03:01 +00:00
github-actions[bot]
263bdbdad4
Merge master into staging-next 2021-09-18 06:01:19 +00:00
figsoda
98c8f701ea
Merge pull request #138043 from r-ryantm/auto-update/openlibm
openlibm: 0.7.5 -> 0.8.0
2021-09-17 21:00:59 -04:00
github-actions[bot]
00e2bbfcff
Merge staging-next into staging 2021-09-17 06:02:03 +00:00
Hunter Jones
86f62ec915 indilib: 1.9.1 -> 1.9.2 2021-09-15 14:08:57 -05:00
R. RyanTM
f76566c437 openlibm: 0.7.5 -> 0.8.0 2021-09-15 19:04:18 +00:00
github-actions[bot]
fef6f602e6
Merge staging-next into staging 2021-09-12 18:01:50 +00:00
github-actions[bot]
a13bf1828b
Merge master into staging-next 2021-09-12 18:01:21 +00:00
Daniël de Kok
6f2ce2a65e treewide: remove danieldk as maintainer from a set of packages
I currently do not have much time to work on nixpkgs. Remove
myself as a maintainer from a bunch of packages to avoid that
people are waiting on me for a review.
2021-09-12 14:42:12 +00:00
github-actions[bot]
6188f2aeeb
Merge staging-next into staging 2021-09-11 06:01:28 +00:00
Martin Weinelt
bae10ead99 Merge remote-tracking branch 'origin/master' into staging-next 2021-09-11 02:29:58 +02:00
Hunter Jones
3678b3d2c7 stellarsolver: 1.5 -> 1.8 2021-09-07 12:22:21 -05:00
Sandro Jäckel
37d31ecb87 caffe2: mark broken 2021-09-05 15:01:20 +02:00
Markus Kowalewski
2589c35d85
spooles: move gfortran to nativeBuildInputs 2021-09-03 13:33:34 +02:00
Markus Kowalewski
80300f2bfb
scalapack: move gfortran to nativeBuildInputs 2021-09-03 13:33:34 +02:00
Markus Kowalewski
62ada7c8ed
ipopt: move gfortran to nativeBuildInputs 2021-09-03 13:33:34 +02:00
Markus Kowalewski
4c8194527f
clblas: move gfortran to nativeBuildInputs 2021-09-03 13:33:34 +02:00
Markus Kowalewski
ece4c5fc29
cholmod-extra: move gfortran to nativeBuildInputs 2021-09-03 13:33:33 +02:00
Markus Kowalewski
5ed6afda44
blas: move gfortran to nativeBuildInputs 2021-09-03 13:33:33 +02:00
Markus Kowalewski
f61aa16302
arpack: move gfortran to nativeBuildInputs 2021-09-03 13:33:33 +02:00
Sandro Jäckel
0c68cfdec8 caffe2: mark broken 2021-09-01 21:23:27 +02:00
Jan Tojnar
7a04c2ad68 Merge branch 'staging-next' into staging
- boost 171 removed on staging-next
- re-generated node-packages.nix

