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Merge branch 'deep_learning' of https://github.com/macster110/PAMGuard into deep_learning

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This commit is contained in:
Jamie Mac 2024-02-26 14:35:24 +00:00
commit ea0be6ae9c
18 changed files with 382 additions and 142 deletions
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4
pom.xml
View File

@ -389,7 +389,7 @@
<dependency>
<groupId>net.synedra</groupId>
<artifactId>validatorfx</artifactId>
<version>0.4.0</version>
<version>0.4.2</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-compress -->
@ -445,7 +445,7 @@
<dependency>
<groupId>org.controlsfx</groupId>
<artifactId>controlsfx</artifactId>
<version>11.0.0</version>
<version>11.2.0</version>
<exclusions>
<exclusion>
<groupId>org.openjfx</groupId>

2
src/Acquisition/layoutFX/AcquisitionPaneFX.java
View File

@ -290,7 +290,7 @@ public class AcquisitionPaneFX extends SettingsPane<AcquisitionParameters>{
//custom pane for each aquisition system.
systemPane=new PamBorderPane();
offlineDAQPaneFX= new OfflineDAQPane(acquisitionControl, this);
offlineDAQPaneFX= new OfflineDAQPane(acquisitionControl);
//the main pane is for reference only in viewer mode.
Pane samplingPane=createSamplingPane();

3
src/Acquisition/layoutFX/OfflineDAQPane.java
View File

@ -30,8 +30,7 @@ public class OfflineDAQPane extends SettingsPane<OfflineFileParameters>{
private PamBorderPane mainPane;
public OfflineDAQPane(OfflineFileDataStore acquisitionControl,
AcquisitionPaneFX acquisitionPaneFX){
public OfflineDAQPane(OfflineFileDataStore acquisitionControl){
super(null);
this.mainPane= new PamBorderPane();
mainPane.setCenter(createOfflinePane());

2
src/Array/layoutFX/Array3DPane.java
View File

@ -408,7 +408,7 @@ public class Array3DPane extends PamBorderPane {
newPoint =new Point3D(streamer.getCoordinate(0)*scaleFactor, -streamer.getCoordinate(2)*scaleFactor, streamer.getCoordinate(1)*scaleFactor);
streamerPoints.add(newPoint);
System.out.println("Streamer points: " + streamerPoints.size());
//System.out.println("Streamer points: " + streamerPoints.size());
PolyLine3D polyLine3D=new PolyLine3D(streamerPoints, 4f, Color.DODGERBLUE);
arrayGroup.getChildren().add(polyLine3D);

2
src/PamController/PamguardVersionInfo.java
View File

@ -31,7 +31,7 @@ public class PamguardVersionInfo {
* Version number, major version.minorversion.sub-release.
* Note: can't go higher than sub-release 'f'
*/
static public final String version = "2.02.09c";
static public final String version = "2.02.11";
/**
* Release date

4
src/Resources/css/primer-pamguard-dark.css
View File

@ -293,4 +293,6 @@
.tree-table-view:focused > .virtual-flow > .clipped-container > .sheet > .tree-table-row-cell:filled:selected {
-color-cell-fg: -color-cell-fg-selected;
-fx-background-color: -color-cell-border, -color-cell-bg-selected;
}
}

25
src/Resources/css/primer-pamguard.css
View File

@ -130,13 +130,14 @@
-fx-border-color: -fx-highlight;
}
*/
/**
* Button for closing a hiding panel. Right indicates bottoms points towards the right, closing a hiding panel
* on the right hand side of the screen. These buttons have a transparent background and rounded corners.
*/
/** top-left, top-right, bottom-right, and bottom-left corners, in that order. */
.close-button-right{
-fx-background-color: transparent;
-fx-background-color: -fx-darkbackground-trans;
-fx-background-radius: 0 10 10 0;
-fx-border-color: transparent;
-fx-border-radius: 0 10 10 0;
@ -144,7 +145,7 @@
.close-button-left{
-fx-background-color: transparent;
-fx-background-color: -fx-darkbackground-trans;
-fx-background-radius: 10 0 0 10;
-fx-border-color: transparent;
-fx-border-radius: 10 0 0 10;
@ -152,21 +153,22 @@
.close-button-top{
-fx-background-color: transparent;
-fx-background-color: -fx-darkbackground-trans;
-fx-background-radius: 10 10 0 0;
-fx-border-color: transparent;
-fx-border-color: transparent;
-fx-border-radius: 10 10 0 0;
}
.close-button-bottom{
-fx-background-color: transparent;
-fx-background-color: -fx-darkbackground-trans;
-fx-background-radius: 0 0 10 10;
-fx-border-color: transparent;
-fx-border-color: transparent;
-fx-border-radius: 0 0 10 10;
}
.close-button-bottom-trans{
-fx-border-color: transparent;
-fx-background-color: transparent;
@ -329,8 +331,6 @@
* Spinner *
* *
*********************************************/
.spinner {
-fx-pref-width: 120px;
}
@ -416,6 +416,13 @@
-fx-background-color: -fx-highlight_border_settings;
}
/*******************************************************************************
* *
* Dialog *
* *
******************************************************************************/
.dialog-pane > .content {
-fx-padding: 0,0,0,0;
}

