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6270 Commits

Author SHA1 Message Date
github-actions[bot]
925219f62b
Merge master into staging-next 2022-05-18 18:01:13 +00:00
Artturin
cf7476804a treewide: convert string configureFlags to list of strings 2022-05-18 20:32:33 +03:00
Gabriel Ebner
cc24423641
Merge pull request #170265 from collares/lean-3.42.1 
lean: 3.42.0 -> 3.43.0
 2022-05-18 17:24:31 +02:00
Mauricio Collares
4b37f16232 lean: 3.42.1 -> 3.43.0 2022-05-18 10:30:32 -04:00
Mauricio Collares
0a449d8fff lean: 3.42.0 -> 3.42.1 2022-05-18 10:27:18 -04:00
Shea Levy
7456be85db
Merge branch 'staging-next' into staging 2022-05-18 06:40:21 -04:00
Someone Serge
b96c7caea6
mxnet: mark cuda build as broken 2022-05-18 09:48:45 +03:00
Robert Scott
39369610f8
Merge pull request #173333 from veprbl/pr/xfitter_fix 
xfitter: fix for gfortran10+
 2022-05-17 23:02:47 +01:00
Fabian Affolter
44b8ec5ccb
Merge pull request #173416 from r-ryantm/auto-update/snakemake 
snakemake: 7.6.2 -> 7.7.0
 2022-05-17 20:39:48 +02:00
Ben Darwin
5cf446f41b ezminc: mark broken 
Package refuses to build with current GCC (11), but building with older
GCC causes error linking libminc and I don't want to pin a bunch of
deps.

A newer version is available upstream but it only works with ITK 5.0
(see https://github.com/BIC-MNI/EZminc/issues/15),
but we have 4.x and 5.2.x in tree and I'm reluctant to add 5.0 just for
one package (even ITK 4.x is only used by ants and ezminc and should be
removed as soon as ants is upgraded).
 2022-05-17 10:24:07 -07:00
R. Ryantm
a52b64015a snakemake: 7.6.2 -> 7.7.0 2022-05-17 16:18:18 +00:00
Justin Bedo
e052be0a84
Merge remote-tracking branch 'origin/master' into r-updates 2022-05-17 20:57:40 +10:00
Dmitry Kalinkin
1c78ce70fa
xfitter: fix for gfortran10+ 2022-05-16 22:07:39 -04:00
Robert Scott
4f7d4241c2
Merge pull request #173279 from veprbl/pr/root5_fix 
root5: fix build with recent gcc
 2022-05-16 22:18:29 +01:00
Ivar Scholten
402cfbf73c formula: update for dotnet 6 2022-05-16 21:39:47 +02:00
Dmitry Kalinkin
fdf0806386
root5: fix build with recent gcc 2022-05-16 11:53:42 -04:00
github-actions[bot]
add75748e2
Merge staging-next into staging 2022-05-16 12:03:45 +00:00
7c6f434c
1d4c47ea08
Merge pull request #171511 from collares/sage-9.6 
sage: 9.5 -> 9.6
 2022-05-16 09:51:47 +00:00
github-actions[bot]
e2602ad62e
Merge staging-next into staging 2022-05-16 00:04:11 +00:00
Mauricio Collares
26a87ada65 sage: 9.5 -> 9.6 2022-05-15 19:23:40 -04:00
Dmitry Kalinkin
8e24a6db2e nnpdf: init at 4.0.4 2022-05-15 16:00:00 -07:00
Mauricio Collares
10b16ea5e7 sageWithDoc: make jupyter-sphinx available for docbuild 2022-05-15 12:45:25 -04:00
Mauricio Collares
09ab2aba13 lrcalc: 1.2 -> 2.1 2022-05-15 12:45:24 -04:00
Jan Tojnar
d1b77f990f Merge branch 'staging-next' into staging 
Conflicts:
	pkgs/applications/networking/browsers/firefox/common.nix between f6c5761935 and a373324120.
 2022-05-15 07:08:29 +02:00
Jörg Thalheim
3d4109f3a4
Merge pull request #172588 from res0Nanz/patch-1 
wolfram-engine: fix quotes in installation script
 2022-05-14 19:27:38 +01:00
AndersonTorres
91621176e0 primecount: 7.2 -> 7.3 2022-05-14 11:01:08 -03:00
AndersonTorres
d488388cfc primesieve: 7.8 -> 7.9 2022-05-14 10:56:13 -03:00
Sergei Trofimovich
0b3eecc56f gerbv: pull fix pending upstream inclusion for -fno-common toolchains 
Without the change build fails on upstream gcc-10 as:

    ld: interface.o:/build/gerbv/src/callbacks.h:50: multiple definition of
      `toggle_layer'; callbacks.o:/build/gerbv/src/callbacks.h:50: first defined here
    ld: interface.o:/build/gerbv/src/callbacks.h:44: multiple definition of
      `CALLBACKS_SAVE_FILE_TYPE'; callbacks.o:/build/gerbv/src/callbacks.h:44: first defined here
    ld: render.o:/build/gerbv/src/callbacks.h:44: multiple definition of
      `CALLBACKS_SAVE_FILE_TYPE'; callbacks.o:/build/gerbv/src/callbacks.h:44: first defined here
 2022-05-14 13:41:11 +01:00
Sergei Trofimovich
deaab56289 freebayes: add -fcommon workaround 
Workaround build failure on -fno-common toolchains like upstream
gcc-10. Otherwise build fails as:

    ld: foomatic_rip-options.o:/build/foomatic-filters-4.0.17/options.c:49: multiple definition of `cupsfilter';
      foomatic_rip-foomaticrip.o:/build/foomatic-filters-4.0.17/foomaticrip.c:158: first defined here
 2022-05-14 13:19:17 +01:00
Sergei Trofimovich
d45dfee2d6 eukleides: add -fcommon workaround 
Workaround build failure on -fno-common toolchains like upstream
gcc-10. Otherwise build fails as:

    ld: eukleides_build/triangle.o:(.bss+0x28): multiple definition of `A';
        eukleides_build/quadrilateral.o:(.bss+0x18): first defined here
 2022-05-14 10:28:22 +01:00
tomberek
ca885c3ac1
Merge pull request #172933 from armeenm/bump-alliance 
alliance: unstable-2021-09-15 -> unstable-2022-01-13
 2022-05-14 00:25:21 -04:00
Armeen Mahdian
d912addd5a alliance: unstable-2021-09-15 -> unstable-2022-01-13 2022-05-13 17:18:09 -05:00
Sergei Trofimovich
ff22bc1ff6 chemtool: add -fcommon workaround 
Workaround build failure on -fno-common toolchains like upstream
gcc-10. Otherwise build fails as:

    ld: inout.o:/build/chemtool-1.6.14/ct1.h:279: multiple definition of
      `outtype'; draw.o:/build/chemtool-1.6.14/ct1.h:279: first defined here
 2022-05-13 21:30:28 +01:00
github-actions[bot]
fe71877bbd
Merge staging-next into staging 2022-05-13 18:03:04 +00:00
Gabriel Ebner
d04ae3049e
Merge pull request #172885 from armeenm/fix-aspino 
aspino: 2017-03-09 -> 2018-03-24
 2022-05-13 18:39:20 +02:00
markuskowa
78075c4443
Merge pull request #172868 from markuskowa/upd-molcas 
openmolcas: 21.10 -> 22.02
 2022-05-13 18:07:39 +02:00
Armeen Mahdian
f779b60d20 aspino: 2017-03-09 -> 2018-03-24 2022-05-13 10:53:37 -05:00
Markus Kowalewski
45083c5d1d
openmolcas: 21.10 -> 22.02 
* make MPI optional instead of default
* allow optional MKL build/switch wrapped BLAS interface
 2022-05-13 17:06:11 +02:00
Sandro
741d2d2578
Merge pull request #172846 from LeSuisse/bayescan-c++14-zhf 
bayescan: fix the build
 2022-05-13 17:03:05 +02:00
Guanpeng Xu
cefda1c7ca
Mathematica: refactored (#172136) 2022-05-13 14:16:50 +00:00
github-actions[bot]
814126147f
Merge staging-next into staging 2022-05-13 12:02:03 +00:00
Thomas Gerbet
44c1590f1f bayescan: fix the build 
Moved back to C++14 to avoid the new errors and warnings introduced with
C++17.
 2022-05-13 12:00:08 +02:00
Philipp Middendorf
93332c2779 CrystFEL: init at 0.10.1 2022-05-13 07:09:53 +02:00
Vincent Laporte
1f11888116 Revert "coqPackages: etc" 
This reverts commit 7e589a45ef.
 2022-05-13 06:47:14 +02:00
Vincent Laporte
215235cce5 Revert "moving findlib to propagedNativeBuildInputs" 
This reverts commit 82440c9374.
 2022-05-13 06:47:14 +02:00
github-actions[bot]
d79af4efe4
Merge staging-next into staging 2022-05-13 00:03:35 +00:00
Thiago Kenji Okada
5c5187646d
Merge pull request #172366 from ncfavier/wrappers-cleanup 
make{,Binary}Wrapper: some cleanups
 2022-05-12 22:17:34 +01:00
Thiago Kenji Okada
eae1669de5
Merge pull request #171836 from ncfavier/escape-wrapper-args 
Fix wrapper arguments escaping
 2022-05-12 21:55:06 +01:00
Thomas Gerbet
1ba72de384 ripser: 1.0.0 -> 1.2.1 
https://github.com/Ripser/ripser/releases/tag/v1.0.1
https://github.com/Ripser/ripser/releases/tag/v1.1
https://github.com/Ripser/ripser/releases/tag/v1.2
https://github.com/Ripser/ripser/releases/tag/v1.2.1
 2022-05-12 08:26:44 -07:00
Naïm Favier
3c77d361b5
makeShellWrapper: add explicitly named attribute 
So that things that use the makeShellWrapper/wrapProgramShell
functions can depend on makeShellWrapper explicitly, which should ease
migration in the future.
 2022-05-12 11:01:23 +02:00
Thiago Kenji Okada
1919e181fb
Merge pull request #172641 from WolfangAukang/monosat-fix 
python3Packages.monosat: disable failing tests
 2022-05-12 10:01:16 +01:00
Rick van Schijndel
716bc55f98
Merge pull request #172443 from a-m-joseph/pr/zhf/vhd2vl 
vhd2vl: fix the tests
 2022-05-12 10:06:04 +02:00
Adam Joseph
5d44c9a222 vhd2vl: fix the tests 
The testing scheme for vhd2vl is sensitive to subtle shifts in
iverilog's parenthesization choices, meaning that the golden test
outputs require constant maintenance.

The patch previously applied in order to deal with this situation is
no longer sufficient, so a patch which is sufficient has been added.

