Commit Graph

1004 Commits

Author SHA1 Message Date
Douglas Gillespie
e3ffd56f69 Merge branch 'restart' of https://github.com/douggillespie/PAMGuard into restart 2024-03-04 12:28:42 +00:00
Douglas Gillespie
e6c2f325b2 Binary store
Fix err in binary footer where count of objects also included the count
of noise measurements.
2024-03-02 10:43:41 +00:00
Jamie Mac
791e09a2fd Updates to FX display 2024-03-01 17:04:44 +00:00
Jamie Mac
45bf890a62 Implement zip model for deep learning classifier.
Implement zip models which allow packaging of deep learning models with metadata\
Fix TDdsiplayFX spinner bug
Bug fixes for deep learning module after testing
Implement a validator to warn if users have selected all or no classes for binary classifcation.
2024-03-01 15:23:16 +00:00
Jamie Mac
98e7d55034 Bug fixes to CPOD imports and implementing a zip model in PAMGuard. 2024-02-28 17:04:18 +00:00
Douglas Gillespie
45b99273fa Restore single param call into PamParameterSet.autoGenerate 2024-02-27 19:09:58 +00:00
Douglas Gillespie
c36ad2a33a Fix settings load.
Problems in viewer mode with long (>50char) settings names which don't
get fully stored in the database. Fixed by only looking at the start of
the name. Better to not use such long names.
2024-02-27 15:55:02 +00:00
Douglas Gillespie
2721095a03 Fix compound data selector V2.02.10b
also a bug in logger forms if malformed UDF's
2024-02-27 14:08:22 +00:00
Jamie Mac
79caa2a388 Bug fixes to CPOD import
Fixed CPOD sample time which caused an import issue when both CP1 and CP3 files were imported
2024-02-26 15:48:52 +00:00
Jamie Mac
e8777ed6db Bug fix to Group localiser in offline mode
The group localiser was not loading hydrophone data
2024-02-26 14:36:38 +00:00
Jamie Mac
ea0be6ae9c Merge branch 'deep_learning' of https://github.com/macster110/PAMGuard into deep_learning 2024-02-26 14:35:24 +00:00
Jamie Mac
1069d1ecc3 Updates to FX GUI 2024-02-23 17:01:52 +00:00
Douglas Gillespie
1200b13f95 Exception handling in CTD 2024-02-23 15:53:00 +00:00
Jamie Mac
08005c06e1 Updates to the decimator FX 2024-02-23 11:59:44 +00:00
Jamie Mac
8b4dbceee8 Some bug fixes 2024-02-23 09:12:10 +00:00
Douglas Gillespie
156952bafe Update MHTClickTrainAlgorithm.java
Synchronize calls into MHT Algorithm across threads (can mess up during restarts otherwise)
2024-02-22 17:40:45 +00:00
Jamie Mac
f9f29bae75 Updates to CPOD module
Rewrote the importing so it works with CP1 and CP3 files
Fixed several issues in the TD display plotting waveforms
Fixed click train classification flags for CPOD and FPOD data
2024-02-16 16:06:31 +00:00
Jamie Mac
934000fd9c Rewrite import thread code because it's too clunky and slow. 2024-02-15 17:02:18 +00:00
Douglas Gillespie
e491028ef7
Merge pull request #66 from PAMGuard/main