2
src/dataModelFX/connectionNodes/ModuleIconFactory.java
View File

@ -132,7 +132,7 @@ public class ModuleIconFactory {
long time2 = System.currentTimeMillis();
System.out.println("GET MODULE ICON: " + icon + " load time: " + (time2-time1));
//System.out.println("GET MODULE ICON: " + icon + " load time: " + (time2-time1));
return iconNode;
};

8
src/decimator/DecimatorControl.java
View File

@ -290,5 +290,13 @@ public class DecimatorControl extends PamControlledUnit implements PamSettings,
}
/**
* Get the decimator process.
* @return the decimator process.
*/
public DecimatorProcessW getDecimatorProcess() {
return this.decimatorProcess;
}
}

2
src/decimator/DecimatorParams.java
View File

@ -85,7 +85,7 @@ public class DecimatorParams implements Serializable, Cloneable, ManagedParamete
* @see java.lang.Object#clone()
*/
@Override
protected DecimatorParams clone() {
public DecimatorParams clone() {
try {
DecimatorParams dp = (DecimatorParams) super.clone();
dp.filterParams = filterParams.clone();

324
src/decimator/layoutFX/DecimatorSettingsPane.java
View File

@ -1,57 +1,106 @@
package decimator.layoutFX;
import java.awt.GridBagConstraints;
import org.controlsfx.control.PopOver;
import Acquisition.layoutFX.OfflineDAQPane;
import Filters.FilterBand;
import Filters.FilterParams;
import Filters.FilterType;
import PamController.PamController;
import PamController.SettingsPane;
import PamDetection.RawDataUnit;
import PamView.dialog.PamGridBagContraints;
import PamView.dialog.warn.WarnOnce;
import PamguardMVC.PamDataBlock;
import PamguardMVC.PamRawDataBlock;
import dataMap.filemaps.OfflineFileParameters;
import decimator.DecimatorControl;
import decimator.DecimatorParams;
import javafx.scene.Node;
import javafx.scene.control.ComboBox;
import javafx.scene.control.Label;
import javafx.scene.control.Tab;
import javafx.scene.control.TabPane;
import javafx.scene.control.TextField;
import javafx.scene.layout.Pane;
import javafx.scene.layout.Region;
import pamViewFX.PamGuiManagerFX;
import pamViewFX.fxNodes.PamBorderPane;
import pamViewFX.fxNodes.PamButton;
import pamViewFX.fxNodes.PamGridPane;
import pamViewFX.fxNodes.PamVBox;
import pamViewFX.fxNodes.pamDialogFX.PamDialogFX;
import pamViewFX.fxNodes.utilityPanes.FilterPaneFX;
import pamViewFX.fxNodes.utilityPanes.SourcePaneFX;
import pamViewFX.fxStyles.PamStylesManagerFX;
/**
*
* Settings for the decimator.
*
* @author Jamie Macaulay
* @author Jamie Macaulay
* @author Dougals Gillespie
*
*/
public class DecimatorSettingsPane extends SettingsPane<DecimatorParams> {
private DecimatorParams decimatorParams;
private PamBorderPane mainPane;
/**
* Reference to the decimator control.
*/
private DecimatorControl decimatorControl;
/**
* Allows users to slect the input source.
*/
private SourcePaneFX sourcePanel;
/**
* Shows the sample rate of the source
*/
private Label sourceSampleRate;
private float inputSampleRate;
private TextField newSampleRate;
private PamButton filterButton;
private PamButton defaultFilterButton;
private Label filterInfo;
private FilterPaneFX filterPaneFX;
private ComboBox<String> interpolator;
private boolean isViewer;
private OfflineDAQPane offlineDAQPaneFX;
public DecimatorSettingsPane(DecimatorControl aquisitionControl) {
super(null);
mainPane= new PamBorderPane();
this.decimatorControl = aquisitionControl;
mainPane.setCenter(new Label("Hello Decimator Pane"));
mainPane.setCenter(createPane() );
}
private Pane createPane() {
private Region createPane() {
PamVBox mainPanel = new PamVBox();
PamVBox holder = new PamVBox();
holder.setSpacing(5);
GridBagConstraints constraints = new PamGridBagContraints();
// insets = new Insets(2,2,2,2);
// insets = new Insets(2,2,2,2);
Label srcLabel = new Label("Decimator settings");
PamGuiManagerFX.titleFont2style(srcLabel);
holder.getChildren().add(srcLabel);
sourcePanel = new SourcePaneFX( RawDataUnit.class, true, true);
sourcePanel.addSelectionListener((obsval, oldVal, newVal)->{
@ -59,86 +108,253 @@ public class DecimatorSettingsPane extends SettingsPane<DecimatorParams> {
});
// sourcePanel.addSourcePanelMonitor(new SPMonitor());
mainPanel.getChildren().add(sourcePanel.getPane());
holder.getChildren().addAll(sourcePanel);
PamGridPane decimatorPanel = new PamGridPane();
PamGridPane decimatorPane = new PamGridPane();