Also, the `buildTargets` and `checkTarget` attributes have been set,
so future benign failures of this sort can be dealt with through
`doCheck=false` in a pinch.
 2022-05-11 23:59:59 -07:00
Cyril Cohen
82440c9374 moving findlib to propagedNativeBuildInputs 2022-05-12 06:11:43 +02:00
Cyril Cohen
7e589a45ef coqPackages: etc 
- use propagatedBuildInputs to make sure ocaml plugin stuff is in path
- updated coqPackage.heq (broken url)
- fixed use of `DESTDIR` and `COQMF_COQLIB` in mkCoqDerivation
- adding `COQCORELIB` environement variable to put ocaml plugin files in the right place
- make metaFetch available from `coqPackages`
 2022-05-12 06:11:43 +02:00
P. R. d. O
17be6f75ce
python3Packages.monosat: disable failing tests 2022-05-11 18:29:58 -06:00
Sandro
324a5be95c
Merge pull request #172580 from collares/singular-osx 
singular: fix darwin build
 2022-05-12 01:33:52 +02:00
Yu-Chen Ding
e98f71d477
wolfram-engine: fix quotes in installation script 2022-05-12 01:29:53 +08:00
Mauricio Collares
15cf12c0ac singular: fix darwin build 2022-05-11 12:08:20 -04:00
Markus Kowalewski
1e2065983e
octopus: 11.3 -> 11.4 2022-05-11 14:01:02 +02:00
Theodore Ni
81046b393b
bowtie: fix build on case insensitive file systems 
Add a patch that removes the current source directory from the include
search path during compilation so that #include <version> does not end
up picking the VERSION source code file.
 2022-05-11 03:20:03 -05:00
Theodore Ni
802a8416b6
bowtie: add arm64 patch to build on M1 Macs 
This does not fix the build on Macs, but it brings the build on M1 Macs
to parity with non-M1 Macs.
 2022-05-11 02:36:56 -05:00
davidak
7dd05c6052
Merge pull request #171662 from Hexadecimaaal/wolfram-engine 
wolfram-engine: infinite loop on `WolframKernel`; `wolframscript` available in package but not installed
 2022-05-11 02:53:23 +02:00
Artturi
6c7e0653c2
Merge pull request #172356 from zaninime/nanovna-zhf 
nanovna-saver: 0.3.8 -> 0.4.0
 2022-05-11 03:35:13 +03:00
Naïm Favier
62245943aa
makeWrapper,makeBinaryWrapper: introduce explicitly named functions 
Because both versions might end up in a derivation's build inputs, it
might be useful to be able to explicitly select which function to use.
 2022-05-10 22:07:56 +02:00
Mustafa Çalışkan
f24cf4422d maintainers: change musfay to muscaln 2022-05-10 21:34:19 +03:00
Francesco Zanini
d404697e7c nanovna-saver: 0.3.8 -> 0.4.0 2022-05-10 18:18:55 +02:00
Thiago Kenji Okada
c4956c85b4
Merge pull request #172320 from xaverdh/binary-wrapper-fixes 
treewide: use non-binary wrapper for wrapGAppsHook where appropriate
 2022-05-10 17:07:26 +01:00
Markus Kowalewski
5fd7f4ef82
molden: unbreak build, make compatible with gcc-10 2022-05-10 17:01:35 +02:00
Dominik Xaver Hörl
86e7fa945e tlaplusToolbox: use non-binary wrapper for wrapGAppsHook 
The use of --add-flags in this derivation does not work with binary
    wrappers, which wrapGAppsHook uses since #164163.
 2022-05-10 15:13:58 +02:00
Markus Kowalewski
de869f039d
siesta: fix hardcoded path to rm 2022-05-10 12:53:22 +02:00
Lassulus
d369c0c118
Merge pull request #163869 from r-ryantm/auto-update/gurobi 
gurobi: 9.5.0 -> 9.5.1
 2022-05-10 11:46:25 +02:00
Lassulus
5ed1d2ff8f
Merge pull request #163885 from r-ryantm/auto-update/ott 
ott: 0.31 -> 0.32
 2022-05-10 11:45:47 +02:00
Artturi
6d007b2ce4
Merge pull request #172250 from Artturin/ridofnulls 
remove some useless null asserts
 2022-05-10 04:24:31 +03:00
Artturin
5007ea281d gwyddion: remove useless nulls 2022-05-10 00:56:23 +03:00
davidak
0bc16c7f2b
Merge pull request #172182 from markuskowa/fix-siesta 
siesta: fix build for gcc/gfortran-10/11
 2022-05-09 15:16:40 +02:00
Markus Kowalewski
a5e2f0f410
siesta: fix build for gcc/gfortran-10/11 2022-05-09 14:31:16 +02:00
Sandro
c1daf2ae36
Merge pull request #170792 from grindhold/elmerfix 
elmerfem: make elmerfem-9.0 run properly
 2022-05-09 12:00:52 +02:00
grindhold
865d79bb5b elmerfem: make elmerfem-9.0 properly 
0) ElmerGUI displays things in the Model tree on the
     left screen side again
  1) Enable the import of STEP- and other opencascade-
     based formats
  2) Patch the source to enable builds with gcc-11
  3) Build the Qt5 version instead of the Qt4 version
 2022-05-09 10:41:56 +02:00
Sandro
20b3e2f83d
Merge pull request #172079 from lschuermann/dev/horizon-eda-2.3.0 
horizon-eda: 2.2.0 -> 2.3.0
 2022-05-09 01:16:46 +02:00
Sandro
5c1adf9ffd
Merge pull request #168576 from evils/kicad-unstable 2022-05-08 23:50:51 +02:00
Sandro
a0aeb0dc1e
Merge pull request #171765 from evils/kicad-6.0.5 
kicad: 6.0.4 -> 6.0.5
 2022-05-08 23:50:32 +02:00
Leon Schuermann
c353f171b9 horizon-eda: 2.2.0 -> 2.3.0 
Signed-off-by: Leon Schuermann <leon@is.currently.online>
 2022-05-08 20:57:06 +02:00
Bobby Rong
0542fa89a7
Merge pull request #171479 from tpwrules/fix-qgroundcontrol-build 
qgroundcontrol: fix build
 2022-05-08 20:26:58 +08:00
Sergei Trofimovich
428045f39b bwa: pull upstream fix for -fno-common tollchains 
Without the change build fails on -fno-common toolchains like upstream
gcc-10 as:

    $ nix build -L --impure --expr 'with import ./. {}; bwa.overrideAttrs (oa: {   NIX_CFLAGS_COMPILE = (oa.NIX_CFLAGS_COMPILE or "") + "-fno-common"; })'
    ...
    ld: ./libbwa.a(rope.o):/build/bwa-0.7.17/rle.h:33:
      multiple definition of `rle_auxtab'; ./libbwa.a(bwtindex.o):/build/bwa-0.7.17/rle.h:33: first defined here
    ld: ./libbwa.a(rle.o):/build/bwa-0.7.17/rle.h:33:
      multiple definition of `rle_auxtab'; ./libbwa.a(bwtindex.o):/build/bwa-0.7.17/rle.h:33: first defined here
 2022-05-08 08:56:43 +01:00
R. Ryantm
5b55f851ac snakemake: 7.6.1 -> 7.6.2 2022-05-07 16:16:09 +00:00
Hexadecimal
94c5433df2
wolfram-engine: fix wrappers 2022-05-07 10:13:57 +08:00
Naïm Favier
76f93323f2
qucs-s: fix wrapper arguments escaping 2022-05-06 18:29:50 +02:00
Evils
3592ccf6cc kicad-unstable: 2022-03-19 -> 2022-05-06 2022-05-06 06:20:03 +02:00
Evils
64436e0df5 kicad: 6.0.4 -> 6.0.5 2022-05-06 04:48:05 +02:00
Bernardo Meurer
e6b94ad07e
Merge pull request #171602 from malob/treewide-mainProgram 
treewide: add meta.mainProgram to many packages
 2022-05-05 18:16:09 -07:00
Will Dietz
4b79fa29a6 verilator: 4.220 -> 4.222 2022-05-05 12:15:54 -05:00
Fabian Affolter
ad619e60da
Merge pull request #171548 from r-ryantm/auto-update/snakemake 
snakemake: 7.5.0 -> 7.6.1
 2022-05-05 09:06:17 +02:00
Vincent Laporte
c777cdf5c5 easycrypt-runtest: init at 2022.04 2022-05-05 06:57:50 +02:00
Vincent Laporte
b20934a65c easycrypt: init at 2022.04 2022-05-05 06:57:50 +02:00
Malo Bourgon
16e15fa68f treewide: add meta.mainProgram to many packages 2022-05-04 18:08:19 -07:00
R. Ryantm
166b1378fe snakemake: 7.5.0 -> 7.6.1 2022-05-04 16:06:44 +00:00
Thomas Watson
8030981007 qgroundcontrol: fix build 
Fixes build problems on x86_64 caused by a bug in their vendored version of
gst-plugins-good. Unfortunately I can't `fetchpatch` the fix because it just
changes a submodule pointer. The patch I added was generated from the fix at
https://github.com/mavlink/qgroundcontrol/issues/10140 .
 2022-05-03 20:57:46 -05:00
Luis Pedro Coelho
596c5e7ea2 Static bwa 
AR needs to be passed specifically on the command line
 2022-05-04 02:20:50 +02:00
Luis Pedro Coelho
4758873378 Static build for samtools 
Curses is not supported (it may be possible to support it)
 2022-05-04 02:16:17 +02:00
Luis Pedro Coelho
0b1c28d5a1 Static build for megahit 2022-05-04 02:13:31 +02:00
Fabian Affolter
b10e012588
Merge pull request #171121 from fabaff/pathy-clean 
python310Packages.smart-open: 5.2.1 -> 6.0.0, python39Packages.spacy: 3.2.4 -> 3.3.0, snakemake: 6.15.5 -> 7.5.0
 2022-05-02 12:33:22 +02:00
Fabian Affolter
8b176291d7 snakemake: 6.15.5 -> 7.5.0 2022-05-01 13:02:10 +02:00
Vladimír Čunát
c480cc2895
Merge branch 'master' into staging-next-2022-04-23 2022-04-30 23:02:28 +02:00
Guillaume Girol
03e1b22740
Merge pull request #170413 from jdupak/master 
QtRVSim: 0.9.2 -> 0.9.3
 2022-04-29 18:42:50 +00:00
Bruno Bzeznik
5661ca1a2d adolc: init at 2.7.2 2022-04-29 10:38:40 -05:00
R. Ryantm
a82b1b63c3 blast: 2.12.0 -> 2.13.0 2022-04-29 09:39:10 -05:00
Vladimír Čunát
8caa1418f6
Merge branch 'master' into staging-next-2022-04-23 2022-04-28 18:04:16 +02:00
Serge K
1248ea16e1
colmap: fix for cuda11.6/gcc11 (#169623) 
* colmap: force nvcc std=c++14 after gcc11 bump

* colmap: optional -> optionals

* colmap: sha256 -> hash

* colmapWithCuda: force CUDA_ENABLED=ON safeguard

* colmapWithCuda: add opengl runpath
 2022-04-27 16:09:30 -07:00
github-actions[bot]
8261a7aaba
Merge master into staging-next 2022-04-27 00:02:17 +00:00
Justin Bedo
5eb9f35c44
R: 4.1.3 -> 4.2.0 
Patch needed to past test, as there are extra warnings
in a sandbox build due to lack of internet access.
x
 2022-04-27 09:55:00 +10:00
Ryan Mulligan
9fc849704f
Merge pull request #169916 from r-ryantm/auto-update/mavproxy 
mavproxy: 1.8.48 -> 1.8.49
 2022-04-26 16:31:50 -07:00
github-actions[bot]
f8c265f433
Merge master into staging-next 2022-04-26 06:01:08 +00:00
Rick van Schijndel
4586388f85
Merge pull request #170320 from andersk/negated-version 
treewide: Simplify negated uses of versionAtLeast, versionOlder
 2022-04-26 07:50:15 +02:00
Sandro
7deb7b084d
Merge pull request #170020 from Ma27/bump-stellarium 
stellarium: 0.22.0 -> 0.22.1
 2022-04-26 02:37:56 +02:00
Anders Kaseorg
00e66f10fa coq: Rename internal versionAtLeast helper to coqAtLeast 
To avoid potential confusion with lib.versionAtLeast.

