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8134 Commits

Author SHA1 Message Date
Weijia Wang
8e97536b8c
Merge pull request #246352 from wegank/nvc-bump 
nvc: 1.10.0 -> 1.10.1
 2023-07-31 19:51:20 +02:00
Weijia Wang
819bb53c2c nvc: 1.10.0 -> 1.10.1 2023-07-31 15:31:40 +02:00
Phillip Seeber
0261a4fc37 cp2k: 2023.1 -> 2023.2 2023-07-31 12:33:37 +02:00
Weijia Wang
2d69842838
Merge pull request #245931 from soupglasses/pkg/ns-usbloader-7.0 
ns-usbloader: init at 7.0
 2023-07-31 11:56:30 +02:00
Janik
41ebe3a503
Merge pull request #245958 from whonore/update-dafny-4.2.0 2023-07-29 21:05:23 +02:00
Martin Weinelt
86c62f4d00
Merge pull request #244655 from oddlama/init-insightface 
python310Packages.insightface: init at 0.7.3
 2023-07-29 20:49:19 +02:00
oddlama
3d0ab76d81
mxnet: fix darwin build 2023-07-29 13:28:30 +02:00
Pol Dellaiera
cb8e68fd59
Merge pull request #244146 from GiggleSquid/pkgs/boinc-headless 
boinc: add headless option
 2023-07-29 12:52:12 +02:00
whonore
eb15838bdb dafny: 4.0.0 -> 4.2.0 2023-07-28 17:11:46 -04:00
Sofi
00d7684ad8
maintainers: rename imsofi to soupglasses 2023-07-28 20:01:06 +02:00
Nick Cao
35abc09040
Merge pull request #245458 from vale981/patch-1 
mathematica: enable wayland support
 2023-07-27 20:41:19 -06:00
Doron Behar
eae54103ca lammps: always enable cuda opengl runpath support 2023-07-27 18:51:41 +03:00
Doron Behar
10e7c631c8 lammps: Install vim and neovim files 2023-07-27 18:44:01 +03:00
Doron Behar
6051ebe0ce lammps: Add meta.mainProgram 2023-07-27 18:44:01 +03:00
R. Ryantm
2dd3cda40f elan: 2.0.0 -> 2.0.1 2023-07-27 04:51:49 +00:00
Nick Cao
f00fb876ad
Merge pull request #245556 from figsoda/egglog 
egglog: unstable-2023-07-11 -> unstable-2023-07-19
 2023-07-26 17:50:11 -06:00
Sandro
d0202aa545
Merge pull request #244292 from Luflosi/update/yosys 
yosys: 0.30 -> 0.31
 2023-07-27 00:35:20 +02:00
figsoda
3db4ace604 egglog: unstable-2023-07-11 -> unstable-2023-07-19 
Diff: 14a6fc6060...9fe03ad35a
 2023-07-26 12:09:56 -04:00
Valentin Boettcher
ff73ec1d6d
mathematica: enable wayland support 2023-07-26 10:03:01 -04:00
Pol Dellaiera
6513fb9b37
Merge pull request #244818 from r-ryantm/auto-update/fricas 
fricas: 1.3.8 -> 1.3.9
 2023-07-26 13:26:10 +02:00
Pol Dellaiera
77df81300c
Merge pull request #245256 from r-ryantm/auto-update/labplot 
labplot: 2.10.0 -> 2.10.1
 2023-07-26 13:22:52 +02:00
Justin Bedő
ef4a59fac8
Merge pull request #245302 from r-ryantm/auto-update/last 
last: 1456 -> 1460
 2023-07-26 20:06:44 +10:00
Connor Baker
495875182e
Merge pull request #224068 from SomeoneSerge/respect-config-cudaSupport 
Respect global config.cudaSupport
 2023-07-25 14:18:14 -04:00
luisdomingoaranda
183e7ca1b7 kingstvis: init at 3.6.1 2023-07-25 13:04:12 +02:00
Dilip
401be824b2 pspp: 1.4.1 -> 1.6.2 
Note: needs ssw >= 0.7
 2023-07-25 11:08:27 +05:30
R. Ryantm
40b736f0e8 last: 1456 -> 1460 2023-07-25 04:34:13 +00:00
Nick Cao
c4a065f6c3
Merge pull request #244644 from amiloradovsky/master 
verilator & systemc: update & integration
 2023-07-24 17:01:34 -06:00
R. Ryantm
5577734d9e labplot: 2.10.0 -> 2.10.1 2023-07-24 22:40:48 +00:00
Sandro
a3da17da2f
Merge pull request #237952 from SharzyL/sv-lang 2023-07-24 17:40:15 +02:00
SharzyL
a6b6203b6d
sv-lang: init at 3.0 2023-07-24 12:26:35 +08:00
github-actions[bot]
449a683b10
Merge master into staging-next 2023-07-24 00:02:26 +00:00
Mario Rodas
6936629bae
Merge pull request #245026 from natsukium/dssp/update 
dssp: 4.3.1 -> 4.4.2
 2023-07-23 16:39:43 -05:00
github-actions[bot]
6afe543aec
Merge master into staging-next 2023-07-23 18:01:33 +00:00
Doron Behar
d4f5099ee4
Merge pull request #240730 from doronbehar/pkg/spdlog-fmt 
spdlog: reformat expression arguments, and comment about fmt_9
 2023-07-23 14:42:41 +00:00
natsukium
e54f06de69
dssp: 4.3.1 -> 4.4.2 
Diff: https://github.com/PDB-REDO/dssp/compare/refs/tags/v4.3.1...v4.4.2

Changelog: https://github.com/PDB-REDO/libcifpp/releases/tag/refs/tags/v4.4.2
 2023-07-23 21:24:23 +09:00
github-actions[bot]
86a73bdb86
Merge master into staging-next 2023-07-23 00:02:31 +00:00
R. Ryantm
edb213c399 gromacs: 2023.1 -> 2023.2 2023-07-22 15:07:37 +00:00
Tobias Mayer
ba2ce6e73b
various packages: pin boost179 
Taken from PR #244831 and vcunat amended the miopen override.