//Decimator Settings
Label label = new Label("Decimator settings");
PamGuiManagerFX.titleFont2style(label);
holder.getChildren().add(label);
int gridx = 0;
int gridy = 0;
decimatorPanel.add(new Label("Source sample rate "), gridx, gridy);
decimatorPane.add(new Label("Source sample rate "), gridx, gridy);
gridx++;
decimatorPanel.add(sourceSampleRate = new Label(" - Hz"), gridx, gridy);
decimatorPane.add(sourceSampleRate = new Label(" - Hz"), gridx, gridy);
gridx = 0;
gridy ++;
// decimatorPanel.add(new JLabel("Output sample rate "), gridx, gridy);
// gridx ++;
// decimatorPanel.add(newSampleRate = new TextField(), gridx, gridy);
// gridx ++;
// decimatorPanel.add(new JLabel(" Hz"), gridx, gridy);
// gridy ++;
// gridx = 0;
decimatorPane.add(new Label("Output sample rate "), gridx, gridy);
gridx ++;
decimatorPane.add(newSampleRate = new TextField(), gridx, gridy);
gridx ++;
decimatorPane.add(new Label(" Hz"), gridx, gridy);
gridy ++;
gridx = 0;
// gridwidth = 1;
// decimatorPanel.add(filterButton = new PamButton("Filter settings"), gridx, gridy);
filterPaneFX = new FilterPaneFX();
decimatorPane.add(filterButton = new PamButton("Filter settings"), gridx, gridy);
filterButton.setOnAction((action)->{
selectFilters(filterButton);
});
// filterButton.addActionListener(new FilterButton());
// gridx = 1;
gridx = 1;
// gridwidth = 2;
// addComponent(decimatorPanel, defaultFilterButton = new PamButton("Default Filter"), gridx, gridy);
// defaultFilterButton.addActionListener(new DefaultFilterButton());
// gridx = 0;
// gridwidth = 3;
// gridy++;
// addComponent(decimatorPanel, filterInfo = new JLabel("Filter: "), gridx, gridy);
// gridx = 0;
decimatorPane.add(defaultFilterButton = new PamButton("Default Filter"), gridx, gridy);
defaultFilterButton.setOnAction((action)->{
restoreDefaultSettings();
});
gridx = 0;
gridy++;
decimatorPane.add(filterInfo = new Label("Filter: "), gridx, gridy);
PamGridPane.setColumnSpan(filterInfo, 3);
gridx = 0;
// gridwidth = 1;
// gridy++;
// addComponent(decimatorPanel, new JLabel("Interpolation: ", JLabel.RIGHT), gridx, gridy);
gridy++;
Label interpLabel = new Label("Interpolation: ");
decimatorPane.add(interpLabel, gridx, gridy);
gridx++;
// gridx += gridwidth;
// gridwidth = 2;
// addComponent(decimatorPanel, interpolator = new JComboBox<String>(), gridx, gridy);
// interpolator.addItem("None");
// interpolator.addItem("Linear");
// interpolator.addItem("Quadratic");
decimatorPane.add(interpolator = new ComboBox<String>(), gridx, gridy);
interpolator.getItems().add("None");
interpolator.getItems().add("Linear");
interpolator.getItems().add("Quadratic");
holder.getChildren().add(decimatorPane);
//
// isViewer = PamController.getInstance().getRunMode() == PamController.RUN_PAMVIEW;
// if (isViewer) {
// JTabbedPane tabbedPane = new JTabbedPane();
// offlineDAQDialogPanel = new OfflineFileDialogPanel(decimatorControl, this);
// tabbedPane.add("Offline Files", offlineDAQDialogPanel.getComponent());
// tabbedPane.add("Runtime Settings", mainPanel);
// setDialogComponent(tabbedPane);
// }
// else {
// setDialogComponent(mainPanel);
// }
isViewer = PamController.getInstance().getRunMode() == PamController.RUN_PAMVIEW;
Region mainPane;
if (isViewer) {
TabPane tabbedPane = new TabPane();
offlineDAQPaneFX= new OfflineDAQPane(decimatorControl);
tabbedPane.getTabs().add(new Tab("Offline Files",offlineDAQPaneFX.getContentNode()));
tabbedPane.getTabs().add(new Tab("Decimator Settings", holder));
mainPane = tabbedPane;
}
else {
mainPane = holder;
}
//
// setHelpPoint("sound_processing.decimatorHelp.docs.decimator_decimator");
// filterButton.setToolTipText("Manual adjustment of filter settings");
// defaultFilterButton.setToolTipText("Set a default filter (6th order Butterworth low pass at Decimator Nyquist frequency)");
// interpolator.setToolTipText("If Decimation / upsampling is not by an integer value, you should use interpolation to improve waveform reconstruction");
return mainPanel;
return mainPane;
}
private void selectFilters(PamButton button) {
float filtSampleRate = Math.max(inputSampleRate, getOutputSampleRate());
PopOver popOver = new PopOver();
popOver.setContentNode(filterPaneFX.getContentNode());
filterPaneFX.setParams(decimatorParams.filterParams);
filterPaneFX.setSampleRate(filtSampleRate);