Signed-off-by: Anders Kaseorg <andersk@mit.edu>
 2022-04-25 13:35:06 -07:00
github-actions[bot]
073cad8fd6
Merge master into staging-next 2022-04-25 12:04:02 +00:00
markuskowa
b656483a05
Merge pull request #170240 from r-ryantm/auto-update/gromacs 
gromacs: 2022 -> 2022.1
 2022-04-25 13:54:46 +02:00
Jakub Dupak
773f7905b9 QtRVSim: 0.9.2 -> 0.9.3 2022-04-25 14:38:39 +03:00
R. Ryantm
0d56b692fa gromacs: 2022 -> 2022.1 2022-04-25 11:09:40 +00:00
Gabriel Ebner
5838726cb9 calculix: 2.17 -> 2.19 2022-04-25 12:56:36 +02:00
Gabriel Ebner
94f1225197 calculix: fix build with gfortran 10 2022-04-25 12:51:12 +02:00
Sandro
2f517412c4
Merge pull request #165477 from rbreslow/dcm2niix-optional-modules 2022-04-25 11:59:49 +02:00
github-actions[bot]
6a14b5834e
Merge master into staging-next 2022-04-25 00:02:35 +00:00
Ryan Mulligan
f05a748058
Merge pull request #169246 from r-ryantm/auto-update/bada-bib 
bada-bib: 0.6.1 -> 0.6.2
 2022-04-24 13:58:11 -07:00
R. Ryantm
e66cf9c6c8 elan: 1.4.0 -> 1.4.1 2022-04-24 14:14:48 -04:00
Maximilian Bosch
7c2fd0ae5d
stellarium: 0.22.0 -> 0.22.1 
ChangeLog: https://github.com/Stellarium/stellarium/releases/tag/v0.22.1
 2022-04-23 23:46:33 +02:00
Vladimír Čunát
82ec893b68
Merge branch 'staging' into staging-next 2022-04-23 18:10:57 +02:00
R. Ryantm
8914714916 mavproxy: 1.8.48 -> 1.8.49 2022-04-23 08:24:30 +00:00
Artturi
785373a76f
Merge pull request #166605 from siraben/remove-redundant-stdenv 2022-04-22 20:25:38 +03:00
Artturin
f1c7f19e49 treewide: testVersion -> testers.testVersion 2022-04-22 16:24:27 +03:00
Mauricio Collares
0f29ab871f sage: update test expectations 2022-04-21 09:08:41 +02:00
Mauricio Collares
5029df7737 giac: 1.6.0-47 -> 1.9.0-5 2022-04-21 09:08:40 +02:00
Jan van Brügge
9aa4c5dbfc
isabelle: Make closer to upstream 
This makes isabelle use the versions of polyml and z3 that are also used
upstream. Additionally it packages the sha1 library that isabelle uses.

Co-authored-by: 1000teslas <47207223+1000teslas@users.noreply.github.com>
 2022-04-20 11:22:43 +02:00
Jan van Brügge
2e52d5c892
naproche: 0.1.0.0 -> 2022-04-19 
This fixes the build with GHC 9
 2022-04-20 09:14:24 +02:00
veprbl
2511bad8aa
Merge pull request #168973 from veprbl/pr/root5_glibc_fix 
root5: fix for glibc
 2022-04-19 14:56:09 -04:00
ajs124
7d59bd47d2
Merge pull request #165341 from r-ryantm/auto-update/verilator 
verilator: 4.218 -> 4.220
 2022-04-19 17:52:10 +01:00
R. Ryantm
9919952421 bada-bib: 0.6.1 -> 0.6.2 2022-04-19 00:53:01 +00:00
Rocky Breslow
d1c3fea7ec
dcm2niix: support usage of suggested Cloudflare zlib 2022-04-18 15:00:45 -04:00
Rocky Breslow
9019ce0106
dcm2niix: add maintainer 
Also, fix grammatical error in long description.
 2022-04-18 15:00:16 -04:00
Sandro
f37f0ad4e1
Merge pull request #168969 from SuperSandro2000/staging-next-sandro 
Staging next fixes
 2022-04-17 00:35:09 +02:00
Dmitry Kalinkin
81f9e28844
root5: fix for glibc 2022-04-16 17:20:16 -04:00
Martin Weinelt
fa1bb283d8 Merge remote-tracking branch 'origin/master' into staging-next 2022-04-16 23:14:55 +02:00
Sandro Jäckel
f1189d812e
fast-downward: substitute version, fix buildInputs, minor cleanup 2022-04-16 22:46:45 +02:00
veprbl
bb5678ef5f
Merge pull request #168733 from veprbl/pr/xfitter_2_2_0 
xfitter: 2.0.1 -> 2.2.0
 2022-04-16 16:01:10 -04:00
Ben Siraphob
259fa13d53 treewide: remove nativeBuildInputs that are in stdenv 2022-04-16 21:46:46 +03:00
Fabián Heredia Montiel
5275050ab0 fityk: add -std=c++11 flag for gcc11 and later 2022-04-16 11:11:46 -05:00
Fabián Heredia Montiel
8c5a58144d fast-downward: 19.12 → 21.12.0 2022-04-16 11:11:46 -05:00
Dmitry Kalinkin
cdc17db882
xfitter: 2.0.1 -> 2.2.0 2022-04-15 22:24:52 -04:00
Fabián Heredia Montiel
8a9d5e296b cmtk: add -std=c++11 to fix build on gcc11 2022-04-15 11:15:30 -05:00
Martin Weinelt
a7fc5aaa76 Merge remote-tracking branch 'origin/master' into staging-next 2022-04-15 13:30:48 +02:00
Lassulus
92734ac395
Merge pull request #166865 from malob/treewide-mainProgram 
treewide: add meta.mainProgram to many packages
 2022-04-15 09:28:00 +01:00
Malo Bourgon
0e802eafad treewide: add meta.mainProgram to many packages 2022-04-14 10:24:01 -07:00
Vladimír Čunát
d5d94127fd
Merge branch 'staging-next' into staging 
Minor conflicts; I hope I didn't mess up:
	pkgs/development/tools/misc/binutils/default.nix
	pkgs/games/openjk/default.nix
 2022-04-14 09:53:21 +02:00
R. Ryantm
ae6932e7b9 elan: 1.3.1 -> 1.4.0 2022-04-13 20:56:11 -04:00
Luflosi
0a2f8109f4 abc-verifier: 2022.03.04 -> 2022.03.22 2022-04-12 08:38:25 -05:00
Lassulus
8ca12e04fe
Merge pull request #162172 from grnnja/init-jflap 
jflap: init at 7.1
 2022-04-12 12:08:26 +01:00
ajs124
9aa337095c
Merge pull request #164699 from r-ryantm/auto-update/mavproxy 
mavproxy: 1.8.46 -> 1.8.48
 2022-04-11 20:13:29 +01:00
Sandro
ab1640b19b
Merge pull request #166909 from fedeinthemix/wolfram-engine-2 2022-04-11 13:53:05 +02:00
Federico Beffa
55a070a616 wolfram-for-jupyter-kernel: init at 0.9.2 
Also, add a script 'wolfram-notebook' to easily start a jupyter
notebook for working with the Wolfram Engine.