 2023-07-22 16:54:22 +02:00
R. Ryantm
e136d9b0c8 fricas: 1.3.8 -> 1.3.9 2023-07-22 11:43:20 +00:00
Felix Bühler
0a2745684e
Merge pull request #239624 from Stunkymonkey/use-optionalString-then 
treewide: use optionalString instead of 'then ""'
 2023-07-22 13:02:47 +02:00
Andrew Miloradovsky
a655cc3d9e verilator: use systemc and other fixes 2023-07-21 11:52:31 +00:00
Andrew Miloradovsky
d0ad644851 systemc: 2.3.3 -> 2.3.4 2023-07-21 11:52:22 +00:00
Someone Serge
471dbe9bcf
treewide: consume config.cudaSupport as required 
Eliminate uses of `config.cudaSupport or false` and alike, since the
option is now declared in config.nix with a default value

fd .nix -t f -x sed 's/config\.cudaSupport or false, cudaPackages [?] [{][}]/config.cudaSupport, cudaPackages ? { }/' '{}' -i
fd .nix -t f -x sed 's/config\.cudaSupport or false/config.cudaSupport/' '{}' -i
fd .nix -t f -x sed 's/cudaSupport = pkgs.config.cudaSupport/inherit (pkgs.config) cudaSupport/' '{}' -i
fd .nix -t f -x sed 's/cudaSupport = config.cudaSupport/inherit (config) cudaSupport/' '{}' -i
 2023-07-20 18:08:19 +03:00
Someone Serge
bf9e6fe9b8
tree-wide: rm cudaSupport ? false formal parameters 
'cudaSupport ? false' -> 'cudaSupport ? config.cudaSupport or false' to respect global defaults

Packages expressions that take `cudaSupport ? false` are likely to
ignore `config.cudaSupport`. Instead, we want them to make `cudaSupport`
a required argument, or to explicitly refer to `config`
 2023-07-20 17:27:07 +03:00
Someone Serge
74549ec63b
tree-wide: 'enableCuda ? false' -> 'config.cudaSupport or false' to respect global defaults 2023-07-20 17:27:07 +03:00
R. Ryantm
baf2e9b036 opensmt: 2.5.1 -> 2.5.2 2023-07-19 04:02:07 +00:00
Jack Connors
3f99b556de boinc: add headless option 
Added headless option and packages entry. Switches config flag --disable-manager and omits X/GUI related libs
 2023-07-18 21:47:12 +01:00
Luflosi
f6cd7355c5
abc-verifier: unstable-2023-02-23 -> unstable-2023-06-28 2023-07-18 21:37:31 +02:00
Mauricio Collares
03843721bf
Merge pull request #244031 from r-ryantm/auto-update/primecount 
primecount: 7.8 -> 7.9
 2023-07-18 14:37:26 +02:00
Weijia Wang
dd3e1f7f7a
Merge pull request #244050 from r-ryantm/auto-update/sumo 
sumo: 1.17.0 -> 1.18.0
 2023-07-18 11:07:09 +03:00
Weijia Wang
61f3c3e183
Merge pull request #244022 from r-ryantm/auto-update/qgroundcontrol 
qgroundcontrol: 4.2.6 -> 4.2.8
 2023-07-18 10:51:46 +03:00
R. Ryantm
85ea4214a3 sumo: 1.17.0 -> 1.18.0 2023-07-17 21:12:36 +00:00
R. Ryantm
48e895c202 primecount: 7.8 -> 7.9 2023-07-17 18:33:41 +00:00
R. Ryantm
99ce6d1bb5 qgroundcontrol: 4.2.6 -> 4.2.8 2023-07-17 18:17:29 +00:00
R. Ryantm
7a9d01d44c seqkit: 2.4.0 -> 2.5.0 2023-07-17 11:15:14 +00:00
Weijia Wang
a65eab9e69 nvc: 1.9.2 -> 1.10.0 2023-07-15 21:52:10 +02:00
github-actions[bot]
2a22bb7087
Merge master into staging-next 2023-07-15 06:01:19 +00:00
figsoda
f6793ae4af egglog: unstable-2023-06-26 -> unstable-2023-07-11 
Diff: 187441ad0d...14a6fc6060
 2023-07-14 11:37:35 -04:00
natsukium
d2c506948b
paml: refactor 2023-07-14 15:08:14 +09:00
natsukium
f6e2b68122
paml: 4.9j -> 4.10.7 
Diff: d59d538939...4.10.7
Changelog: https://github.com/abacus-gene/paml/releases/tag/4.10.7
 2023-07-14 15:08:08 +09:00
github-actions[bot]
9905fde3a5
Merge master into staging-next 2023-07-14 00:02:39 +00:00
Artturi
e74e68449c
Merge pull request #211075 from ppenguin/openmodelica-with-3d-animation 2023-07-14 00:00:04 +03:00
