Alexis Praga
cc4bd30387
perlPackages.BioBigfile: init at 1.07
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Perl interface to manipulate BigWig and BigBeg files (for genomics)
This will be used to package VEP : uttps://www.ensembl.org/info/docs/tools/vep/script/vep_download.html
For that, only kent version 335 works at the moment.
For this commit, 2 commits for kent are needed
- e027a5d836
: packaging kent header
- 2b2c6f4c28
: enabling patches in kent
2023-11-21 23:16:12 +01:00
Alexis Praga
2b2c6f4c28
kent: enable patches if needed.
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This is required by BioBigFile, which needs an older Kent version.
2023-11-12 21:46:39 +01:00
Martin Weinelt
9c19bc1a55
Merge pull request #266730 from sikmir/python-telegram
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python3Packages.python-telegram: fix build
2023-11-10 22:49:49 +01:00
Nikolay Korotkiy
8e3beac69e
python3Packages.python-telegram: fix build
2023-11-11 01:48:44 +04:00
Nikolay Korotkiy
5baff4f4c4
python3Packages.telegram-text: init at 0.1.2
2023-11-11 01:48:44 +04:00
Peder Bergebakken Sundt
cbc984043d
Merge pull request #265264 from OPNA2608/update/palemoon-bin
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palemoon-bin: 32.4.1 -> 32.5.0
2023-11-10 23:34:55 +02:00
Kira Bruneau
0cc094c041
Merge pull request #265886 from kira-bruneau/at-spi2-core
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nixos/gnome/at-spi2-core: fix disabling a11y in all contexts
2023-11-10 16:31:53 -05:00
Niklas Hambüchen
dcceeb9868
manual: tests: Describe how to port-forward into test VMs
2023-11-10 22:29:12 +01:00
Niklas Hambüchen
5d73d954cd
manual: Don't suggest exposing VM port to local network.
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The setting
QEMU_NET_OPTS="hostfwd=tcp::2222-:22"
caused the VM's port 2222 to be advertised on the host as
`0.0.0.0:2222`, thus anybody in the local network of the host
could SSH into the VM.
Instead, port-forward to localhost only.
Use `127.0.0.1` also on the VM side, otherwise connections to
services that, in the VM, bind to `127.0.0.1` only
(doing the safe approach) do not work.
See e.g. https://github.com/NixOS/nixpkgs/issues/100192
for more info why localhost listening is the best default.
2023-11-10 22:29:12 +01:00
Peder Bergebakken Sundt
db9269399b
Merge pull request #264329 from SuperSamus/flycast-update
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flycast: 2.1 -> 2.2
2023-11-10 23:14:54 +02:00
Peder Bergebakken Sundt
32a49bf4b8
Merge pull request #266030 from nevivurn/feat/apt-cacher-ng-glibc
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apt-cacher-ng: fix build for glibc >= 2.38
2023-11-10 23:06:29 +02:00
Michele Guerini Rocco
eb62077e19
Merge pull request #266452 from r-ryantm/auto-update/pdns-recursor
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pdns-recursor: 4.9.1 -> 4.9.2
2023-11-10 22:04:53 +01:00
Peder Bergebakken Sundt
e5f2b7e703
Merge pull request #266451 from Emantor/fix/labgrid
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python3Packages.labgrid: fix the build
2023-11-10 22:31:53 +02:00
Peder Bergebakken Sundt
98bed4d0b5
Merge pull request #266389 from robert-manchester/scikit-rf-fix
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python311Packages.scikit-rf: 0.29.0 -> 0.29.1; fix build
2023-11-10 22:17:11 +02:00
Artturi
cc0b49cc27
Merge pull request #266253 from amjoseph-nixpkgs/pr/skalibs/fixcross
2023-11-10 21:57:44 +02:00
Robert Hensing
cfd83c931f
Merge pull request #261732 from tweag/fileset.fromSource
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`lib.fileset.fromSource`: init
2023-11-10 20:32:51 +01:00
Artturi
e7a5bb59fb
Merge pull request #230650 from e1mo/ejabberd-awk
2023-11-10 21:07:59 +02:00
Artturi
55f883b7c7
Merge pull request #265993 from natsukium/tabula-py/update
2023-11-10 21:04:12 +02:00
Lassulus
dee8714463
Merge pull request #265512 from zupo/master
2023-11-10 19:57:42 +01:00
Fabian Affolter
593c11ae9a
Merge pull request #266612 from r-ryantm/auto-update/python311Packages.maison
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python311Packages.maison: 1.4.0 -> 1.4.1
2023-11-10 19:52:08 +01:00
Fabian Affolter
3eb27aa4f1
Merge pull request #266614 from r-ryantm/auto-update/python311Packages.mechanize
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python311Packages.mechanize: 0.4.8 -> 0.4.9
2023-11-10 19:51:43 +01:00
Fabian Affolter
436e8dc7c7
Merge pull request #266615 from r-ryantm/auto-update/python311Packages.omemo-dr
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python311Packages.omemo-dr: 1.0.0 -> 1.0.1
2023-11-10 19:51:30 +01:00
Atemu
b53d47f5ef
Merge pull request #266660 from mahmoudk1000/master
