R. Ryantm
e0c3da7946
jmol: 14.32.28 -> 14.32.30
2022-03-08 16:34:40 +00:00
R. Ryantm
f3288c60f0
marvin: 22.3.0 -> 22.7.0
2022-03-06 07:45:27 +00:00
Bobby Rong
cf7e4cac05
Merge pull request #161194 from wucke13/mission-planner
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mission-planner: 1.3.74 -> 1.3.76
2022-03-06 13:28:50 +08:00
Dmitry Kalinkin
149d68268d
root: fix ROOTConfig.cmake.in patching
2022-03-04 21:04:19 -05:00
7c6f434c
d5058ae9e5
Merge pull request #162688 from r-ryantm/auto-update/jmol
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jmol: 14.32.24 -> 14.32.28
2022-03-04 20:43:10 +00:00
Bruno Bzeznik
7d62054650
angsd: init at 0.937
2022-03-04 09:17:35 -06:00
Matthew Wakefield
e85b65f986
minimap2: enable aarch64 builds ( #161169 )
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Co-authored-by: Bobby Rong <rjl931189261@126.com>
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
2022-03-04 12:27:29 +01:00
R. Ryantm
f5258a7d12
jmol: 14.32.24 -> 14.32.28
2022-03-03 23:44:55 +00:00
Justin Bedo
89eff15f31
last: 1260 -> 1268
2022-03-02 13:35:56 +11:00
Gabriel Ebner
8934eb7c91
Merge pull request #157843 from jvanbruegge/isabelle_setup
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isabelle: Rebuild isabelle_setup.jar
2022-03-01 12:11:25 +01:00
Sandro
b7ec0afb59
Merge pull request #162205 from Stunkymonkey/treewide-vVersion
2022-02-28 14:26:16 +01:00
Felix Buehler
1573dbdcd0
treewide: fix versions starting with 'v'
2022-02-28 13:05:18 +01:00
Felix Buehler
fe7678ca81
raxml-mpi: remove appendToName to have a consistent package name for repology
2022-02-28 12:46:15 +01:00
Felix Buehler
13dca33cdc
neuron-mpi: remove appendToName to have a consistent package name for repology
2022-02-28 12:46:15 +01:00
Bobby Rong
f35d1b8568
Merge pull request #160332 from florentc/tlaps
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tlaps: 1.4.3 -> 1.4.5
2022-02-28 16:33:42 +08:00
Guillaume Girol
b9ecdae495
Merge pull request #161344 from ulrikstrid/ulrikstrid/tree-wide-native-inputs
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ocamlPackages tree-wide: Move buildInputs that should be nativeBuildInputs
2022-02-27 19:49:07 +00:00
7c6f434c
da576d8a4a
Merge pull request #161876 from FRidh/sage-python
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Sage: make it possible to extend the Python runtime environment with additional packages
2022-02-27 19:02:59 +00:00
Vincent Laporte
68e4b639a3
Merge pull request #161111 from ulrikstrid/ulrikstrid/coq-move-dune-to-native
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coq: Move dune, ocaml and findlib to nativeBuildInputs
2022-02-26 08:54:53 +01:00
R. Ryantm
21a1125f37
gmsh: 4.9.4 -> 4.9.5
2022-02-25 14:21:11 -08:00
K900
cb2cfba6f7
treewide: switch all desktop file generators to new API
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Notably:
- remove explicit arguments that match the defaults
- convert everything to the right Nix types
2022-02-25 13:40:38 -08:00
Frederik Rietdijk
330d9344d2
sage: make it possible not to rebuild sage-tests
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Requiring sage-tests as build input just so it gets build is a bit
unfortunatey but understandable. This commit introduces an option to not
add sage-tests as a dependency. This is preferred in case e.g. Python
packages are added to the environment.
2022-02-25 21:27:14 +01:00
Frederik Rietdijk
7442533bf1
sage: support adding extra Python packages to environment
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mysage = sage.override { extraPythonPackages = ps: with ps; [ dask ]; };
Note that the sage-tests are executed again as well, which is not very nice.
