R. Ryantm
0b9427cf71
snakemake: 8.3.2 -> 8.4.4
2024-02-06 18:59:24 -05:00
Raphael Das Gupta
13f6915775
openrefine: set meta.mainProgram
2024-02-06 13:49:34 +01:00
Weijia Wang
ab45f7963c
Merge pull request #282757 from r-ryantm/auto-update/bada-bib
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bada-bib: 0.8.0 -> 0.8.1
2024-02-04 23:44:55 +01:00
arthsmn
4ee1815267
gplates: 2.3.0 -> 2.4
2024-02-04 14:19:31 +01:00
Robert Scott
e5e19d75c0
Merge pull request #265959 from risicle/ris-openrefine
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openrefine: init at 3.7.7
2024-02-03 14:28:55 +00:00
Robert Scott
272f7bb1f4
openrefine: init at 3.7.7
2024-02-03 13:37:59 +00:00
h7x4
51c3e2b494
Merge pull request #285171 from r-ryantm/auto-update/boinc
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boinc: 7.24.2 -> 7.24.3
2024-02-01 20:17:27 +01:00
Weijia Wang
a07361dd1c
Merge pull request #285382 from wegank/gplates-fix
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gplates: fix runtime error
2024-02-01 19:42:53 +01:00
Weijia Wang
fa0efec1d5
gplates: fix runtime error
2024-01-31 23:16:41 +01:00
Dmitry Kalinkin
f125235a38
root: 6.30.02 -> 6.30.04 ( #285339 )
2024-01-31 15:25:14 -05:00
R. Ryantm
6fed14e6ac
boinc: 7.24.2 -> 7.24.3
2024-01-31 03:49:58 +00:00
Jonas Chevalier
b1e30d76d4
fahclient: 8.1.18 -> 8.3.1 ( #281830 )
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* fahclient: 8.1.18 -> 8.3.1
* Update pkgs/applications/science/misc/foldingathome/client.nix
Co-authored-by: Robert Schütz <github@dotlambda.de>
* Update pkgs/applications/science/misc/foldingathome/client.nix
Co-authored-by: Robert Schütz <github@dotlambda.de>
---------
Co-authored-by: Robert Schütz <github@dotlambda.de>
2024-01-29 18:17:16 +01:00
R. RyanTM
ec66ff787e
snakemake: 8.2.1 -> 8.3.2 ( #284218 )
2024-01-27 09:26:23 -05:00
R. Ryantm
4765bc88c6
bada-bib: 0.8.0 -> 0.8.1
2024-01-22 02:16:27 +00:00
Fabian Affolter
48433b4d36
cwltool: 3.1.20230213100550 -> 3.1.20240112164112
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Diff: https://github.com/common-workflow-language/cwltool/compare/refs/tags/3.1.20230213100550...3.1.20240112164112
Changelog: https://github.com/common-workflow-language/cwltool/releases/tag/3.1.20240112164112
2024-01-21 10:32:48 +01:00
Dmitry Kalinkin
346cb05310
snakemake: 8.0.1 -> 8.2.1
2024-01-17 16:28:55 -05:00
Robert Scott
12a82c9c78
Merge pull request #279386 from r-ryantm/auto-update/rink
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rink: 0.6.3 -> 0.7.0
2024-01-12 22:08:27 +00:00
Dmitry Kalinkin
be5b82b259
Merge pull request #275882 from veprbl/pr/snakemake_8_0_1
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snakemake: 7.32.4 -> 8.0.1
2024-01-07 11:03:10 -05:00
R. Ryantm
a373789932
rink: 0.6.3 -> 0.7.0
2024-01-07 14:39:33 +00:00
Weijia Wang
553ccf3dfe
tulip: fix build on darwin
2024-01-03 22:16:58 +01:00
R. Ryantm
c777f0bfa7
tulip: 5.7.2 -> 5.7.3
2023-12-28 07:46:06 +00:00
Dmitry Kalinkin
7ff81781f2
snakemake: 7.32.4 -> 8.0.1
2023-12-21 14:32:05 -05:00
Dmitry Kalinkin
d245890087
root: 6.28.10 -> 6.30.02 ( #274348 )
2023-12-17 05:20:40 -05:00
Dmitry Kalinkin
d4af6e420f
root: build with root7 and webgui ( #272723 )
2023-12-15 08:43:44 -05:00
Dmitry Kalinkin
1a5412e140
toil: 5.7.1 -> 5.12.0 ( #273274 )
2023-12-12 16:04:33 -05:00
Dmitry Kalinkin
190cb5fc41
root: 6.28.08 -> 6.28.10
2023-12-07 12:36:03 -05:00
Jonas Chevalier
80d540bd31
fahclient: wrap in FHS ( #271994 )
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Folding@home downloads arbitrary binaries that it runs and that have the
wrong loader.
