Alexis Praga
cc4bd30387
perlPackages.BioBigfile: init at 1.07
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Perl interface to manipulate BigWig and BigBeg files (for genomics)
This will be used to package VEP : uttps://www.ensembl.org/info/docs/tools/vep/script/vep_download.html
For that, only kent version 335 works at the moment.
For this commit, 2 commits for kent are needed
- e027a5d8362b2c6f4c28
2023-11-21 23:16:12 +01:00
Alexis Praga
2b2c6f4c28
kent: enable patches if needed.
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This is required by BioBigFile, which needs an older Kent version.
2023-11-12 21:46:39 +01:00
7c6f434c
5c93b37109
Merge pull request #264760 from r-ryantm/auto-update/R
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R: 4.3.1 -> 4.3.2
2023-11-10 15:12:42 +00:00
Renato Garcia
3c87cb32f0
snakemake: 7.29.0 -> 7.32.4 ( #266543 )
2023-11-10 06:48:45 -05:00
Silvan Mosberger
fb2e311d1e
root5: Fix build with Python 3.11
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Was broken since the Python update from https://github.com/NixOS/nixpkgs/pull/251878
This should fix the apfelgrid and applgrid builds, not tested yet
2023-11-09 19:01:58 +01:00
R. Ryantm
70bc041b9c
bedtools: 2.31.0 -> 2.31.1
2023-11-09 06:18:08 +00:00
Weijia Wang
67fc292e5a
Merge pull request #266136 from wegank/stellarium-fix
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stellarium: fix version
2023-11-08 12:12:26 +01:00
Justin Bedő
5cd7971391
Merge pull request #264872 from r-ryantm/auto-update/last
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last: 1471 -> 1499
2023-11-08 09:21:48 +11:00
Artturi
d24da52844
Merge pull request #265764 from amjoseph-nixpkgs/pr/pythonForBuild
2023-11-08 00:13:25 +02:00
Weijia Wang
73698c7c06
stellarium: fix version
2023-11-07 21:23:26 +01:00
R. Ryantm
6ff2f664cd
polymake: 4.10 -> 4.11
2023-11-07 10:26:26 +00:00
Weijia Wang
c97fbef1f3
Merge pull request #265981 from wegank/root-patches-drop
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root: drop patches
2023-11-07 03:20:41 +01:00
Weijia Wang
5827957a06
root: drop patches
2023-11-07 02:42:16 +01:00
Dmitry Kalinkin
93b63a2cab
Merge pull request #265514 from xworld21/treewide-texlive-with-packages
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treewide: switch to texlive.withPackages
2023-11-06 16:47:04 -05:00
Adam Joseph
bc2d598878
treewide: change pythonForBuild to pythonOnBuildForHost
2023-11-05 17:42:12 -08:00
Vincenzo Mantova
69899e59a2
R: replace texlive.combine with texliveSmall.withPackages
2023-11-05 13:43:30 +00:00
Markus Kowalewski
3d4c831671
nwchem: 7.2.1 -> 7.2.2
2023-11-05 14:08:05 +01:00
Vincenzo Mantova
9b4d056ec5
xyce: replace texlive.combine with texliveMedium.withPackages
2023-11-05 11:56:05 +00:00
Vincenzo Mantova
eb6eef1073
singular: replace texlive.combined.scheme-small with texliveSmall
2023-11-05 11:56:04 +00:00
Vincenzo Mantova
37726ded83
giac: replace texlive.combined.scheme-small with texliveSmall
2023-11-05 11:56:03 +00:00
Vincenzo Mantova
d589dcc0e9
openmolcas: replace texlive.combined.scheme-minimal with texliveMinimal
2023-11-05 11:56:03 +00:00
Vincenzo Mantova
fb56552789
pari: replace texlive.combined.scheme-basic with texliveBasic
2023-11-05 11:54:55 +00:00
R. Ryantm
f0ae83ce52
gwyddion: 2.63 -> 2.64
2023-11-04 09:13:11 -07:00
R. Ryantm
c526304148
uhdm: 1.76 -> 1.77
2023-11-04 09:08:43 -07:00
Weijia Wang
91eee2a69e
Merge pull request #262844 from r-ryantm/auto-update/qgroundcontrol
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qgroundcontrol: 4.2.8 -> 4.2.9
