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sortmerna: init at 3.0.3

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This is a useful package in bioinformatics, namely in processing
short-read sequencing data from metagenomes
This commit is contained in:
Luis Pedro Coelho 2019-07-12 15:35:03 +02:00
parent 2ca09a94be
commit bc22c2e07f
2 changed files with 40 additions and 0 deletions
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38
pkgs/applications/science/biology/sortmerna/default.nix Normal file
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@ -0,0 +1,38 @@
{ stdenv, cmake, rocksdb, rapidjson, pkgconfig, fetchFromGitHub, fetchpatch, zlib }:
stdenv.mkDerivation rec {
pname = "sortmerna";
version = "3.0.3";
src = fetchFromGitHub {
repo = pname;
owner = "biocore";
rev = "v${version}";
sha256 = "0zx5fbzyr8wdr0zwphp8hhcn1xz43s5lg2ag4py5sv0pv5l1jh76";
};
patches = [
(fetchpatch {
name = "CMakeInstallPrefix.patch";
url = "https://github.com/biocore/sortmerna/commit/4d36d620a3207e26cf3f588d4ec39889ea21eb79.patch";
sha256 = "0hc3jwdr6ylbyigg52q8islqc0mb1k8rrjadvjfqaxnili099apd";
})
];
nativeBuildInputs = [ cmake rapidjson pkgconfig ];
buildInputs = [ zlib rocksdb rapidjson ];
cmakeFlags = [
"-DCMAKE_BUILD_TYPE=Release"
"-DROCKSDB_HOME=${rocksdb}"
"-DRAPIDJSON_HOME=${rapidjson}"
];
meta = with stdenv.lib; {
description = "Tools for filtering, mapping, and OTU-picking from shotgun genomics data";
license = licenses.lgpl3;
platforms = platforms.x86_64;
homepage = https://bioinfo.lifl.fr/RNA/sortmerna/;
maintainers = with maintainers; [ luispedro ];
};
}

2
pkgs/top-level/all-packages.nix
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@ -22853,6 +22853,8 @@ in
somatic-sniper = callPackage ../applications/science/biology/somatic-sniper { };
sortmerna = callPackage ../applications/science/biology/sortmerna { };
stacks = callPackage ../applications/science/biology/stacks { };
star = callPackage ../applications/science/biology/star { };