popOver.setOnHidden((e)->{
if (decimatorParams.filterParams==null) {
restoreDefaultSettings();
}
FilterParams newFP = filterPaneFX.getParams(decimatorParams.filterParams);
if (newFP != null) {
decimatorParams.filterParams = newFP.clone();
}
sayFilter();
});
popOver.show(button);
}
/**
* display filter information
*/
private void sayFilter() {
if (decimatorParams == null || decimatorParams.filterParams == null) {
filterInfo.setText("No filter");
}
else {
filterInfo.setText("Filter: " + decimatorParams.filterParams.toString());
}
}
private float getOutputSampleRate() {
try {
float fs = Float.valueOf(newSampleRate.getText());
return fs;
}
catch (NumberFormatException e) {
return inputSampleRate;
}
}
public void restoreDefaultSettings() {
/*
* does not set the output sample rate, but does set sensible values for the
* filter.
*/
float newFS = 0;
try {
newFS = java.lang.Float.valueOf(newSampleRate.getText());
}
catch (NumberFormatException e) {
}
PamDataBlock sourceblock = sourcePanel.getSource();
if (sourceblock.getSampleRate() > 0) {
newFS = Math.min(newFS, sourceblock.getSampleRate());
}
if (newFS <= 0) {
PamDialogFX.showWarning("Invalid output samplerate : " + newSampleRate.getText());
return;
}
decimatorParams.filterParams.lowPassFreq = newFS/2;
decimatorParams.filterParams.filterType = FilterType.BUTTERWORTH;
decimatorParams.filterParams.filterOrder = 6;
decimatorParams.filterParams.filterBand = FilterBand.LOWPASS;
sayFilter();
}
@Override
public DecimatorParams getParams(DecimatorParams currParams) {
// TODO Auto-generated method stub
return null;
try {
// ArrayList<PamDataBlock> rawBlocks = PamController.getInstance().getRawDataBlocks();
decimatorParams.rawDataSource = sourcePanel.getSource().getDataName();
decimatorParams.channelMap = sourcePanel.getChannelList();
decimatorParams.newSampleRate = java.lang.Float.valueOf(newSampleRate.getText());
}
catch (Exception Ex) {
PamDialogFX.showWarning("There is an unknown error - get in touch with PMAGuard support. ");
return null;
}
if (decimatorParams.rawDataSource == null) {
PamDialogFX.showWarning("You must select a raw data source");
return null;
}
if (decimatorParams.channelMap == 0) {
PamDialogFX.showWarning("You must select at least one channel for decimation");
return null;
}
if (offlineDAQPaneFX != null) {
OfflineFileParameters ofp = offlineDAQPaneFX.getParams();
if (ofp == null) {
return null;
}
decimatorControl.getOfflineFileServer().setOfflineFileParameters(ofp);
}
decimatorParams.interpolation = interpolator.getSelectionModel().getSelectedIndex();
boolean isInt = decimatorControl.isIntegerDecimation(sourcePanel.getSource().getSampleRate(), decimatorParams.newSampleRate);
if (isInt && decimatorParams.interpolation > 0) {
int ans = WarnOnce.showWarning("Decimator", "With in / out sample rate ratio equal to a whole number, there is no need to interpolate", WarnOnce.OK_CANCEL_OPTION);
if (ans == WarnOnce.CANCEL_OPTION) {
return null;
}
else {
decimatorParams.interpolation = 0;
}
}
if (!isInt && decimatorParams.interpolation == 0) {
int ans = WarnOnce.showWarning("Decimator", "With in / out sample rate ratio NOT equal to a whole number, it is recommended that you use linear or quadratic interpolation",
WarnOnce.OK_CANCEL_OPTION);
if (ans == WarnOnce.CANCEL_OPTION) {
return null;
}
else {
// decimatorParams.interpolation = 0;
}
}
return decimatorParams;
}
@Override
public void setParams(DecimatorParams input) {
// TODO Auto-generated method stub
this.decimatorParams = input.clone();
sourcePanel.excludeDataBlock(decimatorControl.getDecimatorProcess().getOutputDataBlock(0), true);
sourcePanel.setSourceList();
PamRawDataBlock currentBlock = PamController.getInstance().getRawDataBlock(decimatorParams.rawDataSource);
sourcePanel.setSource(currentBlock);
sourcePanel.setChannelList(decimatorParams.channelMap);
newSampleRate.setText(String.format("%.1f", decimatorParams.newSampleRate));
newDataSource();
if (offlineDAQPaneFX != null) {
offlineDAQPaneFX.setParams(decimatorControl.getOfflineFileServer().getOfflineFileParameters());
}
interpolator.getSelectionModel().select(decimatorParams.interpolation);
sayFilter();
}
@Override
public String getName() {
// TODO Auto-generated method stub
return null;
return "Decimator Settings";
}
@Override