Weijia Wang
2dfef3b02a
Merge pull request #243295 from natsukium/delly/darwin 
delly: enable darwin support
 2023-07-13 21:01:55 +03:00
github-actions[bot]
a3b43106c9
Merge master into staging-next 2023-07-13 18:01:24 +00:00
Weijia Wang
0c87c8c09b
Merge pull request #243286 from wegank/tobim-boost-update-1 
boost17x, boost18x: remove aliases
 2023-07-13 20:48:31 +03:00
Mauricio Collares
943e19d2e0
Merge pull request #243039 from collares/pari-2.15.4 
pari: 2.15.3 -> 2.15.4
 2023-07-13 18:08:41 +01:00
natsukium
7cec88e50f
delly: enable openmp 2023-07-14 00:20:20 +09:00
natsukium
ae95c0d5a5
delly: refactor 2023-07-14 00:18:27 +09:00
natsukium
61be2ca18a
delly: enable darwin support 
- add passthru.tests
 2023-07-13 23:54:39 +09:00
Tobias Mayer
315d100113 boost17x, boost18x: remove aliases 2023-07-13 17:48:33 +03:00
Theodore Ni
b3fce87bc5
ergoscf: disable fortify3 hardening flag 2023-07-12 21:32:09 -07:00
Mauricio Collares
e2622eee41
Merge pull request #242466 from risicle/ris-fortify3-disable-various 
disable `fortify3` hardening flag on various packages
 2023-07-12 13:49:08 +01:00
Mauricio Collares
63fd36b9f1 pari: 2.15.3 -> 2.15.4 2023-07-12 08:53:37 +01:00
Weijia Wang
46ed1e3a8c
Merge pull request #242794 from r-ryantm/auto-update/elan 
elan: 1.4.6 -> 2.0.0
 2023-07-11 22:22:35 +03:00
Weijia Wang
e2078e747c
Merge pull request #242775 from r-ryantm/auto-update/cbmc 
cbmc: 5.86.0 -> 5.87.0
 2023-07-11 16:26:04 +03:00
R. Ryantm
fc8230b13a elan: 1.4.6 -> 2.0.0 2023-07-11 09:02:20 +00:00
natsukium
e7c8cbc2b1
cmtk: fix format 
- use finalAttrs instead of rec
- fix license
- remove trailing space from description
 2023-07-11 17:50:47 +09:00
natsukium
7014b723d9
cmtk: enable some compile options 
- use system zlib
- enabled bzip2
- enabled fftw
- enabled openmp for clang

- still disabled Grand Central Dispatch for linux because of build failure
- still disabled CUDA because of build failure
- still disabled mxml because of build failure
- still disabled lzma because of lack of lzmadec.h
- still disabled dcmtk because of build failure
 2023-07-11 17:50:47 +09:00
natsukium
6bf04fc9c9
cmtk: fix darwin build 2023-07-11 17:50:43 +09:00
R. Ryantm
68c5d276f1 cbmc: 5.86.0 -> 5.87.0 2023-07-11 05:28:30 +00:00
Nick Cao
40d3a7f94c
Merge pull request #241824 from evils/kicad 
kicad: 7.0.5 -> 7.0.6
 2023-07-11 13:03:42 +08:00
Janik
58da584acf
Merge pull request #185499 from mgregson/tlaplus-1.8.0 2023-07-10 10:30:58 +02:00
Weijia Wang
9c73d9e61e
Merge pull request #242508 from r-ryantm/auto-update/kallisto 
kallisto: 0.48.0 -> 0.50.0
 2023-07-09 22:56:52 +03:00
R. Ryantm
b5e04f0bc7 kallisto: 0.48.0 -> 0.50.0 2023-07-09 17:19:43 +00:00
Weijia Wang
763c174440
Merge pull request #236975 from r-ryantm/auto-update/singular 
singular: 4.3.2p1 -> 4.3.2p2
 2023-07-09 18:14:53 +03:00
Mauricio Collares
8f216662cb sage: import singular 4.3.2p2 update patch 2023-07-09 12:59:45 +01:00
R. Ryantm
69cc6c07ac singular: 4.3.2p1 -> 4.3.2p2 2023-07-09 12:57:07 +01:00
Mauricio Collares
1104a22962 sage: refresh patches 2023-07-09 12:53:52 +01:00
Robert Scott
3feefc9d32 root5: disable fortify3 hardening flags 2023-07-09 12:45:43 +01:00
Mauricio Collares
189a069329
Merge pull request #242419 from r-ryantm/auto-update/polymake 
polymake: 4.9 -> 4.10
 2023-07-09 11:54:17 +01:00
Weijia Wang
6d506a9d51
Merge pull request #242302 from r-ryantm/auto-update/nest-mpi 
nest-mpi: 3.4 -> 3.5