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-04-11 11:54:09 +02:00
Federico Beffa
2055f85304 wolfram-engine: init at 13.0.1 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-04-11 11:54:03 +02:00
Sandro
9b0ef251b3
Merge pull request #167729 from yuuyins/brmodelo 2022-04-10 21:19:44 +02:00
Fabian Affolter
394c9ba5e4
Merge pull request #168132 from r-ryantm/auto-update/calc 
calc: 2.14.0.14 -> 2.14.1.0
 2022-04-10 20:56:16 +02:00
github-actions[bot]
bf63dd7434
Merge staging-next into staging 2022-04-10 18:01:38 +00:00
Vladimír Čunát
5e845236f2
Merge branch 'staging-next' into staging 2022-04-10 17:11:36 +02:00
Doron Behar
357ca2e62c
Merge pull request #168130 from alyaeanyx/qalculate-gtk-4.1.1 2022-04-10 16:39:23 +03:00
Lassulus
973fa1917c
Merge pull request #162300 from r-ryantm/auto-update/cwltool 
cwltool: 3.1.20220221074232 -> 3.1.20220224085855
 2022-04-10 13:37:54 +01:00
R. Ryantm
6ebcd043e2 calc: 2.14.0.14 -> 2.14.1.0 2022-04-10 12:33:50 +00:00
alyaeanyx
0fc77bcb21
qalculate-gtk: 4.1.0 -> 4.1.1 2022-04-10 13:59:30 +02:00
Artturi
ebf6f84ea2
Merge pull request #164722 from armeenm/bump-eggnog-mapper 
eggnog-mapper: 1.0.3 -> 2.1.7
 2022-04-10 14:37:21 +03:00
R. Ryantm
2fd4f690a9 xmedcon: 0.21.2 -> 0.22.0 2022-04-10 05:36:08 +00:00
github-actions[bot]
28c6c88d42
Merge staging-next into staging 2022-04-10 00:02:52 +00:00
Thiago Kenji Okada
615e5e10c1
Merge pull request #166740 from shadaj/init-cvc5-symfpu 
cvc5: init at 1.0.0 & symfpu: init at 8fbe139b
 2022-04-09 20:07:29 +01:00
github-actions[bot]
f303d4de3b
Merge staging-next into staging 2022-04-09 12:02:07 +00:00
Frederik Rietdijk
1d63f89caa cudaPackages: overhaul of how we package cuda packages 
There are many different versions of the `cudatoolkit` and related
cuda packages, and it can be tricky to ensure they remain compatible.