7
src/pamViewFX/PamGuiFX.java
View File

@ -174,7 +174,7 @@ public class PamGuiFX extends StackPane implements PamViewInterface {
// showButtonRight.setGraphic(PamGlyphDude.createPamGlyph(FontAwesomeIcon.CHEVRON_LEFT, PamGuiManagerFX.iconColor, PamGuiManagerFX.iconSize));
showButtonRight.setGraphic(PamGlyphDude.createPamIcon("mdi2c-chevron-left", PamGuiManagerFX.iconColor, PamGuiManagerFX.iconSize));
//showLeftButton.setText(PamFontAwesome.ICON_CHEVRON_LEFT);
showButtonRight.getStyleClass().add("close-button-left");
showButtonRight.getStyleClass().add("close-button-left-trans");
showButtonRight.setStyle("-fx-background-radius: 0 0 0 0;");
//alter animations to remove/add showButton to tab pane.
@ -199,8 +199,8 @@ public class PamGuiFX extends StackPane implements PamViewInterface {
});
PamButton closeButtonLeft=hidingSidePane.getHideButton();
closeButtonLeft.getStyleClass().add("close-button-right-trans");
// closeButtonLeft.setGraphic(PamGlyphDude.createPamGlyph(FontAwesomeIcon.CHEVRON_RIGHT, Color.DARKGRAY.darker(), PamGuiManagerFX.iconSize));
closeButtonLeft.setGraphic(PamGlyphDude.createPamIcon("mdi2c-chevron-right", Color.DARKGRAY.darker(), PamGuiManagerFX.iconSize));
closeButtonLeft.prefHeightProperty().bind(mainTabPane.getHeaderHeightProperty());
//add hiding pane to main pane.
@ -217,7 +217,7 @@ public class PamGuiFX extends StackPane implements PamViewInterface {
PamButton showButtonLeft=hidingPaneLeft.getShowButton();
// showButtonLeft.setGraphic(PamGlyphDude.createPamGlyph(FontAwesomeIcon.BARS, Color.LIGHTGRAY, PamGuiManagerFX.iconSize));
showButtonLeft.setGraphic(PamGlyphDude.createPamIcon("mdi2m-menu", Color.LIGHTGRAY, PamGuiManagerFX.iconSize));
showButtonLeft.getStyleClass().add("close-button-right");
showButtonLeft.getStyleClass().add("close-button-right-trans");
showButtonLeft.setStyle(" -fx-background-radius: 0 0 0 0;");
PamButton closeRightButton=hidingPaneLeft.getHideButton();
@ -546,6 +546,7 @@ public class PamGuiFX extends StackPane implements PamViewInterface {
this.setRight(rightHBox);
this.setPrefHeight(prefHeight);
this.getStyleClass().add("pane-opaque");
//this.setPadding(new Insets(0,0,0,0));

