Sergey Vinokurov
3a7feda68d
Update Folding@home client to 8.3.7 ( #295745 )
...
Depend re2, libevent during build sisnce 8.3.7 appears to link with
them. Depend on git because client wan’t to know what revision it
was built from.
Add zlib and expat to FHS environment because some workunits depend on
them and cause lots of rejections if those libraries are not
available. Unfortunately they don’t appear to be bundled as part
of work distribution.
2024-03-14 12:17:46 +01:00
Yueh-Shun Li
91b3db1309
treewide: fix sourceRoot for fetchgit-based src
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According to Nixpkgs manual[1] and NixOS 23.11 Release Note[2], the
`sourceRoot` attribute passed to `stdenv.mkDerivation` should be
specified as `"${src.name}"` or `"${src.name}/subdir"` when `src` is
produced using `fetchgit`-based fetchers.
`sourceRoot = "source"` or `sourceRoot = "source/subdir"` is based on
the assumption that the `name` attribute of these pre-unpacked fetchers
are always `"source"`, which is not the case. Expecting constant `name`
also makes the source FODs prone to irrelevent hashes during version
bumps.
[1]: https://nixos.org/manual/nixpkgs/unstable/#var-stdenv-sourceRoot
[2]: https://nixos.org/manual/nixos/stable/release-notes#sec-release-23.11
2024-03-09 07:53:25 +08:00
Mario Rodas
37d0669466
Merge pull request #287403 from trofi/graphia-gcc-13-fix-update
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graphia: 3.2 -> 4.2
2024-03-01 23:26:37 -05:00
R. Ryantm
6643d56edb
snakemake: 8.4.8 -> 8.4.12
2024-02-23 12:38:33 -05:00
Fabian Affolter
4646a0c7db
sasview: add changelog to meta
2024-02-19 16:02:14 +01:00
Fabian Affolter
711d382967
sasview: 5.0.4 -> 5.0.6
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Diff: https://github.com/SasView/sasview/compare/refs/tags/v5.0.4...v5.0.6
2024-02-19 16:01:09 +01:00
OTABI Tomoya
9e52c50c55
Merge pull request #289381 from r-ryantm/auto-update/snakemake
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snakemake: 8.4.4 -> 8.4.8
2024-02-19 23:16:21 +09:00
Dmitry Kalinkin
cb6f36e8ff
xrootd: fix plugin loading on Linux ( #289140 )
2024-02-17 15:38:01 -05:00
R. Ryantm
2444fc7fa5
snakemake: 8.4.4 -> 8.4.8
2024-02-16 21:15:11 +00:00
Dmitry Kalinkin
419da635c6
Merge pull request #285505 from GaetanLepage/xroot
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xrootd: 5.5.5 -> 5.6.6, python311Packages.xrootd: init at 5.6.6
2024-02-14 11:15:22 -05:00
Bouke van der Bijl
91414c639f
openmvg: unstable-2022-12-30 -> 2.1
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* Use the nixpkgs libraries instead of the vendored ones
* Add updateScript
Co-authored-by: Nick Cao <nickcao@nichi.co>
2024-02-14 11:23:46 +01:00
Gaetan Lepage
7b9e11995d
xrootd: 5.5.5 -> 5.6.6
...
Changelog: https://github.com/xrootd/xrootd/releases/tag/v5.6.6
Structured attrs don't work with cmakeFlags - only first item is passed.
Co-authored-by: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
2024-02-13 16:45:54 -05:00
R. Ryantm
1128be2775
openrefine: 3.7.7 -> 3.7.9
2024-02-11 17:18:59 +00:00
Weijia Wang
b95f9bd48c
javaPackages.jogl_2_4_0: rename to jogl
2024-02-10 18:00:38 +01:00
Sergei Trofimovich
e006445420
graphia: 3.2 -> 4.2
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The main change is the build fis against `gcc-13`
https://hydra.nixos.org/build/247540136 :
/build/source/source/thirdparty/breakpad/src/client/linux/handler/minidump_descriptor.h:115:3: error: 'uintptr_t' does not name a type
115 | uintptr_t address_within_principal_mapping() const {
| ^~~~~~~~~
Changes:
- https://github.com/graphia-app/graphia/releases/tag/4.0
- https://github.com/graphia-app/graphia/releases/tag/4.1
- https://github.com/graphia-app/graphia/releases/tag/4.2
2024-02-08 23:30:17 +00:00
R. Ryantm
0b9427cf71
snakemake: 8.3.2 -> 8.4.4
2024-02-06 18:59:24 -05:00
Raphael Das Gupta
13f6915775
openrefine: set meta.mainProgram
2024-02-06 13:49:34 +01:00
Weijia Wang
ab45f7963c
Merge pull request #282757 from r-ryantm/auto-update/bada-bib
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bada-bib: 0.8.0 -> 0.8.1
2024-02-04 23:44:55 +01:00
arthsmn
4ee1815267
gplates: 2.3.0 -> 2.4
2024-02-04 14:19:31 +01:00
Robert Scott
e5e19d75c0
Merge pull request #265959 from risicle/ris-openrefine
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openrefine: init at 3.7.7
2024-02-03 14:28:55 +00:00
Robert Scott
272f7bb1f4
