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delly: enable darwin support

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- add passthru.tests
This commit is contained in:
natsukium 2023-07-13 23:52:29 +09:00
parent 4959cd51c6
commit 61be2ca18a
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1 changed files with 11 additions and 2 deletions
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13
pkgs/applications/science/biology/delly/default.nix
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@ -1,4 +1,4 @@
{ lib, stdenv, fetchFromGitHub, htslib, zlib, bzip2, xz, ncurses, boost }:
{ lib, stdenv, fetchFromGitHub, htslib, zlib, bzip2, xz, ncurses, boost, runCommand, delly }:
stdenv.mkDerivation rec {
pname = "delly";
@ -23,11 +23,20 @@ stdenv.mkDerivation rec {
runHook postInstall
'';
passthru.tests = {
simple = runCommand "${pname}-test" { } ''
mkdir $out
${lib.getExe delly} call -g ${delly.src}/example/ref.fa ${delly.src}/example/sr.bam > $out/sr.vcf
${lib.getExe delly} lr -g ${delly.src}/example/ref.fa ${delly.src}/example/lr.bam > $out/lr.vcf
${lib.getExe delly} cnv -g ${delly.src}/example/ref.fa -m ${delly.src}/example/map.fa.gz ${delly.src}/example/sr.bam > cnv.vcf
'';
};
meta = with lib; {
description = "Structural variant caller for mapped DNA sequenced data";
license = licenses.bsd3;
maintainers = with maintainers; [ scalavision ];
platforms = platforms.linux;
platforms = platforms.unix;
longDescription = ''
Delly is an integrated structural variant (SV) prediction method
that can discover, genotype and visualize deletions, tandem duplications,