; Conflicts:
;	pkgs/development/java-modules/m2install.nix
;	pkgs/development/node-packages/node-packages.nix
;	pkgs/top-level/all-packages.nix
2021-08-22 01:13:41 +02:00
Rémy Grünblatt
db079ab798 ns-3: 3.33 -> 3.34 2021-08-20 14:17:10 +02:00
R. RyanTM
2be4d0c9f1 suitesparse: 5.9.0 -> 5.10.1 2021-08-18 02:06:22 +00:00
R. RyanTM
3c3d2edc09 openspecfun: 0.5.3 -> 0.5.5 2021-08-15 16:36:56 +00:00
Ryan Burns
6bc10e34bd openblas: 0.3.15 -> 0.3.17 2021-08-13 13:01:22 -07:00
Sandro
93ead26f57
Merge pull request #130359 from sheepforce/avogadro2 2021-08-08 13:07:33 +02:00
Ben Siraphob
54bc3fd519
Merge pull request #110249 from r-ryantm/auto-update/petsc
petsc: 3.14.2 -> 3.14.3
2021-07-31 19:06:35 +07:00
Frederik Rietdijk
8dcfe523f7
Merge pull request #131719 from FRidh/python2-to-3
Python: further migrate packages from 2 to 3
2021-07-29 10:49:00 +02:00
Frederik Rietdijk
dc04d776a3 mirtk: use python3 2021-07-27 20:42:00 +02:00
Phillip Seeber
43e749aa76 avogadrolibs: init at 1.94.0
avogadrolibs: review comments
2021-07-27 18:43:15 +02:00
Phillip Seeber
b5bf1346c0 molequeue: init at 0.9.0
molequeue: review comments
2021-07-27 18:43:15 +02:00
Phillip Seeber
3ea182f321 mmtf-cpp: init at 1.0.0 2021-07-27 18:43:15 +02:00
Phillip Seeber
a54c0b9503 libmsym: init at 0.2.3
libmsym: code-review stuff
2021-07-27 18:43:15 +02:00
Sandro Jäckel
57c3d06e2c liblapack: 3.9.1 -> 3.10.0 2021-07-22 14:03:57 -07:00
github-actions[bot]
382fdc7ad3
Merge master into staging-next 2021-07-18 00:01:24 +00:00
Sandro
b4176ae90a
Merge pull request #130472 from Stunkymonkey/inherit-version3
various: cleanup of "inherit version;"
2021-07-18 00:38:39 +02:00
Felix Buehler
e023025ee0 various: cleanup of "inherit version;" 2021-07-17 22:39:35 +02:00
Ben Siraphob
8ff57341d1
Merge pull request #130459 from hjones2199/wcs77
wcslib: 7.6 -> 7.7
2021-07-18 02:12:20 +07:00
Hunter Jones
c6bd32b06a wcslib: 7.6 -> 7.7 2021-07-17 09:53:34 -05:00
Jörg Thalheim
7afa51c2bd Merge remote-tracking branch 'upstream/master' into HEAD 2021-07-14 15:45:51 +02:00
Sandro Jäckel
388a4ef423
treewide: convert all links git.archlinux.org to github.com/archlinux/svntogit-* 2021-07-14 03:35:21 +02:00
github-actions[bot]
56d22e36bd
Merge master into staging-next 2021-07-12 12:01:28 +00:00
Carsten Burstedde
cf4b4bdbea
petsc: specify python3 and remove unneeded patch 2021-07-06 23:10:19 +02:00
Carsten Burstedde
80697bfb8e
petsc: build with p4est for all platforms
Recent master updates make p4est build on aarch64 and darwin.
Undo their deactivation in the petsc build.
2021-07-06 07:20:21 +02:00
Carsten Burstedde
25456656ef
Merge branch 'master' into package-petsc-p4est 2021-07-06 07:19:35 +02:00
Carsten Burstedde
27b512299f
petsc: restrict patchSheBang; use configureScript
The configure script can be called with python via configureScript.
This leaves only ./lib/petsc/bin to be patched.
2021-07-06 07:13:59 +02:00
github-actions[bot]
3ddb8d5a79
Merge staging-next into staging 2021-07-06 00:02:03 +00:00
Sandro
da0ccc6f62
Merge pull request #129350 from cburstedde/package-p4est-sc 2021-07-05 23:44:58 +02:00
github-actions[bot]
a28ba52cac
Merge staging-next into staging 2021-07-05 18:01:46 +00:00
github-actions[bot]
e16d818a0b
Merge master into staging-next 2021-07-05 18:01:11 +00:00
Carsten Burstedde
65e659f0f4
p4est, p4est-sc: fix checks with OpenMPI
Setting environment variables in preCheck to make MPI tests run.
This is one commit for two packages in order not to break the dependency.
2021-07-05 19:59:57 +02:00
Carsten Burstedde
705afbd338
Merge branch 'master' into package-petsc-p4est 2021-07-05 19:30:59 +02:00
Carsten Burstedde
c99a5b9a60
petsc: do not build with p4est on darwin 2021-07-05 16:58:59 +02:00
Carsten Burstedde
87da2a0414
petsc: do not build with p4est on aarch64 2021-07-05 15:39:02 +02:00
Carsten Burstedde
56a6d5245d
p4est: refactor using p4est-sc.configureFlags
Switch to using p4est-sc.configureFlags as starting point.
This removes some redundancy between both packages.
2021-07-05 12:00:02 +02:00
Carsten Burstedde
6c00893063
p4est-sc: refactor mpi and pthread support
On aarch64, the tests won't run with MPI, hence disabling MPI there.
Add -pthread to CFLAGS unconditionally via --enable-pthread.
Check for "openmpi" pname and not package equality with mpi.
2021-07-05 11:59:50 +02:00
github-actions[bot]
c852543c1f
Merge staging-next into staging 2021-07-04 06:01:43 +00:00
github-actions[bot]
89ee82a6e9
Merge master into staging-next 2021-07-04 06:01:11 +00:00
R. RyanTM
b84b5172a9 blas-reference: 3.8.0 -> 3.10.0
fixup references to ARCH and ARCHFLAGS which have been renamed AR
and ARFLAGS respectively
2021-07-03 20:09:42 +01:00
Ben Siraphob
5977d7f5c4
Merge pull request #127003 from Stunkymonkey/3pname&name 2021-07-02 08:29:36 +07:00
Felix Buehler
58a2d4b666 development: /s/name/pname&version/ 2021-07-02 00:03:10 +02:00
Carsten Burstedde
bcf9629def
petsc: remove unnecessary configure options 2021-07-01 22:57:25 +02:00
Carsten Burstedde
ce30d367c1
petsc: assert requirement for p4est.mpiSupport 2021-07-01 22:57:25 +02:00
Carsten Burstedde
dbf5898462
petsc: simplify blas, lapack dependencies 2021-07-01 22:27:03 +02:00
Carsten Burstedde
8834c5399c
petsc: address couple suggestions 2021-07-01 22:16:56 +02:00
Carsten Burstedde
72c23a3469
petsc: refactor using mpi and p4est 2021-07-01 10:07:12 +02:00
github-actions[bot]
7f05df0a91
Merge master into staging-next 2021-06-30 06:04:18 +00:00
Sandro
4b3cb7c6ee
Apply suggestions from code review 2021-06-30 02:23:34 +02:00
Felix Buehler
bf884a789e openspecfun: use fetchFromGitHub and pname&version 2021-06-29 23:22:56 +02:00
Carsten Burstedde
2bd08c849a
p4est: init at unstable-2021-06-22 2021-06-28 09:41:14 +02:00
Carsten Burstedde
eb396b1587
p4est-sc: init at unstable-2021-06-14 2021-06-27 19:50:53 +02:00
github-actions[bot]
1016b5a6ba
Merge staging-next into staging 2021-06-27 00:10:43 +00:00
Sandro
c890f178ac
Merge pull request #128240 from hjones2199/indi191
indilib: 1.9.0 -> 1.9.1
2021-06-26 21:58:22 +02:00
Hunter Jones
15270b5c83 indilib: 1.9.0 -> 1.9.1 2021-06-26 13:13:45 -05:00
github-actions[bot]
be086cc67b
Merge staging-next into staging 2021-06-25 12:06:08 +00:00
markuskowa
50a59c78ec
Merge pull request #118509 from r-ryantm/auto-update/liblapack
lapack-reference: 3.9.0 -> 3.9.1
2021-06-25 13:42:06 +02:00
Robert Schütz
c1dca92daf Merge branch 'master' into staging-next 2021-06-25 10:02:10 +02:00
Phillip Cloud
c98d1b514e edgetpu-compiler: init at 15.0 2021-06-24 11:45:47 -04:00
Martin Weinelt
eef9694ebc
Merge branch 'master' into staging-next 2021-06-22 00:58:31 +02:00
Phillip
ec92453a34 xcfun: init at 2.1.1
Update pkgs/development/libraries/science/chemistry/xcfun/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
Update pkgs/development/libraries/science/chemistry/xcfun/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
Update pkgs/development/libraries/science/chemistry/xcfun/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
Update pkgs/development/libraries/science/chemistry/xcfun/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
Update pkgs/development/libraries/science/chemistry/xcfun/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
2021-06-21 10:24:23 +02:00
github-actions[bot]
dd892e7e2f
Merge master into staging-next 2021-06-18 12:04:55 +00:00
Sandro
3cb2dc3000
Merge pull request #127296 from danieldk/libtorch-bin-1.9.0
libtorch-bin: 1.8.1 -> 1.9.0
2021-06-18 12:06:58 +02:00
Phillip Cloud
5c533a0232
tensorflow-lite: set CXXSTANDARD to c++17 (#127209) 2021-06-18 11:46:37 +02:00
Daniël de Kok
085055fc2b libtorch-bin: 1.8.1 -> 1.9.0
Changelog:

https://github.com/pytorch/pytorch/releases/tag/v1.9.0
2021-06-18 06:58:48 +02:00
Martin Weinelt
80b5db5713
Merge pull request #126393 from zhaofengli/openblas-riscv
openblas: Enable riscv64-linux
2021-06-17 00:29:41 +02:00
Zhaofeng Li
dd39a58f90 openblas: Enable riscv64-linux 2021-06-16 13:47:42 -07:00
github-actions[bot]
8b9fa8d446
Merge staging-next into staging 2021-06-16 18:04:48 +00:00
github-actions[bot]
2d104c99a7
Merge master into staging-next 2021-06-16 18:04:45 +00:00
Phillip Cloud
294610cc7f
tensorflow-lite: add missing source file (#126609) 2021-06-16 17:52:05 +02:00
Alyssa Ross
926765c5e3
Merge remote-tracking branch 'nixpkgs/staging-next' into staging
Conflicts:
	pkgs/servers/http/apache-httpd/2.4.nix
2021-06-11 02:05:00 +00:00
github-actions[bot]
dcfc502458
Merge master into staging-next 2021-06-11 00:09:47 +00:00
Phillip Cloud
de470025e5 tensorflow-lite: init at v2.5.0 2021-06-10 08:20:51 -04:00
github-actions[bot]
b511c637c8
Merge staging-next into staging 2021-06-03 19:52:05 +00:00
github-actions[bot]
a9f286f5cf
Merge master into staging-next 2021-06-03 19:52:02 +00:00
Zhaofeng Li
1421309df4 papi: 5.6.0 -> 6.0.0.1 2021-05-28 18:38:34 -07:00
Markus Kowalewski
5946bc724f
openblas: disable AVX512, make optional
This effectly reverts 383075f38b.