Fixes https://github.com/NixOS/nixpkgs/pull/246832#issuecomment-1837625014
2023-12-05 10:04:09 +01:00
sternenseemann
8c59811e4e
root5: broken with clang
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Seems like any clang version > 5 doesn't work. Since root >= 6.0 is
available from nixpkgs, I think it is reasonable to mark it as broken
for now. Maybe someone can figure out if it is possible to backport a
fix from root >= 6.0.
2023-12-04 19:43:08 +01:00
R. Ryantm
fc9bec86de
simgrid: 3.34 -> 3.35
2023-11-28 16:59:53 +00:00
Jonas Chevalier
a403a118d1
fahclient: 7.6.21 -> 8.1.18 ( #246832 )
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Rebuild from source
2023-11-27 14:20:58 +01:00
Pierre Bourdon
f4db50bafb
Merge pull request #269700 from NixOS/pr/root_warning_fix
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root: fix excessive build log size
2023-11-25 10:38:13 +01:00
Dmitry Kalinkin
8ae6154b2b
root: fix excessive build log size
2023-11-24 14:33:55 -05:00
Renato Garcia
3c87cb32f0
snakemake: 7.29.0 -> 7.32.4 ( #266543 )
2023-11-10 06:48:45 -05:00
Silvan Mosberger
fb2e311d1e
root5: Fix build with Python 3.11
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Was broken since the Python update from https://github.com/NixOS/nixpkgs/pull/251878
This should fix the apfelgrid and applgrid builds, not tested yet
2023-11-09 19:01:58 +01:00
Weijia Wang
5827957a06
root: drop patches
2023-11-07 02:42:16 +01:00
R. Ryantm
9ca6747e6b
boinc: 7.24.1 -> 7.24.2
2023-10-31 08:44:00 +00:00
github-actions[bot]
fb3e2499b7
Merge master into staging-next
2023-10-21 00:02:17 +00:00
R. Ryantm
06c6fb463b
root: 6.28.06 -> 6.28.08
2023-10-20 14:40:50 -04:00
github-actions[bot]
c61915bc96
Merge master into staging-next
2023-10-17 06:01:22 +00:00
Weijia Wang
9f628e292e
tulip: 5.6.1 -> 5.7.2
2023-10-17 00:10:30 +02:00
Maximilian Bosch
5497c7ac5d
root: fix build w/ glibc-2.38
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Failing Hydra build: https://hydra.nixos.org/build/230518136
2023-09-24 15:12:03 +02:00
Fabián Heredia Montiel
d32595dad1
Merge pull request #249590 from Luflosi/update/boinc
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boinc: 7.22.2 -> 7.24.1
2023-09-13 23:26:57 -05:00
R. Ryantm
7310af91d4
cytoscape: 3.10.0 -> 3.10.1
2023-09-05 11:47:11 +00:00
Dmitry Kalinkin
3c15feef77
root: 6.26.10 -> 6.28.06 ( #215187 )
2023-09-04 12:24:30 -04:00
ajs124
de1d98cabe
vite: 1.2pre1543 -> unstable-2022-05-17
2023-09-04 13:54:49 +02:00
Weijia Wang
2a01448de1
Merge pull request #248805 from r-ryantm/auto-update/openmvs
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openmvs: 2.1.0 -> 2.2.0
2023-09-01 13:52:30 +02:00
Michael Raskin
5ab5c5d6c7
golly: 4.1 -> 4.2
2023-08-31 00:45:02 +02:00
Luflosi
dc24d56846
boinc: 7.22.2 -> 7.24.1
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https://github.com/BOINC/boinc/releases/tag/client_release%2F7.24%2F7.24.0
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.24%2F7.24.1
2023-08-16 18:35:16 +02:00
Pol Dellaiera
3eb7f7a63b
Merge pull request #248683 from oxij/tree/source-root-continues-3
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treewide: cleanup `sourceRoot` and `setSourceRoot` usage
2023-08-15 05:53:52 +02:00
Artturin
25eef24033
treewide: Don't hardcode nix store in patchelf calls
2023-08-13 05:44:01 +03:00