- `cudaPackages` is now a package set with `cudatoolkit`, `cudnn`, `cutensor`, `nccl`, as well as `cudatoolkit` split into smaller packages ("redist");
- expressions should now use `cudaPackages` as parameter instead of the individual cuda packages;
- `makeScope` is now used, so it is possible to use `.overrideScope'` to set e.g. a different `cudnn` version;
- `release-cuda.nix` is introduced to easily evaluate cuda packages using hydra.
 2022-04-09 08:50:22 +02:00
yuu
7203cae13b
brmodelo: init at 3.31 
Co-authored-by: Sandro Jäckel <sandro.jaeckel@gmail.com>
 2022-04-08 11:45:42 -03:00
github-actions[bot]
1266a252ca
Merge staging-next into staging 2022-04-08 00:02:53 +00:00
Artturi
f087013f8e
Merge pull request #167679 from collares/sage-networkx27 
sage: post python-unstable/staging-next merge fixes
 2022-04-07 23:29:10 +03:00
Mauricio Collares
79cc492ceb sage: set CXXFLAGS to match CFLAGS in sage-env 2022-04-07 14:20:43 +02:00
Mauricio Collares
384117bb95 sage: import scipy 1.8 update patch 2022-04-07 14:20:42 +02:00
zowoq
3a70d5dc83 Merge remote-tracking branch 'origin/staging-next' into staging 
Conflicts:
	pkgs/development/compilers/go/2-dev.nix
 2022-04-07 22:12:13 +10:00
Mauricio Collares
9e80144a8b sage: refresh ipython update patch for ipython 8.1 compat 2022-04-07 14:06:55 +02:00
Mauricio Collares
49cddf1a78 sage: import networkx 2.7 update patch 2022-04-07 14:06:55 +02:00
Frederik Rietdijk
a7bbda4271
Merge pull request #167250 from SomeoneSerge/bump-cudatoolkit 
cudatoolkit: 10.2 -> 11.5
 2022-04-07 13:40:43 +02:00
R. Ryantm
241de3da58 wxmaxima: 21.11.0 -> 22.03.0 2022-04-07 01:42:41 +00:00
Shadaj Laddad
74b7319023 cvc5: init at 1.0.0 2022-04-06 21:20:40 +00:00
github-actions[bot]
241b3652c3
Merge staging-next into staging 2022-04-06 12:01:50 +00:00
Eelco Dolstra
9c60061edc
Merge pull request #165730 from ConnorBaker/z3_versions 
z3: init 4.8.15, 4.7.1
 2022-04-06 12:47:33 +02:00
Someone Serge
1b74f75b59
python310Packages.caffe: mark as broken 2022-04-06 00:44:37 +03:00
Someone Serge
565201d769
python310Packages.mxnet: mark cudaSupport broken 2022-04-06 00:44:36 +03:00
Someone Serge
226fabb1a6
python3Packages.mxnet: pass explicit cuda gencodes 2022-04-06 00:44:35 +03:00
Connor Baker
923fad863c
z3: Remove unused fetchpatch 2022-04-05 09:22:52 -04:00
github-actions[bot]
3063a8ea39
Merge staging-next into staging 2022-04-05 12:10:46 +00:00
github-actions[bot]
27a4e52731
Merge master into staging-next 2022-04-05 12:05:41 +00:00
7c6f434c
be0ceba455
Merge pull request #167252 from r-ryantm/auto-update/jmol 
jmol: 14.32.39 -> 14.32.45
 2022-04-05 10:18:22 +00:00
Martin Weinelt
bf1914e12a Merge remote-tracking branch 'origin/staging-next' into staging 2022-04-05 04:05:02 +02:00
github-actions[bot]
120925b5cb
Merge master into staging-next 2022-04-05 00:02:06 +00:00
R. Ryantm
1f032adb49 jmol: 14.32.39 -> 14.32.45 2022-04-04 22:28:33 +00:00
Ryan Mulligan
b56cf0ed6a
Merge pull request #167069 from r-ryantm/auto-update/bada-bib 
bada-bib: 0.6.0 -> 0.6.1
 2022-04-04 13:51:15 -07:00
Shadaj Laddad
2d1621012c symfpu: init at unstable-2019-05-17 2022-04-04 20:30:28 +00:00
Martin Weinelt
c6476294e1 Merge remote-tracking branch 'origin/master' into staging-next 2022-04-04 18:40:34 +02:00
ajs124
dcf19469a8
Merge pull request #167192 from jb55/remove-me 
remove jb55 as maintainer from some packages
 2022-04-04 17:36:00 +02:00
William Casarin
a1390787c3 remove jb55 as maintainer from some packages 
I no longer use these and don't have much incentive to maintain them :(
 2022-04-04 08:10:42 -07:00
Rocky Breslow
09b7444b82
dcm2niix: add support for configuring optional compile-time modules 
Right now, the dcm2niix package produces a single binary without support for
dcm2niibatch, JPEG-LS, OpenJPEG, or an alternative zlib library. The official
build process for dcm2niix configures all these options (minus batch support). I
was motivated to make these changes so my organization could process JPEG 2000
imagery using the Nix binary.
 2022-04-04 10:41:27 -04:00
ajs124
b52d39ee09 eagle7: drop 2022-04-04 15:10:44 +01:00
Martin Weinelt
f95a3d1140 Merge remote-tracking branch 'origin/staging-next' into staging 2022-04-04 00:46:25 +02:00
R. Ryantm
2a5b81d50f bada-bib: 0.6.0 -> 0.6.1 2022-04-03 19:11:54 +00:00
github-actions[bot]
c46200d454
Merge master into staging-next 2022-04-03 18:01:07 +00:00
ajs124
672ea43d0e otter: remove after being marked broken for over two years 
It was marked in commit ca0e724266 by Tuomas Tynkkynen on 2016-04-27 (commited on 2016-04-27)
 2022-04-03 16:14:59 +01:00
ajs124
64a3d95fc1 openspace: remove after being marked broken for over two years 
It was marked in commit e6223c022b by Jonathan Ringer on 2019-07-14 (commited on 2019-07-14)
 2022-04-03 16:14:56 +01:00