4
src/pamViewFX/fxNodes/utilityPanes/FilterPaneFX.java
View File

@ -466,7 +466,7 @@ public class FilterPaneFX extends SettingsPane<FilterParams> {
public void changed(ObservableValue<? extends Number> observable,
Number oldValue, Number newValue) {
if (axisInitialised) {
updateBodeGraph();
if (filterMethod!=null) updateBodeGraph();
axisInitialised=false;
}
}
@ -689,6 +689,8 @@ public class FilterPaneFX extends SettingsPane<FilterParams> {
* @return a data series to add to the line chart
*/
private Series<Number, Number> createFilterPoints(ValueAxis<Number> axis){
if (filterMethod==null) return null;
Series<Number, Number> series = new Series<Number, Number>();
/*

40
src/pamViewFX/fxNodes/utilityPanes/GroupedSourcePaneFX.java
View File

@ -12,12 +12,10 @@ import javafx.scene.control.ToggleGroup;
import javafx.scene.layout.GridPane;
import javafx.scene.layout.Pane;
import javafx.scene.layout.Priority;
import net.synedra.validatorfx.Validator;
import pamViewFX.PamGuiManagerFX;
import pamViewFX.fxNodes.PamGridPane;
import pamViewFX.fxNodes.PamHBox;
import pamViewFX.fxNodes.PamVBox;
import pamViewFX.validator.PamValidator;
import PamUtils.PamUtils;
import PamView.GroupedSourceParameters;
import PamguardMVC.PamConstants;
@ -29,6 +27,7 @@ import PamguardMVC.PamDataBlock;
* @author Jamie Macaulay
*
*/
@SuppressWarnings("rawtypes")
public class GroupedSourcePaneFX extends SourcePaneFX {
@ -59,11 +58,6 @@ public class GroupedSourcePaneFX extends SourcePaneFX {
*/
private PamVBox channelPanel;
/**
* Validator for channels
*/
private Validator channelValidator;
public GroupedSourcePaneFX(Class sourceType, boolean hasChannels, boolean includeSubClasses, boolean autoGrouping) {
super(sourceType, hasChannels, includeSubClasses);
@ -76,9 +70,7 @@ public class GroupedSourcePaneFX extends SourcePaneFX {
@Override
protected void createPanel() {
channelValidator = new PamValidator();
sourcePane=new PamGridPane();
sourcePane.setVgap(5);
sourcePane.setHgap(5);
@ -197,34 +189,6 @@ public class GroupedSourcePaneFX extends SourcePaneFX {
}
/**
* Get the validator for the channel. This can identify errors
* in
* @return
*/
public Validator getChannelValidator() {
return channelValidator;
}
/**
* Check if
* @return
*/
private boolean isAChannelSelected() {
int channels = 0;
PamDataBlock sb = getSource();
if (sb != null) {
// channels = sb.getChannelMap();
channels = sb.getSequenceMap();
}
int n=0;
//remove all channels from vertical box pane.
for (int i = 0; i < Math.min(PamConstants.MAX_CHANNELS, channelBoxes.length); i++) {
if ((channels & 1<<i) != 0 && this.channelBoxes[i].isSelected()) n++;
}
if (n==0) return false;
else return true;
}
@Override
protected void showChannels() {