2022-02-25 21:18:23 +01:00
R. Ryantm
1e7c64aae1
bcftools: 1.14 -> 1.15
2022-02-25 11:12:05 -08:00
markuskowa
49186d631f
Merge pull request #161635 from r-ryantm/auto-update/jmol
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jmol: 14.32.21 -> 14.32.24
2022-02-25 13:42:31 +01:00
Ulrik Strid
7e20e9039e
coqPackages: tree-wide move packages to nativeBuildInputs and add strictDeps = true
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Co-authored-by: Vincent Laporte <vbgl@users.noreply.github.com>
2022-02-25 07:54:17 +01:00
Vincent Laporte
056c34167d
why3: 1.4.0 → 1.4.1
2022-02-25 06:00:09 +01:00
Justin Bedő
6b477d556d
Merge pull request #161695 from r-ryantm/auto-update/picard-tools
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picard-tools: 2.26.10 -> 2.26.11
2022-02-25 08:27:23 +11:00
R. Ryantm
d6a24fc108
cwltool: 3.1.20220217222804 -> 3.1.20220221074232
2022-02-24 15:52:49 -05:00
R. Ryantm
ce9d28cc49
picard-tools: 2.26.10 -> 2.26.11
2022-02-24 17:34:18 +00:00
Ulrik Strid
48df7cdbba
coq: Move dune to nativeBuildInputs and add ocaml, findlib and menhir
2022-02-24 14:39:45 +01:00
Ulrik Strid
a13cdfe520
ocamlPackages tree-wide: Move buildInputs that should be nativeBuildInputs
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To keep this for the future we also strictDeps where possible, including for janePackages, topkg, oasis and ocamlbuild.
This makes some closures significantly smaller and makes cross compilation easier
2022-02-24 14:39:27 +01:00
R. Ryantm
1b8518cadd
jmol: 14.32.21 -> 14.32.24
2022-02-24 08:42:12 +00:00
Renaud
65ecaa9903
Merge pull request #150078 from r-ryantm/auto-update/gurobi
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gurobi: 9.1.2 -> 9.5.0
2022-02-23 22:08:43 +01:00
Markus Kowalewski
469ae42107
gromacs: 2021.5 -> 2022
2022-02-23 14:47:26 +01:00
Renaud
a723c88d4e
Merge pull request #159967 from r-ryantm/auto-update/workcraft
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workcraft: 3.3.5 -> 3.3.6
2022-02-23 13:30:39 +01:00
Renaud
359d63179e
Merge pull request #160360 from r-ryantm/auto-update/qalculate-gtk
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qalculate-gtk: 3.22.0 -> 4.0.0
2022-02-23 08:30:49 +01:00
Bobby Rong
93883402a4
Merge pull request #160594 from Cogitri/bada-bib
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bada-bib: 0.4.1 -> 0.5.1
2022-02-22 12:10:40 +08:00
Wanja Zaeske
2d67cc2bf6
removing maintainer wucke13 from some packages
2022-02-21 22:58:18 +01:00
ajs124
55bf481a21
Merge pull request #159212 from helsinki-systems/init/febio-studio
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febio-studio: init at 1.6.1
2022-02-21 17:24:33 +01:00
Scriptkiddi
4e60a4823b
febio-studio: init at 1.6.1
2022-02-21 16:43:36 +01:00
Rasmus Thomsen
87c1d9f92c
bada-bib: 0.4.1 -> 0.5.1
2022-02-21 16:33:50 +01:00
Wanja Zaeske
58d5eb70e2
mission-planner: 1.3.74 -> 1.3.76
2022-02-21 09:51:16 +01:00
R. Ryantm
c35aa0a0f3
cwltool: 3.1.20220217190813 -> 3.1.20220217222804
2022-02-21 01:31:33 -05:00
markuskowa
48ab0d0233
Merge pull request #160924 from qbg/submit/mathematica-13.0.1
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mathematica: 13.0.0 -> 13.0.1
2022-02-20 10:23:22 +01:00
R. RyanTM
286ecff9e0
getdp: 3.3.0 -> 3.4.0
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(#150127 )
2022-02-19 22:41:33 +01:00
Mario Rodas
94723d21f9
Merge pull request #159540 from r-ryantm/auto-update/marvin
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marvin: 21.20.0 -> 22.3.0
2022-02-19 15:59:08 -05:00
qbg
f4f52d9d70
mathematica: 13.0.0 -> 13.0.1
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https://wolfram.com/mathematica/quick-revision-history.html#v130
2022-02-19 11:26:53 -06:00
Millian Poquet
bc2604732e
simgrid: mark as broken on darwin
2022-02-19 10:05:17 +01:00
Millian Poquet
3f804f68bc
simgrid: 3.28 -> 3.30 + python + clean
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- use latest SimGrid release
- enable the python binding (in new output "python")
- reviews from PR 141040 have been applied
2022-02-19 10:05:12 +01:00
Ulrik Strid
4150bf02b5
coq: allow static linking by moving wrapGAppsHook to nativeBuildInputs
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Co-authored-by: Vincent Laporte <vbgl@users.noreply.github.com>
2022-02-18 15:17:04 +01:00