ajs124
f9ad6fb744 openmvs: remove after being marked broken for over two years 
It was marked in commit 796050fedd by Michael Raskin on 2019-04-14 (commited on 2019-04-14)
 2022-04-03 16:14:19 +01:00
ajs124
60f1e6ffe2 ncbi_tools: remove after being marked broken for over two years 
It was marked in commit b9948fedc6 by Robin Gloster on 2017-03-30 (commited on 2017-03-30)
 2022-04-03 16:14:18 +01:00
ajs124
33e8308dbc lean2: remove after being marked broken for over two years 
It was marked in commit 5aa4b19946 by Linus Heckemann on 2019-10-07 (commited on 2019-10-08)
 2022-04-03 16:14:16 +01:00
ajs124
90c42fa33f jonprl: remove after being marked broken for over two years 
It was marked in commit 5aa4b19946 by Linus Heckemann on 2019-10-07 (commited on 2019-10-08)
 2022-04-03 16:14:16 +01:00
github-actions[bot]
9aa014c46a
Merge staging-next into staging 2022-03-31 12:02:10 +00:00
Alyssa Ross
ac5a927919
Merge remote-tracking branch 'nixpkgs/master' into staging-next 
Conflicts:
	pkgs/development/python-modules/einops/default.nix
	pkgs/development/python-modules/elegy/default.nix
 2022-03-31 11:46:46 +00:00
Alyssa Ross
22c23dbb8d
Merge remote-tracking branch 'nixpkgs/staging-next' into staging 
Conflicts:
	pkgs/development/python-modules/google-auth-oauthlib/default.nix
 2022-03-31 11:42:24 +00:00
Ben Siraphob
5187709ff7
Merge pull request #166508 from siraben/automake-buildinputs 2022-03-31 03:15:41 -05:00
github-actions[bot]
3c526dbe2c
Merge master into staging-next 2022-03-31 06:01:18 +00:00
Ben Siraphob
cbbef27aa9
Merge pull request #166527 from siraben/nuxmv-darwin 2022-03-30 23:44:48 -05:00
Ben Siraphob
0535074d17
nuXmv: fix darwin build 2022-03-30 23:43:21 -05:00
Martin Weinelt
d0bfb3ccbb Merge remote-tracking branch 'origin/master' into staging-next 2022-03-31 03:49:37 +02:00
Ben Siraphob
21faf9fc29
treewide: move autoconf, automake to nativeBuildInputs 2022-03-30 20:17:24 -05:00
Oleksii Filonenko
cade4603c3
Merge pull request #166120 from r-ryantm/auto-update/rink 2022-03-30 20:24:36 +03:00
Connor Baker
57961e1a5e z3: remove 4.6.0 and 4.5.0 2022-03-29 23:46:27 -04:00
Sandro
71d8b69306
Merge pull request #166144 from alyaeanyx/gprojector-3.0.3 2022-03-30 02:17:50 +02:00
github-actions[bot]
5a9b6a3f1a
Merge master into staging-next 2022-03-29 12:06:05 +00:00
Sandro
1f6bdf4d93
Merge pull request #165458 from rbreslow/add-flywheel-cli 2022-03-29 13:33:54 +02:00
alyaeanyx
aa931a46e0
gprojector: 3.0.2 -> 3.0.3 2022-03-28 23:56:35 +02:00
Rocky Breslow
603e9d7b64
flywheel-cli: init at 16.2.0 2022-03-28 15:54:39 -04:00
R. Ryantm
53dff2f7c8 rink: 0.6.2 -> 0.6.3 2022-03-28 18:13:37 +00:00
Jan Tojnar
c8a5db3854 Merge branch 'staging-next' into staging 
; Conflicts:
;	pkgs/tools/archivers/rar/default.nix
 2022-03-28 17:56:38 +02:00
Jan Tojnar
997bb5e42c Merge branch 'master' into staging-next 
; Conflicts:
;	pkgs/development/python-modules/dnspython/default.nix
;	pkgs/development/python-modules/googleapis-common-protos/default.nix
 2022-03-28 17:55:31 +02:00
Sandro
a63a39e238
Merge pull request #165335 from willcohen/qwt-6.2 2022-03-28 14:19:09 +02:00
Sandro
2f1e03cb2b
Merge pull request #165691 from lucc/github-removed-unencrypted-git 2022-03-28 12:47:42 +02:00
Maximilian Bosch
f9dd150fbe
Merge pull request #165960 from Ma27/bump-stellarium 
stellarium: 0.21.3 -> 0.22.0
 2022-03-28 10:06:37 +02:00
7c6f434c
1dfd957336
Merge pull request #165570 from r-ryantm/auto-update/jmol 
jmol: 14.32.33 -> 14.32.39
 2022-03-28 07:52:03 +00:00
github-actions[bot]
36198fe197
Merge staging-next into staging 2022-03-27 18:01:40 +00:00
github-actions[bot]
e3d20dfaa5
Merge master into staging-next 2022-03-27 18:01:05 +00:00
Maximilian Bosch
c951914f43
stellarium: 0.21.3 -> 0.22.0 
ChangeLog: https://github.com/Stellarium/stellarium/releases/tag/v0.22.0
 2022-03-27 17:40:34 +02:00
Sandro
966dd84461
Merge pull request #165778 from Luz/ngspice 2022-03-27 16:13:39 +02:00
Martin Weinelt
d68657af92 Merge remote-tracking branch 'origin/master' into staging-next 2022-03-27 15:54:05 +02:00
Sandro
7d63d0891b
Merge pull request #156413 from numinit/klee-fixes 2022-03-27 13:36:16 +02:00
Sandro
08e8862bca
Merge pull request #159943 from evils/kicad-unstable 2022-03-27 11:58:39 +02:00
Sandro
2a581ac5e5
Merge pull request #164981 from evils/kicad-6.0.4 2022-03-27 11:58:31 +02:00
R. Ryantm
372b7d8db4 ginac: 1.8.2 -> 1.8.3 2022-03-26 19:25:45 +00:00
github-actions[bot]
77dc421883
Merge staging-next into staging 2022-03-26 18:01:56 +00:00
github-actions[bot]
3b6f03e497
Merge master into staging-next 2022-03-26 18:01:22 +00:00
Will Cohen
f405c59874 libsForQt5.qwt: 6.1.6 -> 6.2.0 2022-03-26 13:35:18 -04:00
Sandro
f338d0737c
Merge pull request #159997 from jvanbruegge/isabelle-linter 2022-03-26 15:58:08 +01:00