 2023-07-09 12:21:22 +03:00
R. Ryantm
ca9e7a2416 polymake: 4.9 -> 4.10 2023-07-09 06:18:12 +00:00
R. Ryantm
ead7b7800d nest-mpi: 3.4 -> 3.5 2023-07-08 16:03:30 +00:00
R. Ryantm
47d5bee543 veryfasttree: 4.0 -> 4.0.1 2023-07-08 07:27:05 +00:00
Ilan Joselevich
412e47d656
Merge pull request #241919 from dev-null-undefined/master 
mathematica: 13.2.1 -> 13.3.0
 2023-07-08 00:44:26 +03:00
Markus Kowalewski markus.kowalewski@fysik.su.se
3cbc4483f3 octopus: 12.2 -> 13.0 2023-07-06 15:25:28 +02:00
dev-null-undefined
76177da5c0
mathematica: 13.2.1 -> 13.3.0 2023-07-06 14:20:10 +02:00
Evils
2f4d7504f5 kicad: 7.0.5 -> 7.0.6 2023-07-06 07:18:29 +02:00
figsoda
8e1aab5d34 egglog: unstable-2023-06-11 -> unstable-2023-06-26 
Diff: c7ef8b000c...187441ad0d
 2023-07-04 11:57:03 -04:00
R. Ryantm
fac18fdb2c autodock-vina: 1.2.3 -> 1.2.5 2023-07-04 13:13:22 +00:00
Doron Behar
2bc847c8f4
Merge pull request #241325 from alyaeanyx/qalculate-4.7.0 
{libqalculate, qalculate-gtk, qalculate-qt}: 4.6.1 -> 4.7.0
 2023-07-04 11:19:48 +00:00
Nick Cao
b44297facb
Merge pull request #241272 from kilianar/stellarium-23.2 
stellarium: 23.1 -> 23.2
 2023-07-04 10:34:33 +08:00
alyaeanyx
2ae8e33832 {libqalculate, qalculate-gtk, qalculate-qt}: 4.6.1 -> 4.7.0 2023-07-03 20:07:10 +02:00
Weijia Wang
1e0d363214
Merge pull request #241136 from r-ryantm/auto-update/veryfasttree 
veryfasttree: 3.1.1 -> 4.0
 2023-07-03 17:17:51 +03:00
kilianar
24016b9633 stellarium: 23.1 -> 23.2 
https://github.com/Stellarium/stellarium/releases/tag/v23.2
 2023-07-03 14:04:41 +02:00
Weijia Wang
82d4f6b43d veryfasttree: fix build on darwin 2023-07-03 12:29:44 +03:00
Weijia Wang
d2eeccba40
Merge pull request #241086 from r-ryantm/auto-update/simgrid 
simgrid: 3.32 -> 3.34
 2023-07-03 10:38:49 +03:00
Nick Cao
8feaa9fe93
Merge pull request #241120 from jiegec/cbmc 
cbmc: 5.76.1 -> 5.86.0
 2023-07-03 13:58:03 +08:00
figsoda
5522188fc8
Merge pull request #241192 from tjni/snakemake 
snakemake: fix broken source hash
 2023-07-02 21:02:26 -04:00
Theodore Ni
1af33d4653
snakemake: fix broken source hash 2023-07-02 16:50:09 -07:00
Nick Cao
ab163c16ee
Merge pull request #241037 from NickCao/gprojector 
gprojector: 3.0.6 -> 3.1.0
 2023-07-03 06:20:55 +08:00
Martin Weinelt
5a193fb4dd
Merge pull request #232469 from natsukium/autodock-vina/init 
autodock-vina: init at 1.2.3
 2023-07-02 23:45:13 +02:00
Martin Weinelt
bb40b8c205
Merge pull request #235322 from natsukium/dssp/update 
dssp: 4.2.2.1 -> 4.3.1; libcifpp: 5.0.8 -> 5.1.0.1; libmcfp: 1.2.3 -> 1.2.4
 2023-07-02 23:12:49 +02:00
figsoda
50acc2d57a pkgs/applications: replace "${version}" with version 2023-07-02 14:39:50 -04:00
R. Ryantm
cb16c50571 veryfasttree: 3.1.1 -> 4.0 2023-07-02 15:55:36 +00:00
Jiajie Chen
2db283819e cbmc: 5.76.1 -> 5.86.0 2023-07-02 22:46:06 +08:00
R. Ryantm
1539e263f8 simgrid: 3.32 -> 3.34 2023-07-02 11:06:07 +00:00
Nick Cao
1693695975
gprojector: 3.0.6 -> 3.1.0 2023-07-02 13:06:15 +08:00
Doron Behar
48c25dcaf2 spdlog: reformat expression arguments, and comment about fmt_9 2023-07-01 16:59:49 +03:00
natsukium
7b49fced0f
dssp: fix format 
- add changelog to meta
- use finalAttrs
 2023-07-01 16:40:29 +09:00
natsukium
fba5a4d702
dssp: 4.2.2.1 -> 4.3.1 
Diff: https://github.com/PDB-REDO/dssp/compare/v4.2.2.1...v4.3.1
 2023-07-01 16:36:36 +09:00
Michael Gregson
9269d5823d tlaplus18: init at 1.8.0 
This is a pre-release of version 1.8 of TLA+. It adds, among other
things, a TLA+ REPL.