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anki-bin: 23.10 -> 23.10.1
2023-11-10 19:37:19 +01:00
Artturi
6f726bd5aa
Merge pull request #256816 from Artturin/pythondocpython3packages
2023-11-10 20:25:00 +02:00
Bruno Bigras
6dabcc9ecf
Merge pull request #265996 from bbigras/veilid
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veilid: 0.2.4 -> 0.2.5
2023-11-10 13:16:44 -05:00
happysalada
463208b41e
gleam: fix darwin build
2023-11-10 18:09:33 +00:00
Connor Baker
eef729c866
Merge pull request #266077 from ConnorBaker/feat/nccl-2_19_3
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cudaPackages.nccl: 2.18.5-1 -> 2.19.3-1; build on platforms.linux
2023-11-10 12:48:35 -05:00
Artturi
b3610b80ce
Merge pull request #187100 from onny/dynd
2023-11-10 19:30:18 +02:00
Nick Cao
fab1f148ba
Merge pull request #265892 from bcdarwin/vxl-enable-tests
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vxl: enable tests
2023-11-10 12:29:43 -05:00
Lassulus
16d6d27f34
Merge pull request #266692 from Mic92/spice-gtk
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spice-gtk: fix sound (gstreamer plugins)
2023-11-10 18:28:13 +01:00
Jonathan Dickinson
e7f4921542
monaspace: init at 1.000
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Co-authored-by: Jonathan Dickinson <oss@jonathan.dickinson.id>
Co-authored-by: Anderson Torres <torres.anderson.85@protonmail.com>
2023-11-10 14:19:01 -03:00
Nick Cao
558d433d96
Merge pull request #266662 from wrbbz/pulumi-bin-3.92.0
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pulumi-bin: 3.91.1 -> 3.92.0
2023-11-10 12:10:42 -05:00
Nick Cao
f01ee0bf06
Merge pull request #266673 from NickCao/telegram-desktop
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telegram-desktop: 4.11.5 -> 4.11.6
2023-11-10 12:09:16 -05:00
R. Ryantm
a7f1cc0ce1
stress-ng: 0.17.00 -> 0.17.01
2023-11-10 17:56:49 +01:00
OTABI Tomoya
7585c07e67
Merge pull request #266636 from r-ryantm/auto-update/python311Packages.streamlit
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python311Packages.streamlit: 1.28.0 -> 1.28.1
2023-11-11 01:49:09 +09:00
OTABI Tomoya
1dbbeee925
Merge pull request #266263 from hexchen/init-ionoscloud
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python311Packages.ionoscloud: init at 6.1.8
2023-11-11 01:47:48 +09:00
OTABI Tomoya
b69c95912f
Merge pull request #266114 from tu-maurice/unstable/python-fixes
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python311Packages.geoalchemy2: 0.14.1 -> 0.14.2
2023-11-11 01:43:34 +09:00
Weijia Wang
982816eaee
Merge pull request #266670 from reckenrode/broken-darwin
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persepolis,qnotero: mark broken on Darwin for ZHF
2023-11-10 17:26:43 +01:00
P. R. d. O
681973a7c9
sherlock: 0.14.3 -> unstable-2023-10-06, use buildPythonApplication
2023-11-10 13:22:19 -03:00
7c6f434c
6d0e4478f8
Merge pull request #266664 from vbgl/gajim-1.8.3
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gajim: 1.8.2 → 1.8.3
2023-11-10 16:14:42 +00:00
Bruno Bigras
a820a9b1fa
Merge pull request #264333 from pokon548/update-todoist-electron
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todoist-electron: 8.6.0 -> 8.9.3
2023-11-10 11:09:31 -05:00
Jörg Thalheim
ba1389029e
spice-gtk: fix sound (gstreamer plugins)
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propagatedBuildInputs is not the right way to propagate runtime dependencies.
wrapGAppsHook makes sure that we have gstreamer environment set.
2023-11-10 17:04:56 +01:00
Weijia Wang
f533a7618f
Merge pull request #266580 from wegank/pillow-heif-darwin
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python311Packages.pillow-heif: fix build on darwin
2023-11-10 16:52:01 +01:00
Mahmoud Ayman
6465bb8af2
maintainers: remove atemu
2023-11-10 17:27:13 +02:00
Artturi
2e6aa8fc5d
Merge pull request #230180 from kevinmehall/jupyter-py39
2023-11-10 17:16:30 +02:00
Martin Weinelt
014a135f3b
Merge pull request #266472 from SuperSamus/radarr-sonarr-mainprogram
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{rad,son,baz,lid,read,recycl}arr: add mainProgram
2023-11-10 16:14:22 +01:00
Ben Darwin
a7b3b431e9
vxl: enable tests
2023-11-10 10:13:23 -05:00
7c6f434c
5c93b37109
Merge pull request #264760 from r-ryantm/auto-update/R
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R: 4.3.1 -> 4.3.2
2023-11-10 15:12:42 +00:00
7c6f434c
9da6f812b1
Merge pull request #266023 from r-ryantm/auto-update/octave
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octave: 8.3.0 -> 8.4.0
2023-11-10 15:12:03 +00:00
Martin Weinelt
6cd5fb6f8b
Merge pull request #263048 from Madouura/pr/triton
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Make openai-triton/pytorch free again (and various fixes)
2023-11-10 15:58:48 +01:00