1093 Commits

Author	SHA1	Message	Date
Weijia Wang	0396d3b0fb	Merge pull request #258254 from r-ryantm/auto-update/nest-mpi ... nest-mpi: 3.5 -> 3.6	2023-10-01 03:53:05 +02:00
Weijia Wang	d2f79d7443	Merge pull request #257369 from r-ryantm/auto-update/stacks ... stacks: 2.62 -> 2.65	2023-10-01 03:20:19 +02:00
Weijia Wang	293062bbdb	stacks: set platforms	2023-10-01 02:26:34 +02:00
Weijia Wang	00d57438ab	Merge pull request #256805 from r-ryantm/auto-update/neuron-mpi ... neuron-mpi: 8.2.2 -> 8.2.3	2023-10-01 00:44:58 +02:00
R. Ryantm	a78f4ed541	nest-mpi: 3.5 -> 3.6	2023-09-30 18:54:13 +00:00
natsukium	c90607c5a7	dssp: 4.4.2 -> 4.4.3 ... Diff: https://github.com/PDB-REDO/dssp/compare/refs/tags/v4.4.2...v4.4.3 Changelog: https://github.com/PDB-REDO/libcifpp/releases/tag/refs/tags/v4.4.3	2023-09-28 15:38:55 +09:00
R. Ryantm	90361534b7	stacks: 2.62 -> 2.65	2023-09-26 03:03:04 +00:00
github-actions[bot]	3e52e5929d	Merge master into staging-next	2023-09-25 12:01:02 +00:00
Mario Rodas	b289d79b8d	hmmer: add changelog to meta	2023-09-24 04:24:00 +00:00
R. Ryantm	272a0e1edb	hmmer: 3.3.2 -> 3.4	2023-09-24 04:23:47 +00:00
R. Ryantm	d660b340ee	neuron-mpi: 8.2.2 -> 8.2.3	2023-09-23 02:33:53 +00:00
github-actions[bot]	583877beb2	Merge master into staging-next	2023-09-22 18:01:00 +00:00
László Kupcsik	c678bba28c	trimmomatic: init at 0.39 ... Co-authored-by: Anderson Torres <torres.anderson.85@protonmail.com>	2023-09-22 13:50:18 -03:00
github-actions[bot]	3245a21e71	Merge master into staging-next	2023-09-19 06:01:00 +00:00
R. Ryantm	65033fea28	mosdepth: 0.3.4 -> 0.3.5	2023-09-19 00:55:31 +00:00
github-actions[bot]	9fd6a65a3a	Merge master into staging-next	2023-09-18 12:01:07 +00:00
R. Ryantm	e567f85a64	blast: 2.14.0 -> 2.14.1	2023-09-16 03:10:11 +00:00
Alyssa Ross	4a027948f9	Merge remote-tracking branch 'origin/staging-next' into staging ... Conflicts: pkgs/applications/radio/soapysdr/default.nix	2023-09-14 11:31:01 +00:00
Mario Rodas	48780fa239	Merge pull request #250309 from trofi/angsd-fix-parallel ... angsd: pull patch pending upstream inclusion for parallel build fix	2023-09-13 06:24:00 -05:00
github-actions[bot]	564dc31f47	Merge staging-next into staging	2023-09-12 18:01:30 +00:00
R. Ryantm	d5e6e8ac03	veryfasttree: 4.0.2 -> 4.0.3	2023-09-12 06:13:28 +00:00
github-actions[bot]	6d1f33a3ed	Merge staging-next into staging	2023-09-09 12:01:22 +00:00
R. Ryantm	ac77a8f7d0	igv: 2.16.1 -> 2.16.2	2023-09-09 05:56:58 +00:00
Sandro Jäckel	fccf04b620	treewide: replace -DCMAKE_BUILD_TYPE in cmakeFlags with cmakeBuildType	2023-09-08 14:18:26 +00:00
Ben Darwin	5bbcb4840b	mrtrix: unstable-2021-11-25 -> 3.0.4	2023-09-06 12:11:38 -04:00
Pol Dellaiera	55b00aa1f7	ants: update postInstall attribute	2023-09-02 23:09:28 +02:00
Pol Dellaiera	ad1e8a5b43	ants: update meta attributes	2023-09-02 23:08:44 +02:00
Pol Dellaiera	d04a1a598e	ants: use finalAttrs pattern	2023-09-02 22:18:19 +02:00
