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Commit Graph

2887 Commits

Author SHA1 Message Date
Ryan Mulligan
32f9c619f5
Merge pull request #67969 from petabyteboy/feature/remove-dobuild 
treewide: remove uses of doBuild and doConfigure
 2019-09-02 15:13:47 -07:00
Milan Pässler (work)
185fd61631 treewide: remove uses of doBuild and doConfigure 
doBuild and doConfigure are not actually used by any builders, they were
probably added by mistake and just confuse people.
 2019-09-02 23:42:12 +02:00
Emily
d1dfaa79e3 symbiyosys: fix path to bash (again) 
/usr/bin/env works on NixOS normally, but previously sby would fail if
used from inside the Nix sandbox.
 2019-09-01 14:22:49 -05:00
Tadeo Kondrak
2aa9b655f4
kallisto: 0.43.1 -> 0.46.0 2019-08-31 14:06:31 -06:00
Frederik Rietdijk
96e5474329 Merge master into staging-next 2019-08-31 18:04:31 +02:00
Alyssa Ross
1da1a7a479 pari: 2.11.1 -> 2.11.2 2019-08-31 13:33:00 +00:00
Alexander
35ac3344e7 colmap: init at 3.5 (#67759) 
* colmap: init at 3.5
 2019-08-31 08:06:46 -04:00
Lassulus
a8d26fc34a
Merge pull request #63127 from bzizou/trimal 
trimal: init at 1.4.1
 2019-08-31 13:04:41 +02:00
Frederik Rietdijk
fc74ba8291 Merge master into staging-next 2019-08-31 09:50:38 +02:00
Léo Gaspard
8a4721d606
Merge pull request #64669 from luispedro/add_sortmerna 
sortmerna: init at 3.0.3
 2019-08-27 17:19:53 +02:00
Frederik Rietdijk
98640fd482 Merge master into staging-next 2019-08-27 16:36:47 +02:00
Luis Pedro Coelho
bc22c2e07f sortmerna: init at 3.0.3 
This is a useful package in bioinformatics, namely in processing
short-read sequencing data from metagenomes
 2019-08-27 00:37:43 +02:00
Jonathan Ringer
6f279584fd stp: 2.2.0 -> 2.3.3 2019-08-26 14:00:48 -07:00
Vladimír Čunát
985d1ac425
Merge branch 'master' into staging-next 
There were several more conflicts from name -> pname+version;
all auto-solved by kdiff3, hopefully OK.

Hydra nixpkgs: ?compare=1538611
 2019-08-25 14:57:11 +02:00
Gabriel Ebner
440c63a38a vampire: 4.2.2 -> 4.4 2019-08-25 14:43:51 +02:00
Nikolay Amiantov
9015d7a4f1 sumorobot-manager: init at 0.9.0 2019-08-24 19:11:27 +03:00
Vladimír Čunát
2e6bf42a22
Merge branch 'master' into staging-next 
There ver very many conflicts, basically all due to
name -> pname+version.  Fortunately, almost everything was auto-resolved
by kdiff3, and for now I just fixed up a couple evaluation problems,
as verified by the tarball job.  There might be some fallback to these
conflicts, but I believe it should be minimal.