merge from main
2024-02-15 16:52:29 +00:00
Douglas Gillespie
d2263bbba5 Functions for better restarting after buffer overflow. 2024-02-15 16:48:33 +00:00
Jamie Mac
66fed778a3 Bug fixes to CPOD stuff 2024-02-15 14:21:44 +00:00
Jamie Mac
6314c90467 Get CPOD click train import working. 2024-02-14 14:27:11 +00:00
Jamie Mac
45b0788c0d Updates to imorting 2024-02-14 06:53:25 +00:00
Jamie Mac
66fb82743b Updates to CPOD module
Display imporevements
2024-02-14 06:24:29 +00:00
Jamie Mac
0f220102c8 Implementing FPOD importing 2024-02-13 11:58:15 +00:00
Jamie Mac
5dc0e35605 Updates to CPOD import and FX
Sorted CSS out so that is accepts multiple stylesheets
Sorted plotting of waveforms from FPOD on dataPlotFX
Sorting out datamap and viewer model for FX GUI
2024-02-09 16:59:30 +00:00
Jamie Mac
f1553215c9 Create decimator.svg 2024-02-09 14:08:29 +00:00
Jamie Mac
c9d9b9fb70 Add FX GUI for decimator module 2024-02-09 14:02:12 +00:00
Douglas Gillespie
21b4bc130d Hydrophone data loading
Change how hydrophone data are loaded in viewer. Don't load ALL data.
Load the loading period + some before the load period which will be one
minute of data PLUS an extra n*2 data before that extra minute where n
is the number of hydrophones.
2024-02-09 11:53:35 +00:00
Jamie Mac
9fb40b055c Merge branch 'deep_learning' of https://github.com/macster110/PAMGuard into deep_learning 2024-02-08 09:30:12 +00:00
Jamie Mac
3e2997dcca Change CSS to use arrays instead of a string
Cahnged the default style so it returns an array of strings. This allows multiple stylesheets to be added per style.
2024-02-08 09:28:49 +00:00
Jamie Mac
68953d12fb Updates to FPOD and PAMGuardFX 2024-02-07 12:39:13 +00:00
Douglas Gillespie
e52701353a Fix data integrity bug
Fix of bug that 'fixed' event start and end times in database for linked
parent / child event tables. Error was caused by a mix up between
ParentID and ParentUID fields.
2024-02-05 13:34:15 +00:00
Jamie Mac
e25b945d06 Abstracting archive models (Ketos, Koogu and Zip) 2024-02-02 17:00:35 +00:00
Douglas Gillespie
66b73c45e2 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main 2024-02-02 09:08:19 +00:00
Douglas Gillespie
0dc47fcb0b click display arrangement
Added options to NOT automatically rearrange all the windows in the
click display every time the display size changes
2024-02-02 09:07:55 +00:00
Jamie Mac
9957bd3fa3 Implementing FPOD and updates to deep leanring module 2024-02-01 16:14:09 +00:00
Douglas Gillespie
9609546602
Merge pull request #65 from douggillespie/Tethys
Tethys
2024-01-30 15:01:04 +00:00
Douglas Gillespie
67e5841668
Merge pull request #64 from PAMGuard/main
Merge from main
2024-01-30 15:00:00 +00:00
Douglas Gillespie
9fe8e35322
MErge from dg (#127)
* updating Tethys help

