9422 Commits

Author	SHA1	Message	Date
Gaetan Lepage	eba8c579be	mujoco: 3.1.4 -> 3.1.5 ... Diff: https://github.com/google-deepmind/mujoco/compare/refs/tags/3.1.4...3.1.5 Changelog: https://github.com/google-deepmind/mujoco/releases/tag/3.1.5	2024-05-07 23:31:59 +02:00
Doron Behar	b771106b51	Merge pull request #309607 from alyaeanyx/qalculate-5.1.0 ... {libqalculate, qalculate-gtk, qalculate-qt}: 5.0.0 -> 5.1.0	2024-05-07 08:43:58 +03:00
7c6f434c	791853141d	Merge pull request #309548 from Tom-Hubrecht/sagemath-deps ... sage: Add as passthru.tests to critical dependencies	2024-05-07 05:17:31 +00:00
Tom Hubrecht	de1618552c	sage: Add as passthru.tests to critical dependencies	2024-05-06 19:51:19 +02:00
alyaeanyx	3489da471e	{libqalculate, qalculate-gtk, qalculate-qt}: 5.0.0 -> 5.1.0	2024-05-06 19:28:29 +02:00
Nick Cao	d2e6f60e02	Merge pull request #309432 from r-ryantm/auto-update/messer-slim ... messer-slim: 4.2.1 -> 4.2.2	2024-05-06 10:34:40 -04:00
OTABI Tomoya	5656abaea3	Merge pull request #308676 from natsukium/dssp/update ... dssp: 4.4.5 -> 4.4.7, libcifpp: 7.0.3 -> 7.0.4	2024-05-06 23:20:52 +09:00
R. Ryantm	d5edb2e2f5	messer-slim: 4.2.1 -> 4.2.2	2024-05-06 01:54:25 +00:00
Nick Cao	f68bc714df	Merge pull request #309136 from TomaSajt/getdp ... getdp: fix hash	2024-05-05 10:05:42 -04:00
Nick Cao	f3b0480d94	Merge pull request #309230 from r-ryantm/auto-update/eigenmath ... eigenmath: 0-unstable-2024-04-26 -> 0-unstable-2024-05-03	2024-05-05 10:01:07 -04:00
R. Ryantm	ae9edd3d07	eigenmath: 0-unstable-2024-04-26 -> 0-unstable-2024-05-03	2024-05-05 09:28:51 +00:00
TomaSajt	4b0b8cca0c	getdp: fix hash	2024-05-05 00:31:28 +02:00
Weijia Wang	875e3375d8	Merge pull request #307629 from r-ryantm/auto-update/gretl ... gretl: 2023c -> 2024a	2024-05-04 22:45:17 +02:00
Weijia Wang	b8cb60c6fe	Merge pull request #306674 from r-ryantm/auto-update/jbrowse ... jbrowse: 2.5.0 -> 2.11.0	2024-05-04 15:49:20 +02:00
Weijia Wang	b6e5ed99c2	Merge pull request #305759 from r-ryantm/auto-update/rink ... rink: 0.7.0 -> 0.8.0	2024-05-04 15:09:03 +02:00
Vladimír Čunát	e96601ecf0	Merge #306080: staging-next 2024-04-22	2024-05-03 17:36:08 +02:00
7c6f434c	87d41cc77a	Merge pull request #308403 from r-ryantm/auto-update/eprover ... eprover: 3.0.03 -> 3.1	2024-05-03 15:02:03 +00:00
Thomas Gerbet	6a3601a1c6	R: apply patch for CVE-2024-27322 ... https://hiddenlayer.com/research/r-bitrary-code-execution/ Patch has been identified by checking the SCM logs. I was not able to find another part of the patch. Fedora 39 went the same way in b1a4e124f2 See also https://github.com/spack/spack/issues/43932	2024-05-03 13:40:24 +02:00
natsukium	7d27d397a5	dssp: 4.4.5 -> 4.4.7 ... Diff: https://github.com/PDB-REDO/dssp/compare/refs/tags/v4.4.5...v4.4.7 Changelog: https://github.com/PDB-REDO/libcifpp/releases/tag/refs/tags/v4.4.7	2024-05-03 10:51:52 +09:00
github-actions[bot]	31135daf48	Merge master into staging-next	2024-05-02 18:01:05 +00:00
Pixis	b87a96cf1d	digital: fix desktop item and copy icons (#305171) ... * digital: refactor desktopItem fix desktopName change name, exec and icon to pname * digital: refactor installPhase copy icons run pre and post install hooks (we need postInstall to actually run copyDesktopItems)	2024-05-02 21:42:04 +08:00
Peder Bergebakken Sundt	db15bbc3d5	treewide: remove unreferenced patch files (#308127) ... Found with `fd \\.patch$ pkgs/ -x bash -c 'rg -F "{/}" pkgs/ -q || echo {}'`	2024-05-02 12:41:45 +00:00
Vladimír Čunát	725f48a252	Merge branch 'master' into staging-next	2024-05-02 09:05:49 +02:00