Release Notes: https://github.com/tlaplus/tlaplus/releases/tag/v1.8.0
 2023-06-30 16:09:41 -07:00
Théo Zimmermann
29cf8484ab
Merge pull request #240656 from vbgl/coq-8.17.1 
coq: 8.17.0 → 8.17.1
 2023-06-30 14:26:08 +02:00
Weijia Wang
3b743dd6b6
Merge pull request #240479 from r-ryantm/auto-update/gerbv 
gerbv: 2.9.7 -> 2.9.8
 2023-06-30 10:29:54 +03:00
Vincent Laporte
002ffb885a
coq: 8.17.0 → 8.17.1 2023-06-30 06:48:15 +02:00
R. Ryantm
c7231acb83 gerbv: 2.9.7 -> 2.9.8 2023-06-29 06:41:33 +00:00
Justin Bedő
296758401d
Merge pull request #239891 from NixOS/r-updates 
R updates
 2023-06-29 13:14:20 +10:00
Justin Bedő
2687680f22
Merge pull request #240318 from r-ryantm/auto-update/mosdepth 
mosdepth: 0.3.3 -> 0.3.4
 2023-06-29 09:52:34 +10:00
nviets
4bb4d449a7
snakemake: 7.25.3 -> 7.29.0 (#240263) 
Co-authored-by: nviets <nathan.viets@gmail.com>
 2023-06-28 17:09:10 +02:00
OTABI Tomoya
125bb92705
streamlit: 1.21.0 -> 1.24.0 (#240248) 
Diff: https://github.com/streamlit/streamlit/compare/1.21.0...1.24.0

Changelog: https://github.com/streamlit/streamlit/releases/tag/1.24.0
 2023-06-28 17:08:47 +02:00
Mario Rodas
e6a970aaba
Merge pull request #238994 from kilianar/geogebra 
geogebra: 5-0-745-0 -> 5-0-783-0, geogebra6: 6-0-745-0 -> 6-0-783-0
 2023-06-28 06:55:22 -05:00
R. Ryantm
abfcd95c63 mosdepth: 0.3.3 -> 0.3.4 2023-06-28 10:52:42 +00:00
R. Ryantm
75b8e7eb4b cryptominisat: 5.11.4 -> 5.11.11 2023-06-28 02:05:20 +00:00
kilianar
46f3360e1a geogebra6: 6-0-745-0 -> 6-0-785-0 2023-06-28 00:08:19 +02:00
kilianar
48a30529f7 geogebra: 5-0-745-0 -> 5-0-785-0 2023-06-28 00:08:19 +02:00
Sandro
6c112fb5de
Merge pull request #232600 from evils/kicad-unstable 2023-06-27 13:33:54 +02:00
Janik
77e5ce731b
Merge pull request #238964 from McSinyx/klee-3 2023-06-27 09:38:09 +02:00
Evils
ad19566aca kicad-unstable: 2023-04-14 -> 2023-06-24 
new qa_cli test needs pytest-image-diff
it also accesses $HOME, so setting that as well
and it checks for a valid commit
 which is exposed to the end-user via kicad-cli version --format=commit
 so i'm setting the placeholder to the actual commit used
  mostly to avoid doing a leaveDotGit and rewriting update.sh
 2023-06-27 08:27:47 +02:00
github-actions[bot]
4e9dcbbbc6
Merge master into staging-next 2023-06-26 18:01:29 +00:00
Janik
a2f36b2963
Merge pull request #231149 from mgregson/tlaplus-remove-unnecessary-jdk-dependency 2023-06-26 18:15:28 +02:00
github-actions[bot]
f04cfae48a
Merge master into staging-next 2023-06-26 12:01:27 +00:00
Mario Rodas
e0e4c97cd1
Merge pull request #239623 from marsam/update-z3 
z3: 4.11.0 -> 4.11.2, 4.12.1 -> 4.12.2
 2023-06-26 05:16:37 -05:00
Vladimír Čunát
24711148d4
openmvg: fixup build 
The build broke probably after cmake upgrade in b8ac5b6cfb,
but either way - this forcing of old C++ standard seemed bad.
https://hydra.nixos.org/build/225241222/nixlog/2/tail
 2023-06-26 11:28:12 +02:00
Justin Bedo
bd8f4a24e1
R: 4.3.0 -> 4.3.1 2023-06-26 16:47:23 +10:00
Weijia Wang
826bdb7214
Merge pull request #239691 from r-ryantm/auto-update/diamond 
diamond: 2.1.7 -> 2.1.8
 2023-06-26 07:46:03 +02:00
Weijia Wang
ca4181830d
Merge pull request #239646 from r-ryantm/auto-update/horizon-eda 
horizon-eda: 2.4.0 -> 2.5.0
 2023-06-26 07:41:37 +02:00
Weijia Wang
2b6acb1ae6
Merge pull request #239479 from r-ryantm/auto-update/qucs-s 
qucs-s: 1.0.2 -> 1.1.0
 2023-06-26 07:25:09 +02:00
Mario Rodas
27343d6e6b
Merge pull request #239795 from r-ryantm/auto-update/elan 
elan: 1.4.5 -> 1.4.6
 2023-06-25 14:10:25 -05:00
R. Ryantm
aa93209605 elan: 1.4.5 -> 1.4.6 2023-06-25 17:27:10 +00:00
R. Ryantm
fa6b5a3cb3 last: 1453 -> 1456 2023-06-25 11:01:07 -03:00
R. Ryantm
754d578555 diamond: 2.1.7 -> 2.1.8 2023-06-25 04:35:30 +00:00
R. Ryantm
0c7cacbac4 horizon-eda: 2.4.0 -> 2.5.0 2023-06-24 21:56:23 +00:00
Felix Buehler
f3719756b5 treewide: use optionalString instead of 'then ""' 2023-06-24 20:19:19 +02:00
Mario Rodas
b2aee9c18e
Merge pull request #230298 from jleightcap/jl/z3-4.12 
z3: 4.12.1
 2023-06-24 10:53:02 -05:00
Mario Rodas
cce7280539 z3_4_12: 4.12.1 -> 4.12.2 
https://github.com/Z3Prover/z3/releases/tag/z3-4.12.2
 2023-06-24 04:20:00 +00:00
Mario Rodas
f87301f5f1 z3_4_11: 4.11.0 -> 4.11.2 
https://github.com/Z3Prover/z3/releases/tag/z3-4.11.2
 2023-06-24 04:20:00 +00:00
Mario Rodas
2c0a8e5050 z3: add changelog to meta 2023-06-24 04:20:00 +00:00
R. Ryantm
296b322b40 qucs-s: 1.0.2 -> 1.1.0 2023-06-23 22:41:56 +00:00
Nick Cao
7d73228de8
eigenmath: unstable-2023-05-12 -> unstable-2023-06-16 
Diff: a6de473ad8...800adc5c0b
 2023-06-22 16:40:56 +08:00
Doron Behar
636000a5bb
Merge pull request #238771 from doronbehar/pkg/lammps-extras 
lammps-mpi: Use a generic extraBuildInputs instead of withMpi
 2023-06-22 06:50:03 +00:00
Doron Behar
4a64b8d9f3 lammps-mpi: Use a generic extraBuildInputs instead of withMpi 
Add support for `extraCmakeFlags` as well and add `pkg-config` to
`nativeBuildInputs`.