openrefine: init at 3.7.7
2024-02-03 13:37:59 +00:00
h7x4
51c3e2b494
Merge pull request #285171 from r-ryantm/auto-update/boinc
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boinc: 7.24.2 -> 7.24.3
2024-02-01 20:17:27 +01:00
Weijia Wang
a07361dd1c
Merge pull request #285382 from wegank/gplates-fix
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gplates: fix runtime error
2024-02-01 19:42:53 +01:00
Weijia Wang
fa0efec1d5
gplates: fix runtime error
2024-01-31 23:16:41 +01:00
Dmitry Kalinkin
f125235a38
root: 6.30.02 -> 6.30.04 ( #285339 )
2024-01-31 15:25:14 -05:00
R. Ryantm
6fed14e6ac
boinc: 7.24.2 -> 7.24.3
2024-01-31 03:49:58 +00:00
Jonas Chevalier
b1e30d76d4
fahclient: 8.1.18 -> 8.3.1 ( #281830 )
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* fahclient: 8.1.18 -> 8.3.1
* Update pkgs/applications/science/misc/foldingathome/client.nix
Co-authored-by: Robert Schütz <github@dotlambda.de>
* Update pkgs/applications/science/misc/foldingathome/client.nix
Co-authored-by: Robert Schütz <github@dotlambda.de>
---------
Co-authored-by: Robert Schütz <github@dotlambda.de>
2024-01-29 18:17:16 +01:00
R. RyanTM
ec66ff787e
snakemake: 8.2.1 -> 8.3.2 ( #284218 )
2024-01-27 09:26:23 -05:00
R. Ryantm
4765bc88c6
bada-bib: 0.8.0 -> 0.8.1
2024-01-22 02:16:27 +00:00
Fabian Affolter
48433b4d36
cwltool: 3.1.20230213100550 -> 3.1.20240112164112
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Diff: https://github.com/common-workflow-language/cwltool/compare/refs/tags/3.1.20230213100550...3.1.20240112164112
Changelog: https://github.com/common-workflow-language/cwltool/releases/tag/3.1.20240112164112
2024-01-21 10:32:48 +01:00
Dmitry Kalinkin
346cb05310
snakemake: 8.0.1 -> 8.2.1
2024-01-17 16:28:55 -05:00
Robert Scott
12a82c9c78
Merge pull request #279386 from r-ryantm/auto-update/rink
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rink: 0.6.3 -> 0.7.0
2024-01-12 22:08:27 +00:00
Dmitry Kalinkin
be5b82b259
Merge pull request #275882 from veprbl/pr/snakemake_8_0_1
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snakemake: 7.32.4 -> 8.0.1
2024-01-07 11:03:10 -05:00
R. Ryantm
a373789932
rink: 0.6.3 -> 0.7.0
2024-01-07 14:39:33 +00:00
Weijia Wang
553ccf3dfe
tulip: fix build on darwin
2024-01-03 22:16:58 +01:00
R. Ryantm
c777f0bfa7
tulip: 5.7.2 -> 5.7.3
2023-12-28 07:46:06 +00:00
Dmitry Kalinkin
7ff81781f2
snakemake: 7.32.4 -> 8.0.1
2023-12-21 14:32:05 -05:00
Dmitry Kalinkin
d245890087
root: 6.28.10 -> 6.30.02 ( #274348 )
2023-12-17 05:20:40 -05:00
Dmitry Kalinkin
d4af6e420f
root: build with root7 and webgui ( #272723 )
2023-12-15 08:43:44 -05:00
Dmitry Kalinkin
1a5412e140
toil: 5.7.1 -> 5.12.0 ( #273274 )
2023-12-12 16:04:33 -05:00
Dmitry Kalinkin
190cb5fc41
root: 6.28.08 -> 6.28.10
2023-12-07 12:36:03 -05:00
Jonas Chevalier
80d540bd31
fahclient: wrap in FHS ( #271994 )
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Folding@home downloads arbitrary binaries that it runs and that have the
wrong loader.
Fixes https://github.com/NixOS/nixpkgs/pull/246832#issuecomment-1837625014
2023-12-05 10:04:09 +01:00
sternenseemann
8c59811e4e
root5: broken with clang
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Seems like any clang version > 5 doesn't work. Since root >= 6.0 is
available from nixpkgs, I think it is reasonable to mark it as broken
for now. Maybe someone can figure out if it is possible to backport a
fix from root >= 6.0.
2023-12-04 19:43:08 +01:00
R. Ryantm
fc9bec86de
simgrid: 3.34 -> 3.35
2023-11-28 16:59:53 +00:00
Jonas Chevalier
a403a118d1
fahclient: 7.6.21 -> 8.1.18 ( #246832 )
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Rebuild from source
2023-11-27 14:20:58 +01:00
Pierre Bourdon
f4db50bafb
Merge pull request #269700 from NixOS/pr/root_warning_fix
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root: fix excessive build log size
2023-11-25 10:38:13 +01:00
Dmitry Kalinkin
8ae6154b2b
root: fix excessive build log size
2023-11-24 14:33:55 -05:00
Renato Garcia
3c87cb32f0
snakemake: 7.29.0 -> 7.32.4 ( #266543 )
2023-11-10 06:48:45 -05:00
Silvan Mosberger
fb2e311d1e
root5: Fix build with Python 3.11
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Was broken since the Python update from https://github.com/NixOS/nixpkgs/pull/251878
This should fix the apfelgrid and applgrid builds, not tested yet
2023-11-09 19:01:58 +01:00
Weijia Wang
5827957a06
root: drop patches
2023-11-07 02:42:16 +01:00