Weijia Wang	0599892e8e	Merge pull request #308244 from r-ryantm/auto-update/gtkwave ... gtkwave: 3.3.118 -> 3.3.119	2024-05-02 08:50:18 +02:00
R. Ryantm	9664aea5d1	eprover: 3.0.03 -> 3.1	2024-05-02 00:48:29 +00:00
Sandro	3eabaa6c36	Merge pull request #305305 from pmiddend/update-crystfel-to-0.11.0 ... crystfel: 0.10.2 -> 0.11.0	2024-05-01 23:30:02 +02:00
R. RyanTM	a16ec6bad3	last: 1542 -> 1543 (#307730)	2024-05-01 22:49:48 +02:00
Dmitry Kalinkin	aeebce2b87	Merge pull request #308122 from guitargeek/root_63006 ... root: 6.30.04 -> 6.30.06	2024-05-01 15:16:37 -04:00
github-actions[bot]	67f8ba4a30	Merge master into staging-next	2024-05-01 18:01:22 +00:00
Weijia Wang	5415cb3851	Merge pull request #308259 from r-ryantm/auto-update/igv ... igv: 2.17.3 -> 2.17.4	2024-05-01 17:58:08 +02:00
Aleksana	408a43cf9c	Merge pull request #308004 from TomaSajt/scotch ... scotch: use fetchFromGitLab, format and move to pkgs/by-name	2024-05-01 21:18:49 +08:00
Jonas Rembser	afde4332c3	root: don't do anything specific for Python 2 ... Python 2 support is deprecated in ROOT 6.30 and will be removed from 6.32, due to release in May: https://github.com/root-project/root/pull/13948	2024-05-01 14:58:12 +02:00
Jonas Rembser	ebce8ace41	maintainers: add guitargeek	2024-05-01 14:56:40 +02:00
Jonas Rembser	e81a95f980	root: remove the hack that disables the splash screen by default ... Remove the hack that disables the splash screen by default, as this has already been done in ROOT itself some time ago: https://github.com/root-project/root/pull/4187	2024-05-01 14:44:55 +02:00
Jonas Rembser	6665f67b4e	root: remove some explicit disabling of compiler warnings on clang ... Remove some explicit disabling of compiler warnings on clang. There is no need for that: we saw the warnings on our own CI and made sure to either fix or disable them.	2024-05-01 14:43:36 +02:00
Jonas Rembser	9792a8be2b	root: remove deprecated build flags ... Remove several deprecated or removed build options. See https://github.com/root-project/root/blob/v6-30-00-patches/cmake/modules/RootBuildOptions.cmake	2024-05-01 14:40:44 +02:00
Jonas Rembser	5c6453fd97	root: 6.30.04 -> 6.30.06	2024-05-01 14:34:38 +02:00
R. Ryantm	ecfbb79ecd	igv: 2.17.3 -> 2.17.4	2024-05-01 11:59:31 +00:00
R. Ryantm	b0dd926eec	gtkwave: 3.3.118 -> 3.3.119	2024-05-01 11:14:51 +00:00
K900	a9c7210d0b	Merge branch 'master' into staging-next	2024-05-01 09:37:47 +03:00
OTABI Tomoya	3caeeb35f2	Merge pull request #305464 from natsukium/pymol/update ... pymol: 2.5.0 -> 3.0.0	2024-05-01 00:08:09 +09:00
samlich	472ce9672e	pymol: remove no longer needed disableHardening	2024-05-01 00:07:19 +09:00
natsukium	2a5ba3d551	pymol: add natsukium as maintainer	2024-05-01 00:07:18 +09:00
natsukium	f97361a613	pymol: enable tests	2024-05-01 00:07:18 +09:00
TomaSajt	5f1a99cdaa	scotch: move to pkgs/by-name	2024-04-30 15:37:24 +02:00
Nick Cao	83bdb045f6	Merge pull request #307843 from NickCao/seqtk ... seqtk: fix cross compilation, drop custom installPhase	2024-04-30 09:30:10 -04:00
github-actions[bot]	09b96cbb7a	Merge master into staging-next	2024-04-30 12:01:12 +00:00
Weijia Wang	53dc0aa2d8	Merge pull request #307686 from r-ryantm/auto-update/xnec2c ... xnec2c: 4.4.12 -> 4.4.16	2024-04-30 13:36:44 +02:00
éclairevoyant	0696dc350a	Merge pull request #307745 from OPNA2608/fix/stableVersion/pkgs-applications ... pkgs/applications: Fix some unstableGitUpdater users	2024-04-30 11:25:40 +00:00
Weijia Wang	23cbc3c2b3	Merge branch 'master' into staging-next	2024-04-30 13:24:52 +02:00