 2023-06-21 23:03:57 +03:00
Nguyễn Gia Phong
558af1d8a5
klee: 2.3 -> 3.0 2023-06-21 18:16:44 +09:00
R. Ryantm
6884e85326 verilator: 5.010 -> 5.012 2023-06-21 03:43:32 +00:00
Weijia Wang
dca415554f treewide: replace mavenfod with buildMavenPackage 2023-06-20 19:59:30 +03:00
Weijia Wang
40001fa439 treewide: remove mavenfod overrides 2023-06-20 19:54:51 +03:00
Weijia Wang
9ce0974026 gephi: convert to mavenfod 2023-06-20 15:04:49 +03:00
Tillerino
13dd515a92 maven: adjust hashes of pull-maven-dependencies derivations 
Since the newer Maven pulls different versions of its own dependencies,
the hashes of these derivations all changed.
 2023-06-20 13:15:27 +02:00
Weijia Wang
bac33585a7
Merge pull request #238709 from wegank/digital-mavenfod 
digital: convert to mavenfod
 2023-06-20 11:59:15 +03:00
Weijia Wang
06f73278ea digital: convert to mavenfod 2023-06-20 09:53:15 +03:00
Philipp Middendorf
8cff0900bc
crystfel: fix x86_64 hash (#238606) 2023-06-20 08:32:03 +02:00
Markus Kowalewski
a9d8ac0b1e
openmolcas: fix hash 2023-06-19 15:11:32 +02:00
Weijia Wang
799c5a8032
Merge pull request #238330 from figsoda/egglog 
egglog: unstable-2023-05-22 -> unstable-2023-06-11
 2023-06-18 02:07:56 +03:00
Weijia Wang
0de9ad3cc4
Merge pull request #238321 from markuskowa/upd-openmolcas 
openmolcas: 23.02 -> 23.06
 2023-06-18 02:03:59 +03:00
figsoda
70f33f2777 egglog: unstable-2023-05-22 -> unstable-2023-06-11 
Diff: 5242b50051...c7ef8b000c
 2023-06-17 17:33:00 -04:00
Markus Kowalewski
cb5504b21c
openmolcas: 23.02 -> 23.06 2023-06-17 22:38:08 +02:00
Mario Rodas
2bd4a56ee1
Merge pull request #237950 from bcdarwin/bppsuite-fix-homepage 
bppsuite: fix homepage
 2023-06-16 18:28:27 -05:00
figsoda
eaebbdf59a
Merge pull request #238092 from NickCao/calcmysky 
calcmysky: 0.3.0 -> 0.3.1
 2023-06-16 12:28:14 -04:00
Weijia Wang
e44c81a3b8
Merge pull request #229525 from lopsided98/mavproxy-update 
mavproxy, python3Packages.pymavlink: update
 2023-06-16 16:12:53 +03:00
Nick Cao
f9eed769ca
calcmysky: add stellarium to tests 2023-06-16 21:12:50 +08:00
Nick Cao
c196ad4df9
calcmysky: 0.3.0 -> 0.3.1 
Diff: https://github.com/10110111/CalcMySky/compare/refs/tags/v0.3.0...v0.3.1
 2023-06-16 21:11:04 +08:00
Pol Dellaiera
610f62011e
Merge pull request #237742 from natsukium/kalign/init 
kalign: init at 3.3.5
 2023-06-16 08:20:55 +02:00
Ben Wolsieffer
99002aba8e mavproxy: 1.8.60 -> 1.8.62 2023-06-15 17:36:54 -04:00
Ben Darwin
9120f78e06 bppsuite: fix homepage 
Old homepage is down, so point to GitHub instead.
 2023-06-15 12:18:11 -04:00
Weijia Wang
169cb59498 calc: replace util-linux with unixtools.col 2023-06-15 14:25:40 +03:00
Théo Zimmermann
2bdeec6f84 coq: use dune_3 
This is needed to build Coq dev and is compatible with all current releases of Coq that require Dune.