20
src/pamViewFX/fxNodes/utilityPanes/SettingsDialog.java
View File

@ -5,7 +5,6 @@ import javafx.stage.StageStyle;
import pamViewFX.PamGuiManagerFX;
import pamViewFX.fxNodes.pamDialogFX.PamDialogFX;
import pamViewFX.fxStyles.PamStylesManagerFX;
import PamController.PamController;
import PamController.SettingsPane;
/**
@ -22,23 +21,22 @@ public class SettingsDialog<T> extends PamDialogFX<T>{
public SettingsDialog(SettingsPane<T> settingsPane){
super(PamGuiManagerFX.getInstance().getPrimaryStage() /*TODO - add stage*/, settingsPane.getName(), StageStyle.DECORATED);
this.getDialogPane().getStylesheets().addAll(PamStylesManagerFX.getPamStylesManagerFX().getCurStyle().getDialogCSS());
this.setResizable(true);
this.settingsPane=settingsPane;
this.setContent(settingsPane.getContentNode());
// this.getDialogPane().getStylesheets().add(PamController.getInstance().getGuiManagerFX().getPamSettingsCSS());
Stage stage = (Stage) this.getDialogPane().getScene().getWindow();
stage.toFront();
// //set results converter
// this.setResultConverter(dialogButton -> {
// if (dialogButton == ButtonType.OK) {
// T params = getParams();
// if (params!=null) pamControlledUnit.setParams(params);
// }
// return null;
// });
this.getDialogPane().getStylesheets().addAll(PamStylesManagerFX.getPamStylesManagerFX().getCurStyle().getDialogCSS());
// System.out.println("SettingsPane: DIALOG " + this.getDialogPane().getStylesheets().size());
// for (int i=0;i<this.getDialogPane().getStylesheets().size();i++) {
// System.out.println(this.getDialogPane().getStylesheets().get(i));
// }
}
@Override