Hydra nixpkgs: ?compare=1538299
 2019-08-24 08:55:37 +02:00
Emily
05c54717f8 symbiyosys: extend platforms 2019-08-23 02:14:40 -05:00
Marek Mahut
44d43368cb
Merge pull request #67155 from r-ryantm/auto-update/tulip 
tulip: 5.1.0 -> 5.2.1
 2019-08-21 21:40:06 +02:00
R. RyanTM
187ec1a8c6 tulip: 5.1.0 -> 5.2.1 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/tulip/versions
 2019-08-20 19:45:43 -07:00
Marek Mahut
51980d6830
Merge pull request #67019 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.20.4 -> 2.20.5
 2019-08-20 20:15:31 +02:00
R. RyanTM
41571dc81a picard-tools: 2.20.4 -> 2.20.5 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
 2019-08-19 21:40:40 -07:00
Marek Mahut
b8a9d33bcd
Merge pull request #66884 from markuskowa/upd-octopus 
octopus: 9.0 -> 9.1
 2019-08-19 11:53:01 +02:00
Marek Mahut
22aa7eadf1
Merge pull request #66871 from peterhoeg/f/apmplanner 
apmplanner2: fix build against qt 5.12
 2019-08-19 11:43:40 +02:00
Markus Kowalewski
a81bb36249
octopus: 9.0 -> 9.1 
* switch to GitLab download
* cleanup fftw dependence
 2019-08-19 10:24:44 +02:00
Peter Hoeg
374e0ad0a8 pulseview: use mkDerivation 2019-08-19 08:14:21 +02:00
Peter Hoeg
abbac2334b apmplanner2: fix build against qt 5.12 2019-08-19 14:01:55 +08:00
Frederik Rietdijk
f65aa21bb2 Merge master into staging-next 2019-08-18 12:53:44 +02:00
Vladimír Čunát
8ed485c67b
Merge #65948: tlaplusToolbox: 1.5.7 -> 1.6.0 2019-08-18 10:11:50 +02:00
Frederik Rietdijk
113dbfeb27
Merge pull request #66596 from emilazy/update-pypy-and-eda-tools 
Update PyPy and FOSS EDA tools
 2019-08-17 17:48:21 +02:00
volth
c814d72b51 treewide: name -> pname 2019-08-17 10:54:38 +00:00
Frederik Rietdijk
fe9a3e3e63 Merge staging-next into staging 2019-08-17 09:39:23 +02:00
Timo Kaufmann
192197dc6c
Merge pull request #65802 from timokau/sage-transient-debug 
sage: add patch to debug transient issue
 2019-08-17 00:33:05 +02:00
Timo Kaufmann
41bb319462 sage: avoid running out of memory during tests 2019-08-16 23:50:55 +02:00
markuskowa
8f5ce70861
Merge pull request #66665 from markuskowa/upd-molden 
molden: 6.1 -> 6.2
 2019-08-15 18:59:50 +02:00
Matthew Bauer
ae15177ade calc: don’t include glibc headers in closure 2019-08-15 23:31:14 +09:00
volth
46420bbaa3 treewide: name -> pname (easy cases) (#66585) 
treewide replacement of

stdenv.mkDerivation rec {
  name = "*-${version}";
  version = "*";

to pname
 2019-08-15 13:41:18 +01:00
Markus Kowalewski
5b0bbcbb6e
molden: 6.1 -> 6.2 2019-08-15 09:35:34 +02:00
Gabriel Ebner
0a1e131077 gmsh: opencascade support 2019-08-14 19:09:40 +02:00
Gabriel Ebner
f91904a889 calculix: init at 2.15 2019-08-14 19:09:40 +02:00
Emily
a51e3987ad symbiyosys: 2019.04.18 -> 2019.08.13 2019-08-14 00:14:22 -07:00
Dmitry Kalinkin
34224c7ba0
Merge pull request #66117 from veprbl/pr/hepmc_2_06_10 
hepmc: 2.06.09 -> 2.06.10
 2019-08-11 22:16:16 -04:00
Timo Kaufmann
3541df594e
Merge pull request #66396 from timokau/sage-undo-short 
sage: default to long tests again
 2019-08-10 13:16:00 +02:00
Lancelot SIX
8137a78adc
Merge pull request #66063 from lsix/drop_motu_client 
motu_client: drop
 2019-08-10 00:02:12 +02:00
Timo Kaufmann
f6265b0da5 sage: default to long tests again 
Changed by accident in 5e58c5f900.
 2019-08-09 18:42:14 +02:00
Timo Kaufmann
9ef44b3431 sage: move sympow cache to .sage 2019-08-09 17:45:14 +02:00
Timo Kaufmann
5e58c5f900 sympow: 1.018.1 -> 2.023.4 
Maintenance taken over by debian package maintainer jgmbenoit:
https://trac.sagemath.org/ticket/3360#comment:17

This moves sympow to his fork, since there is no offical
version-controlled source repository from the original author and they
do not seem to maintain sympow anymore. We had already accumulated quite
some patches from debian, who have effectively maintained sympow for a
while now.
 2019-08-09 17:45:08 +02:00
Ryan Mulligan
423e09b3b5
Merge pull request #66018 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.20.3 -> 2.20.4
 2019-08-06 21:44:53 -07:00
Gabriel Ebner
ef3b016545 Merge branch 'qalc330' 2019-08-06 09:08:58 +02:00
Gabriel Ebner
ca1895ace3 qalculate-gtk: 3.2.0 -> 3.3.0 2019-08-06 09:03:45 +02:00