 2023-06-14 14:33:36 +02:00
natsukium
7b36afffd6
kalign: init at 3.3.5 2023-06-14 21:05:58 +09:00
Weijia Wang
3f3ca021b7
Merge pull request #237633 from wegank/gplates-python39 
gplates: drop python39
 2023-06-14 00:59:31 +03:00
natsukium
3d1b9f0819 macs2: rename from MACS2 2023-06-13 21:47:47 +00:00
natsukium
12cab182ae MACS2: 2.2.7.1 -> 2.2.8 
Diff: https://github.com/macs3-project/MACS/compare/v2.2.7.1...v2.2.8
changelog: https://github.com/macs3-project/MACS/releases/tag/v2.2.8
 2023-06-13 21:47:47 +00:00
Weijia Wang
28af3205bc gplates: drop python39 2023-06-14 00:18:09 +03:00
Nick Cao
80dcc617f1
Merge pull request #236565 from natsukium/aragorn/update 
aragorn: 1.2.38 -> 1.2.41
 2023-06-13 03:51:58 -06:00
toastal
8201afb77f ocamlPackages.mtime: create 1.x fork for compat 
Slapped mtime_1 affected ocamlPackages
 2023-06-13 13:14:38 +07:00
R. Ryantm
bc62c28b22 jmol: 16.1.9 -> 16.1.13 2023-06-09 20:47:32 +00:00
Pol Dellaiera
f03155fc9f
Merge pull request #218669 from avdv/gephi-0.10.1 
gephi: 0.9.6 -> 0.10.1
 2023-06-08 14:15:44 +02:00
natsukium
597e4e8652
aragorn: fix format 
- use finalAttrs instead of rec
- add runHook
 2023-06-08 18:42:29 +09:00
natsukium
bb317093e8
aragorn: 1.2.38 -> 1.2.41 
- change the source and homepage
- change the license
 2023-06-08 18:42:24 +09:00
Doron Behar
5e87e91405
Merge pull request #235853 from doronbehar/pkg/lammps 
lammps: stable_29Oct2020 -> 23Jun2022_update4
 2023-06-08 11:33:38 +03:00
natsukium
f2d7b3381b
cmtk: 3.3.1 -> 3.3.2 2023-06-08 15:34:29 +09:00
Claudio Bley
2c9092a377 gephi: 0.9.6 -> 0.10.1 
* gephi requires Java 11 to run according to https://gephi.org/users/requirements/
 2023-06-07 22:43:49 +02:00
Doron Behar
9c99223666 lammps: Add backwards compatible link to lmp_serial 2023-06-07 18:09:36 +03:00
Doron Behar
64bed841a9 lammps: mark as broken for 32 bit lapack & blas 2023-06-07 18:09:36 +03:00
R. Ryantm
ca10cb55d9 dataexplorer: 3.7.7 -> 3.7.8 2023-06-06 05:47:41 +00:00
figsoda
40fbe215ac
Merge pull request #235807 from figsoda/egglog 2023-06-05 12:27:03 -04:00
Weijia Wang
bff97d5215
Merge pull request #235727 from r-ryantm/auto-update/diamond 
diamond: 2.1.6 -> 2.1.7
 2023-06-04 19:10:45 +02:00
Justin Bedő
4ae814f720
Merge pull request #234958 from NixOS/r-updates 
R,rPackages: R 4.2.3 -> 4.3.0
 2023-06-04 21:23:50 +10:00
R. Ryantm
1f231abe57 fastp: 0.23.3 -> 0.23.4 2023-06-04 03:21:21 +00:00
Doron Behar
66c6053b10 lammps: 29Oct2020 -> 23Jun2022_update4 2023-06-04 01:29:54 +03:00
figsoda
1f3b4712f5 egglog: init at unstable-2023-05-22 
https://github.com/egraphs-good/egglog
 2023-06-03 14:11:55 -04:00
Doron Behar
4994570ab3 lammps: Add doronbehar as maintainer 2023-06-03 15:40:20 +03:00
Doron Behar
f204873aa8
Merge pull request #213235 from Stunkymonkey/mathematica-deprecate-phases 
mathematica{9,10,11}: deprecate phases
 2023-06-03 11:47:36 +03:00
R. Ryantm
33d8777af9 diamond: 2.1.6 -> 2.1.7 2023-06-03 08:46:43 +00:00
R. Ryantm
a9be9ddb0e calc: 2.14.1.5 -> 2.14.1.6 2023-06-02 23:42:17 +00:00
Felix Buehler
04512a32bf mathematica{9,10,11}: deprecate phases 2023-06-02 18:10:52 +02:00
Luflosi
30446d830a
boinc: 7.22.1 -> 7.22.2 
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.22%2F7.22.2
 2023-06-01 22:37:28 +02:00
R. Ryantm
7c4e31bb4c igv: 2.16.0 -> 2.16.1 2023-05-31 13:33:15 +00:00
Fabian Affolter
1921b5e06d
Merge pull request #235127 from r-ryantm/auto-update/gerbv 
gerbv: 2.9.6 -> 2.9.7
 2023-05-31 12:32:39 +02:00
Fabian Affolter
083530b578
gerbv: equalize 2023-05-31 09:02:13 +02:00
Fabian Affolter
dd0a325d94
gerbv: specify license 2023-05-31 08:59:23 +02:00
R. Ryantm
da2658d2c9 gerbv: 2.9.6 -> 2.9.7 2023-05-31 04:45:46 +00:00