Some AVX512 optimized kernels seem to be broken in openblas.
See https://github.com/NixOS/nixpkgs/issues/124250.
2021-05-25 10:59:42 +02:00
github-actions[bot]
e9fa1eeaf7
Merge master into staging-next 2021-05-23 12:26:48 +00:00
Robert Schütz
dfc658fd2e
Merge pull request #124068 from risicle/ris-igraph-arpack-darwin-blas-paths
igraph,arpack: correct libblas.dylib's path on darwin, fixing python3Packages.python-igraph
2021-05-23 13:12:11 +02:00
Jonathan Ringer
b9b9cdb87c
Merge remote-tracking branch 'origin/staging' into staging-next 2021-05-22 19:23:14 -07:00
Robert Scott
1241d9fae3 arpack: fix libblas.dylib's path on darwin 2021-05-22 19:03:56 +01:00
Gabriel Ebner
a6d48f9c2a or-tools: 8.1 -> 9.0 2021-05-22 16:57:32 +02:00
Thomas Tuegel
6543c0558b
Merge pull request #122035 from markuskowa/upd-openblas
openblas: 0.3.13 -> 0.3.15
2021-05-18 10:25:50 -05:00
Hunter Jones
ce5c22b83d stellarsolver: set platform to linux 2021-05-10 16:12:58 -05:00
Markus Kowalewski
1c26edbf8d
openblas: 0.3.13 -> 0.3.15 2021-05-07 17:39:12 +02:00
Daniël de Kok
303977634c libtorch-bin: fix false CUDA dependency in passthru test
The passthru test used the CUDA toolkit for the CUDA stub
unconditionally, also requiring the cudatoolkit derivation when
cudaSupport = false.
2021-05-01 11:43:52 -07:00
Daniël de Kok
039101ad94 libtorch-bin: 1.8.0 -> 1.8.1
Changelog:

https://github.com/pytorch/pytorch/releases/tag/v1.8.1
2021-05-01 11:43:52 -07:00
Daniël de Kok
9faac78ede
Merge pull request #119778 from danieldk/cudnn-8.1.1
cudnn_cudatoolkit_11_0: 8.1.0 -> 8.1.1
2021-05-01 11:52:37 +02:00
Sandro
201fcfc556
Merge pull request #120459 from hjones2199/indi19
indlib: 1.8.9 -> 1.9.0
2021-04-30 03:24:55 +02:00
Hunter Jones
14db724f1f indlib: 1.8.9 -> 1.9.0 2021-04-29 12:57:58 -05:00
Mateusz Kowalczyk
60ed2deee5 openblas: Allow setting DYNAMIC_ARCH 2021-04-28 14:40:23 +09:00
Daniël de Kok
f75286e063 cudatoolkit-{9,9_0,9_1,9_2}: remove
Remove old CUDA toolkits (and corresponding CuDNN versions).

- Not supported by upstream anymore.
- We do not use them in nixpkgs.
- We do not test or actively maintain them.
- Anything but ancient GPUs is supported by newer toolkits.

Fixes #107131.
2021-04-18 11:55:10 +02:00
Daniël de Kok
7475b12169 cudnn_cudatoolkit: accept hash attribute for SRI hashes 2021-04-18 10:53:22 +02:00
Daniël de Kok
8bd4d8ee66 cudnn_cudatoolkit_11_0: 8.1.0 -> 8.1.1
Changelog:

https://docs.nvidia.com/deeplearning/cudnn/release-notes/rel_8.html#rel-811
2021-04-18 10:44:09 +02:00
Pavol Rusnak
03518371af
oobicpl: unstable-2016-03-02 -> unstable-2020-08-12 2021-04-17 18:45:19 +02:00
Pavol Rusnak
bc7f4759ec
bicpl: unstable-2017-09-10 -> unstable-2020-10-15 2021-04-17 18:44:13 +02:00
hjones2199
35c8995dab
wcslib: 7.5 -> 7.6 (#119504)
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
2021-04-16 00:02:55 +02:00
github-actions[bot]
0ba1008684
Merge master into staging-next 2021-04-08 06:05:39 +00:00
Benjamin Hipple
a634ea874a
Merge pull request #117354 from danieldk/onemkl
mkl: 2020.3.304 -> 2021.1.1.52
2021-04-07 23:47:55 -04:00
Jan Tojnar
714ef27ffe Merge branch 'master' into staging-next 2021-04-07 05:32:57 +02:00
hjones2199
4cb48cc256
indilib: set platform to linux (#118696)
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
2021-04-07 02:39:37 +02:00
Jan Tojnar
c04a14edd6 Merge branch 'master' into staging-next 2021-04-06 16:01:14 +02:00
R. RyanTM
9655bb9a69 lapack-reference: 3.9.0 -> 3.9.1 2021-04-04 21:43:42 +00:00
Sandro Jäckel
3453b89f4b
lzma: deprecate alias 2021-04-04 19:49:52 +02:00
github-actions[bot]
b152812791
Merge staging-next into staging 2021-04-01 00:15:44 +00:00
Sandro
dde6522c5b
Merge pull request #118111 from hjones2199/astrolibs-consolidation 2021-03-31 21:25:45 +02:00
Hunter Jones
e22c73504e indilib: inherit meta information from base library in symlink env 2021-03-31 00:21:11 -05:00
Hunter Jones
41785b591c wcslib: 7.3.1 -> 7.5 2021-03-31 00:21:11 -05:00
Hunter Jones
ac3de55e62 wcslib: adopt package 2021-03-30 23:27:59 -05:00
Hunter Jones
0eb5186106 treewide: move astro libraries into pkgs/development/libraries/science/astronomy 2021-03-30 23:11:55 -05:00
github-actions[bot]
15f796ceaf
Merge staging-next into staging 2021-03-27 12:06:16 +00:00
github-actions[bot]
5021a8bc13
Merge master into staging-next 2021-03-27 12:06:13 +00:00
Doron Behar
20826f0710
Merge pull request #117685 from dotlambda/arpack-3.8.0
arpack: 3.7.0 -> 3.8.0
2021-03-27 11:09:44 +00:00
Robert Schütz
9e4b635dee arpack: 3.7.0 -> 3.8.0 2021-03-27 10:54:26 +01:00
Jan Tojnar
b3c854b60b
Merge branch 'staging-next' into staging 2021-03-26 07:53:44 +01:00
github-actions[bot]
7c9222212f
Merge master into staging-next 2021-03-25 18:14:01 +00:00
Frederik Rietdijk
350f9bd822
Merge pull request #117570 from FRidh/python2alias
Python: be explicit on whether it is python2 or python3 that is used
2021-03-25 13:26:35 +01:00
github-actions[bot]
4dc869e403
Merge master into staging-next 2021-03-25 12:06:22 +00:00
Sandro
499600b06d
Merge pull request #116499 from danieldk/amd-blis-3.0
amd-blis: 2.2 -> 3.0
2021-03-25 11:18:54 +01:00
Frederik Rietdijk
c71c5a3cb0 clblas: use python3 2021-03-25 10:27:04 +01:00
Daniël de Kok
651bf7fd08 amd-blis: 2.2 -> 3.0
Changelog:

https://github.com/amd/blis/releases/tag/3.0
2021-03-25 08:56:12 +01:00
Daniël de Kok
9b11429890
Merge pull request #117553 from r-ryantm/auto-update/blis
blis: 0.8.0 -> 0.8.1
2021-03-25 08:00:28 +01:00
R. RyanTM
d4f001a267 blis: 0.8.0 -> 0.8.1 2021-03-25 02:54:40 +00:00
Daniël de Kok
6556beb779 mkl: 2020.3.304 -> 2021.1.1.52
Intel MKL is succeeded by Intel oneMKL. This also results in several
changes:

- The versioning scheme has been changed, it now consists of a version
  such as "2021.1.1" and a build such as "52".
- The tarball of RPMs has been replaced by a relatively complex
  installer, so instead we use the RPMs provided by the upstream
  Yum repository.

To better detect breakage, the passthru tests also check static builds
and with parallel (iomp) execution.
2021-03-23 14:55:06 +01:00
mschwaig
de2c3e08c0
openblas: apply patch to prevent SIGILL on aarch64 (#117004)
The applied patch contains the changes from this PR:
https://github.com/xianyi/OpenBLAS/pull/3060

This patch prevents gcc from reordering instructions in a way
that can cause crashes with SIGILL on aarch64.

This issue crashes python when importing numpy on aarch64:
https://github.com/numpy/numpy/issues/18131
2021-03-21 16:12:12 -04:00
github-actions[bot]
8c03075f07
Merge staging-next into staging 2021-03-19 00:41:08 +00:00
github-actions[bot]
d73a492e83
Merge master into staging-next 2021-03-19 00:41:01 +00:00
Fabian Affolter
2a32b0d28b
Merge pull request #110262 from r-ryantm/auto-update/primesieve
primesieve: 7.5 -> 7.6
2021-03-18 22:59:50 +01:00
Ivan Babrou
d4d14bd4b6
liblapack: disable select tests on all darwin platforms (#116779) 2021-03-18 16:34:50 -04:00