* added help details server connection & calibration

* Reporting outputs to user

Use Pamguard WarnOnce system to show a message of success or failure
after attempting to output to Tethys.

* Removing empty fields

Start of implementation of code that can remove empty fields from
objects before they are written.

* More help documentation

Continued writing general export help.
Added new css style
Added image

* Fix type in Deployment export

* Prevent single deployment export

For now, disable the option to export a single Deployment document for
multiple recording periods.

* System to search species codes

Search the ITIS species codes in Tethys to find ITIS codes. Search can
be on a common or scientific name.

* Data blocks help + species codes

More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs.  Includes supporting images

* Improved dialog for finding species codes

Now has a progress bar to block GUI while searching database.

* Add species codes TOC in help

* Documented new species search in help

* Nilus Checker

Can check a Nilus class to see if it's missing required objects and be
used to remove empty fields (e.g. zero length strings) from an object.

* fixed anchor html problem

* Messing around with checking of required fields in nilus objects.

* split Tethys help files into smaller chunks

* Update button enablers

And reinstate output of a single deployment document, with non-recording
periods stores in the QA section

And update help TOC for latest help documents.

---------

Co-authored-by: Marie <marie.roch@sdsu.edu>
2024-01-30 14:58:50 +00:00
Douglas Gillespie
1c532906ca
Merge from dg (#126)
* updating Tethys help

* added help details server connection & calibration

* Reporting outputs to user

Use Pamguard WarnOnce system to show a message of success or failure
after attempting to output to Tethys.

* Removing empty fields

Start of implementation of code that can remove empty fields from
objects before they are written.

* More help documentation

Continued writing general export help.
Added new css style
Added image

* Fix type in Deployment export

* Prevent single deployment export

For now, disable the option to export a single Deployment document for
multiple recording periods.

* System to search species codes

Search the ITIS species codes in Tethys to find ITIS codes. Search can
be on a common or scientific name.

* Data blocks help + species codes

More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs.  Includes supporting images

* Improved dialog for finding species codes

Now has a progress bar to block GUI while searching database.

* Add species codes TOC in help

* Documented new species search in help

* Nilus Checker

Can check a Nilus class to see if it's missing required objects and be
used to remove empty fields (e.g. zero length strings) from an object.

* fixed anchor html problem

* Messing around with checking of required fields in nilus objects.

* split Tethys help files into smaller chunks

* Update button enablers

And reinstate output of a single deployment document, with non-recording
periods stores in the QA section

And update help TOC for latest help documents.

---------

Co-authored-by: Marie <marie.roch@sdsu.edu>
2024-01-30 14:57:38 +00:00
Douglas Gillespie
82e02a21b3
Merge pull request #63 from PAMGuard/main
MErge from main
2024-01-30 14:56:43 +00:00
Douglas Gillespie
c4192a7323 Version 2.02.10
final commit of updated version info for release
2024-01-30 14:51:29 +00:00
Douglas Gillespie
5466914d4e
Merge from dev branch (#125)
* updating Tethys help

* added help details server connection & calibration

* Reporting outputs to user

Use Pamguard WarnOnce system to show a message of success or failure
after attempting to output to Tethys.

* Removing empty fields

Start of implementation of code that can remove empty fields from
objects before they are written.

* More help documentation

Continued writing general export help.
Added new css style
Added image

* Fix type in Deployment export

* Prevent single deployment export

For now, disable the option to export a single Deployment document for
multiple recording periods.

* System to search species codes

Search the ITIS species codes in Tethys to find ITIS codes. Search can
be on a common or scientific name.

* Data blocks help + species codes

More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs.  Includes supporting images

* Improved dialog for finding species codes

Now has a progress bar to block GUI while searching database.

* Add species codes TOC in help

* Documented new species search in help

* Nilus Checker

Can check a Nilus class to see if it's missing required objects and be
used to remove empty fields (e.g. zero length strings) from an object.

* fixed anchor html problem

* Messing around with checking of required fields in nilus objects.

* split Tethys help files into smaller chunks

* Update button enablers

And reinstate output of a single deployment document, with non-recording
periods stores in the QA section

And update help TOC for latest help documents.

---------

Co-authored-by: Marie <marie.roch@sdsu.edu>
2024-01-30 11:55:34 +00:00
Douglas Gillespie
8b57a3982a
Merge pull request #62 from PAMGuard/main
Update README.html
2024-01-30 11:54:17 +00:00
Douglas Gillespie
f4993425b5
Merge pull request #61 from douggillespie/Tethys
TethysMerge in from Tetthys
2024-01-30 11:52:32 +00:00
Douglas Gillespie
cb0d191c08 Update README.html
Fix problems of weird characters in readme.html
2024-01-29 20:50:07 +00:00
Douglas Gillespie
6b1845293c Update button enablers
And reinstate output of a single deployment document, with non-recording
periods stores in the QA section

And update help TOC for latest help documents.
2024-01-29 16:54:24 +00:00
Marie
810ec67077 split Tethys help files into smaller chunks 2024-01-26 19:56:45 -08:00
Douglas Gillespie
dacfab07f5
Merge pull request #60 from PAMGuard/main
Correct sorting of input sound files
2024-01-26 10:02:00 +00:00