Pol Dellaiera	35145f9df0	ants: reformat file using nixpkgs-fmt	2023-09-02 22:17:19 +02:00
R. Ryantm	875e737bfa	ants: 2.4.4 -> 2.5.0	2023-09-02 11:57:30 +00:00
Justin Bedő	f25f30b17a	Merge pull request #251304 from r-ryantm/auto-update/sambamba ... sambamba: 1.0.0 -> 1.0.1	2023-09-01 15:30:29 +10:00
github-actions[bot]	e79f8fd118	Merge master into staging-next	2023-08-25 18:00:58 +00:00
R. Ryantm	e1b695a96f	iqtree: 2.2.2.6 -> 2.2.2.7	2023-08-25 12:25:13 +00:00
R. Ryantm	d564dfa4d0	sambamba: 1.0.0 -> 1.0.1	2023-08-25 06:20:00 +00:00
github-actions[bot]	a451dcf514	Merge master into staging-next	2023-08-24 06:01:14 +00:00
OTABI Tomoya	21943b1829	Merge pull request #248172 from alxsimon/bwa ... bwa-mem2: init at version 2.2.1	2023-08-24 09:28:34 +09:00
Alexis Simon	556dac0725	bwa-mem2: init at version 2.2.1 ... Co-authored-by: OTABI Tomoya <tomoya.otabi@gmail.com>	2023-08-23 15:02:06 -07:00
github-actions[bot]	56f5b9fafc	Merge staging-next into staging	2023-08-21 12:01:35 +00:00
OTABI Tomoya	325b09c1b5	Merge pull request #249878 from jbedo/last ... last: 1460 -> 1471	2023-08-21 16:09:10 +09:00
Emery Hemingway	ed353dc721	mosdepth: build with Nim-2	2023-08-21 07:32:46 +01:00
Emery Hemingway	9025a583b1	nimPackages.hts: 0.3.4 -> 0.3.23, rename from hts-nim	2023-08-21 07:32:46 +01:00
Sergei Trofimovich	f434e83d62	angsd: pull patch pending upstream inclusion for parallel build fix ... Without the change rapallel builds fail occasionally as: $ make --shuffle -j ... g++ -c -O3 -D__STDC_FORMAT_MACROS argStruct.cpp g++ -c -O3 -D__STDC_FORMAT_MACROS ancestral_likes.cpp gcc -c -O3 -D__STDC_FORMAT_MACROS fet.c g++ -c -O3 -D__STDC_FORMAT_MACROS abcGL.cpp g++ -c -O3 -D__STDC_FORMAT_MACROS pop1_read.cpp g++ -c -O3 -D__STDC_FORMAT_MACROS angsd.cpp g++ -c -O3 -D__STDC_FORMAT_MACROS abcHWE_F.cpp gcc -c -O3 -D__STDC_FORMAT_MACROS kprobaln.c g++ -c -O3 -D__STDC_FORMAT_MACROS mpileup.cpp argStruct.cpp:3:10: fatal error: version.h: No such file or directory 3 | #include "version.h" | ^~~~~~~~~~~ compilation terminated. angsd.cpp:11:10: fatal error: version.h: No such file or directory 11 | #include "version.h" | ^~~~~~~~~~~	2023-08-20 08:50:53 +01:00
github-actions[bot]	9145b3fd81	Merge staging-next into staging	2023-08-19 18:01:22 +00:00
Justin Bedo	8d9f56ac2d	last: 1460 -> 1471 ... Diff: https://gitlab.com/mcfrith/last/-/compare/refs/tags/1460...1471	2023-08-18 14:11:53 +10:00
natsukium	5462f67cc8	bamtools: init at 2.5.2	2023-08-18 00:17:15 +09:00
Pol Dellaiera	3eb7f7a63b	Merge pull request #248683 from oxij/tree/source-root-continues-3 ... treewide: cleanup `sourceRoot` and `setSourceRoot` usage	2023-08-15 05:53:52 +02:00
Jan Malakhovski	d098c821d6	treewide: remove unneeded dots and slashes in sourceRoots	2023-08-12 08:29:56 +00:00
Theodore Ni	851d2f6b95	macs2: 2.2.8 -> 2.2.9.1	2023-08-11 14:45:45 -07:00
R. Ryantm	6d530a6389	seqkit: 2.5.0 -> 2.5.1	2023-08-10 04:42:38 +00:00
R. Ryantm	a303664816	samtools: 1.17 -> 1.18	2023-08-07 01:22:06 +00:00