69
src/pamViewFX/fxNodes/utilityPanes/SourcePaneFX.java
View File

@ -15,14 +15,13 @@ import javafx.scene.control.ComboBox;
import javafx.scene.control.Label;
import javafx.scene.control.Tooltip;
import javafx.scene.layout.HBox;
import javafx.scene.layout.Pane;
import javafx.scene.layout.Priority;
import javafx.scene.text.Font;
import javafx.stage.Window;
import pamViewFX.PamGuiManagerFX;
import pamViewFX.fxNodes.PamBorderPane;
import pamViewFX.fxNodes.PamVBox;
import pamViewFX.fxNodes.pamDialogFX.PamDialogFX2AWT;
import pamViewFX.validator.PamValidator;
import PamController.PamController;
import PamController.PamGUIManager;
import PamDetection.LocalisationInfo;
@ -43,7 +42,6 @@ import PamguardMVC.PamDataBlock;
@SuppressWarnings("rawtypes")
public class SourcePaneFX extends PamBorderPane {
private PamBorderPane panel;
private ArrayList<SourceSelection> sourceType = new ArrayList<>();
private boolean hasChannels;
private String borderTitle;
@ -85,6 +83,11 @@ public class SourcePaneFX extends PamBorderPane {
*/
private Label titleLabel;
/**
* Validator for channels
*/
protected PamValidator channelValidator;
/**
* Construct a panel with a titles border
* @param borderTitle Title to go in border
@ -96,6 +99,7 @@ public class SourcePaneFX extends PamBorderPane {
if (sourceType != null) {
this.sourceType.add(new SourceSelection(sourceType, includeSubClasses));
}
channelValidator = new PamValidator();
this.setHasChannels(hasChannels);
this.setBorderTitle(borderTitle);
createPanel();
@ -110,6 +114,7 @@ public class SourcePaneFX extends PamBorderPane {
*/
public SourcePaneFX(Class sourceType, boolean hasChannels, boolean includeSubClasses) {
this.sourceType.add(new SourceSelection(sourceType, includeSubClasses));
channelValidator = new PamValidator();
this.setHasChannels(hasChannels);
createPanel();
setSourceList();
@ -148,6 +153,7 @@ public class SourcePaneFX extends PamBorderPane {
* Add a listener to the data source drop down list
* @param listener listener
*/
@SuppressWarnings("unchecked")
public void addSelectionListener(ChangeListener listener) {
sourceList.valueProperty().addListener(listener);
}
@ -159,7 +165,7 @@ public class SourcePaneFX extends PamBorderPane {
protected void createPanel() {
PamVBox comboBoxPane=new PamVBox();
comboBoxPane.setSpacing(5);
@ -192,8 +198,11 @@ public class SourcePaneFX extends PamBorderPane {
channelPanel.getChildren().add(selectAll =new CheckBox("All"));
channelBoxes =new CheckBox[PamConstants.MAX_CHANNELS];
selectAll.setOnAction((action)->{
System.out.println("Stylesheets: 0: " + getStylesheets().size());
if (selectAll.isSelected()) selectAllChannels();
else selectNoChannels();
channelValidator.validate(); //makes sure any error signs are removed.
System.out.println("Stylesheets: 1: " + getStylesheets().size());
});
}
@ -205,10 +214,21 @@ public class SourcePaneFX extends PamBorderPane {
if (isHasChannels()){
for (int i = 0; i < PamConstants.MAX_CHANNELS; i++){
channelBoxes[i] = new CheckBox("Channel " + i);
channelValidator.createCheck()
.dependsOn(("channel_" + i + "_" + this), channelBoxes[i].selectedProperty())
.withMethod(c -> {
if (!isAChannelSelected() ) {
c.error("At least one channel needs to be selected for the module to work");
}
})
.decorates(channelBoxes[i])
.immediate();
//channelPanel.getChildren().add(channelBoxes[i]);
final int n=i;
channelBoxes[i].setOnAction((action)->{
selectionChanged(n);
channelValidator.validate(); //makes sure any error signs are removed.
});
//System.out.println("SourcePanel.java creatPanel"+i);
}
@ -221,6 +241,27 @@ public class SourcePaneFX extends PamBorderPane {
}
/**
* Check if a single channel is selected.
* @return true if at least one channel is selected.
*/
public boolean isAChannelSelected() {
int channels = 0;
PamDataBlock sb = getSource();
if (sb != null) {
// channels = sb.getChannelMap();
channels = sb.getSequenceMap();
}
int n=0;
//remove all channels from vertical box pane.
for (int i = 0; i < Math.min(PamConstants.MAX_CHANNELS, channelBoxes.length); i++) {
if ((channels & 1<<i) != 0 && this.channelBoxes[i].isSelected()) n++;
}
if (n==0) return false;
else return true;
}
protected void selectNoChannels() {
for (int i = 0; i < channelBoxes.length; i++) {
if (channelBoxes[i] != null) {
@ -306,6 +347,7 @@ public class SourcePaneFX extends PamBorderPane {
private int currentNShown = 0;
private Class requiredClassType;
/**
* Repack the owner window if the number of channels has changed
* @param channelsMap bitmap of used channels.
@ -362,7 +404,6 @@ public class SourcePaneFX extends PamBorderPane {
// }
}
currentNShown = PamUtils.getNumChannels(channelsMap);
}
/**
@ -626,13 +667,6 @@ public class SourcePaneFX extends PamBorderPane {
return sourceList.getSelectionModel().getSelectedIndex();
}
/**
* Get a reference to the JPanel containing the controls
* @return JPanel container
*/
public Pane getPane() {
return panel;
}
/**
* Exclude specific data blocks from the source list. e.g. a process would normally not
@ -776,6 +810,15 @@ public class SourcePaneFX extends PamBorderPane {
*/
public ComboBox<PamDataBlock> getDataBlockBox() {
return this.sourceList;
}
/**
* Get the channel validator for the source pane.
* @return the channel validator
*/
public PamValidator getChannelValidator() {
return channelValidator;
}
}

1
src/pamViewFX/fxStyles/PamAtlantaStyle.java
View File

@ -101,6 +101,7 @@ public class PamAtlantaStyle extends PamDefaultStyle {
cssStyles.add(getClass().getResource(primerdark).toExternalForm());
}
cssStyles.add(getClass().getResource(primerPAMGuard).toExternalForm());
cssStyles.add(getClass().getResource(primerPAMGuardDark).toExternalForm());
return cssStyles;
}

5
src/pamguard/PamguardFX.java
View File

@ -67,9 +67,8 @@ public class PamguardFX extends Application {
public void start(Stage primaryStage) throws Exception {
//this is called from launch(args)
try {
PamController.create(runMode, primaryStage);
System.out.println("javafx.runtime.version: " + System.getProperty("javafx.runtime.version"));
PamController.create(runMode, primaryStage);
}
catch (Exception e) {
e.printStackTrace();