Vincent Laporte
3b666b41c3 alt-ergo: 2.4.2 → 2.4.3 2023-05-31 06:06:49 +02:00
Justin Bedo
b8a6381d6a
R: 4.2.3 -> 4.3.0 2023-05-30 16:23:47 +10:00
R. Ryantm
71a23afb45 iqtree: 2.2.2.4 -> 2.2.2.6 2023-05-30 01:13:17 +00:00
Weijia Wang
6b0f1241eb
Merge pull request #234658 from evils/kicad 
kicad: 7.0.4 -> 7.0.5
 2023-05-29 00:03:09 +03:00
Sandro
5cef1d6b2e
Merge pull request #231661 from fedeinthemix/wip-wolfram-engine 2023-05-28 20:02:32 +02:00
Evils
0ba170d016 kicad: 7.0.4 -> 7.0.5 
7.0.4 not officially released :(
https://www.kicad.org/blog/2023/05/KiCad-7.0.5-Release/
 2023-05-28 19:21:29 +02:00
figsoda
4e1b566701
Merge pull request #234572 from r-ryantm/auto-update/seqtk 
seqtk: 1.3 -> 1.4
 2023-05-28 10:03:37 -04:00
Andres Navarro
68e77505ae openbugs: init at 3.2.3 2023-05-28 12:58:37 +00:00
natsukium
d515191577
autodock-vina: init at 1.2.3 2023-05-28 16:17:36 +09:00
R. Ryantm
bebbc418d4 seqtk: 1.3 -> 1.4 2023-05-28 06:48:51 +00:00
Robert Scott
2c9bea0eaa sharpsat-td: patch with updated version of mpreal/mpfrc++ 
this version is needed for mpfr 4.2.0+ support

lesson - don't merge old PRs without re-testing them yourself
 2023-05-27 20:49:34 +01:00
Robert Scott
cfbb8e82c6
Merge pull request #178159 from risicle/ris-sharpsat-td 
sharpsat-td: init at unstable-2021-09-05
 2023-05-27 15:47:31 +01:00
Weijia Wang
5b61dd80b9
Merge pull request #234313 from r-ryantm/auto-update/opensmt 
opensmt: 2.5.0 -> 2.5.1
 2023-05-27 02:34:54 +03:00
R. Ryantm
b954ef286d opensmt: 2.5.0 -> 2.5.1 2023-05-26 22:27:08 +00:00
Silvan Mosberger
5c042401b4 flatcam: fix build 2023-05-26 21:05:49 +02:00
Samuel Ainsworth
bbdb8416a0
Merge pull request #233851 from ConnorBaker/feat/cudnn_8_9_1 
cudaPackages.cudnn: version bumps; remove patch from name
 2023-05-26 10:26:30 -07:00
Weijia Wang
8d1f69a0fc
Merge pull request #234100 from r-ryantm/auto-update/blast 
blast: 2.13.0 -> 2.14.0
 2023-05-26 11:23:55 +03:00
Weijia Wang
af29900c15
Merge pull request #228313 from LeSuisse/gerbv-2.9.6 
pcb2gcode: 2.4.0 -> 2.5.0, gerbv: 2.7.0 -> 2.9.6, switch to the maintained fork
 2023-05-26 09:28:40 +03:00
R. Ryantm
216e1726da blast: 2.13.0 -> 2.14.0 2023-05-26 00:23:49 +00:00
figsoda
8014b08ee0 treewide/applications: use top-level fetchPypi 2023-05-25 10:51:30 -04:00
Weijia Wang
25906f0ea1
Merge pull request #233893 from evils/kicad 
kicad: 7.0.2 -> 7.0.4
 2023-05-25 15:35:50 +03:00
Weijia Wang
8a7c32b8cb ngspice: 37 -> 40 2023-05-25 11:16:36 +03:00
Evils
1687e83a47 kicad: 7.0.2 -> 7.0.4 2023-05-25 00:06:01 +02:00
Connor Baker
222d966273 cudaPackages.cudnn: remove patch version from name to conform with cudaPackages standard 2023-05-24 12:56:22 -04:00
Weijia Wang
915219ace4
Merge pull request #192219 from r-ryantm/auto-update/marvin 
marvin: 22.13.0 -> 23.4.0
 2023-05-24 02:11:57 +03:00
OTABI Tomoya
bb820fbaf6
apbs: init at 3.4.1 (#230644) 
* apbs: init at 3.4.1

* Update pkgs/applications/science/chemistry/apbs/default.nix

---------

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2023-05-23 01:10:16 +02:00
Weijia Wang
87ab85b584
Merge pull request #233445 from kilianar/lean-3.51.0 
lean: 3.50.3 -> 3.51.0
 2023-05-23 01:27:11 +03:00
Weijia Wang
9845f9dade
Merge pull request #229602 from r-ryantm/auto-update/clp 
clp: 1.17.7 -> 1.17.8
 2023-05-23 01:16:56 +03:00
Mauricio Collares
f5373a830b
Merge pull request #233453 from collares/sage-platforms 
sage: add meta.platforms
 2023-05-22 20:58:34 +02:00
pennae
229321224a
Merge pull request #233441 from evils/kicad 
kicad: make KICAD7_TEMPLATE_DIR a single path
 2023-05-22 19:25:12 +02:00
Mauricio Collares
c88e999122 sage: add meta.platforms 2023-05-22 18:30:39 +02:00