2023-11-04 00:46:03 +01:00
OTABI Tomoya
9b586ea68f
Merge pull request #243431 from natsukium/kssd/update
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kssd: 1.1 -> 2.21; enable aarch64-linux support
2023-11-03 20:15:48 +09:00
natsukium
10c3a40621
kssd: enable aarch64-linux support & tests
2023-11-03 19:34:28 +09:00
natsukium
847c506eae
kssd: refactor
2023-11-03 19:34:28 +09:00
natsukium
fdc1ddd305
kssd: 1.1 -> 2.21
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Diff: https://github.com/yhg926/public_kssd/compare/v1.1...v2.21
2023-11-03 19:34:28 +09:00
Pablo Ovelleiro Corral
5c90581563
coq: fix hompage url
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Just a trivial nitpick
2023-11-02 15:26:30 +01:00
R. Ryantm
c783a977dc
last: 1471 -> 1499
2023-11-01 19:08:21 +00:00
R. Ryantm
454e029519
mmseqs2: 14-7e284 -> 15-6f452
2023-11-01 09:19:34 +00:00
R. Ryantm
3c7be35913
R: 4.3.1 -> 4.3.2
2023-11-01 07:19:05 +00:00
Mario Rodas
7d0a063a1a
Merge pull request #264551 from r-ryantm/auto-update/boinc
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boinc: 7.24.1 -> 7.24.2
2023-10-31 07:11:59 -05:00
R. Ryantm
9ca6747e6b
boinc: 7.24.1 -> 7.24.2
2023-10-31 08:44:00 +00:00
Mario Rodas
f811a92b7b
Merge pull request #256550 from bcdarwin/opencv-updates
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{caffe,mxnet,sdrangel,video2midi,waifu2x-converter-cpp}: opencv3 -> opencv4
2023-10-30 22:21:15 -05:00
Felix Bühler
83dbda68a8
Merge pull request #263781 from r-ryantm/auto-update/clp
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clp: 1.17.8 -> 1.17.9
2023-10-30 23:31:02 +01:00
Mario Rodas
39042adae3
lean4: 4.1.0 -> 4.2.0
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Diff: https://github.com/leanprover/lean4/compare/v4.1.0...v4.2.0
Changelog: https://github.com/leanprover/lean4/blob/v4.2.0/RELEASES.md
2023-10-30 04:20:00 +00:00
OTABI Tomoya
d9603c14be
Merge pull request #263887 from r-ryantm/auto-update/qucs-s
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qucs-s: 2.0.0 -> 2.1.0
2023-10-29 16:47:43 +09:00
Guillaume Girol
97da6c943d
Merge pull request #262311 from scalavision/update-deeptools
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deeptools: 3.5.1 -> 3.5.4
2023-10-28 16:51:14 +02:00
markuskowa
10a91eeeb1
Merge pull request #263844 from r-ryantm/auto-update/jmol
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jmol: 16.1.41 -> 16.1.43
2023-10-28 16:31:51 +02:00
OTABI Tomoya
ae84a36b66
Merge pull request #262697 from natsukium/dssp/update
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dssp: 4.4.3 -> 4.4.4.1; libcifpp: 5.2.1 -> 5.2.2
2023-10-28 12:20:29 +09:00
R. Ryantm
2189d5d178
qucs-s: 2.0.0 -> 2.1.0
2023-10-28 02:19:22 +00:00
Weijia Wang
90e0e54124
Merge pull request #261508 from r-ryantm/auto-update/raxml
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raxml: 8.2.12 -> 8.2.13
2023-10-28 03:30:42 +02:00
R. Ryantm
ddb42e2e09
jmol: 16.1.41 -> 16.1.43
2023-10-27 19:51:26 +00:00
Phillip Seeber
bde9b25ce2
cp2k: allow fortran argument mismatches
2023-10-27 17:25:24 +02:00
R. Ryantm
160cafb403
clp: 1.17.8 -> 1.17.9
2023-10-27 12:28:56 +00:00
R. Ryantm
ee3ee9adc4
eigenmath: unstable-2023-08-03 -> unstable-2023-10-26
2023-10-27 04:14:57 +00:00
Nick Cao
de2dcc2689
Merge pull request #263313 from r-ryantm/auto-update/delly
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delly: 1.1.7 -> 1.1.8
2023-10-25 09:22:20 -04:00
R. Ryantm
bda407e1c8
delly: 1.1.7 -> 1.1.8
2023-10-25 10:07:12 +00:00
