nordic-dev.net/nixpkgs
nordic-dev.net/nixpkgs
2
0
Fork 0
mirror of https://github.com/NixOS/nixpkgs.git synced 2024-11-22 06:53:01 +00:00
Code Issues Packages Projects Releases Wiki Activity

doc: update R section to mention .json files

Browse Source
This commit is contained in:
TomaSajt 2024-07-24 13:07:30 +02:00
parent d0dd8b9ff2
commit 7224c89e72
No known key found for this signature in database
GPG Key ID: F011163C050122A1
1 changed files with 13 additions and 10 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

23
doc/languages-frameworks/r.section.md
View File

@ -104,24 +104,27 @@ directory and executed as follows:
```bash
nix-shell generate-shell.nix
Rscript generate-r-packages.R cran > cran-packages.nix.new
mv cran-packages.nix.new cran-packages.nix
Rscript generate-r-packages.R cran > cran-packages.json.new
mv cran-packages.json.new cran-packages.json
Rscript generate-r-packages.R bioc > bioc-packages.nix.new
mv bioc-packages.nix.new bioc-packages.nix
Rscript generate-r-packages.R bioc > bioc-packages.json.new
mv bioc-packages.json.new bioc-packages.json
Rscript generate-r-packages.R bioc-annotation > bioc-annotation-packages.nix.new
mv bioc-annotation-packages.nix.new bioc-annotation-packages.nix
Rscript generate-r-packages.R bioc-annotation > bioc-annotation-packages.json.new
mv bioc-annotation-packages.json.new bioc-annotation-packages.json
Rscript generate-r-packages.R bioc-experiment > bioc-experiment-packages.nix.new
mv bioc-experiment-packages.nix.new bioc-experiment-packages.nix
Rscript generate-r-packages.R bioc-experiment > bioc-experiment-packages.json.new
mv bioc-experiment-packages.json.new bioc-experiment-packages.json
```
`generate-r-packages.R <repo>` reads `<repo>-packages.nix`, therefore
`generate-r-packages.R <repo>` reads `<repo>-packages.json`, therefore
the renaming.
The contents of a generated `*-packages.json` file will be used to
create a package derivation for each R package listed in the file.
Some packages require overrides to specify external dependencies or other
patches and special requirements. These overrides are specified in the
`pkgs/development/r-modules/default.nix` file. As the `*-packages.nix`
`pkgs/development/r-modules/default.nix` file. As the `*-packages.json`
contents are automatically generated it should not be edited and broken
builds should be addressed using overrides.