Commit Graph

623 Commits

Author SHA1 Message Date
Douglas Gillespie
156952bafe Update MHTClickTrainAlgorithm.java
Synchronize calls into MHT Algorithm across threads (can mess up during restarts otherwise)
2024-02-22 17:40:45 +00:00
Douglas Gillespie
e491028ef7
Merge pull request #66 from PAMGuard/main
merge from main
2024-02-15 16:52:29 +00:00
Douglas Gillespie
d2263bbba5 Functions for better restarting after buffer overflow. 2024-02-15 16:48:33 +00:00
Douglas Gillespie
21b4bc130d Hydrophone data loading
Change how hydrophone data are loaded in viewer. Don't load ALL data.
Load the loading period + some before the load period which will be one
minute of data PLUS an extra n*2 data before that extra minute where n
is the number of hydrophones.
2024-02-09 11:53:35 +00:00
Douglas Gillespie
e52701353a Fix data integrity bug
Fix of bug that 'fixed' event start and end times in database for linked
parent / child event tables. Error was caused by a mix up between
ParentID and ParentUID fields.
2024-02-05 13:34:15 +00:00
Douglas Gillespie
66b73c45e2 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main 2024-02-02 09:08:19 +00:00
Douglas Gillespie
0dc47fcb0b click display arrangement
Added options to NOT automatically rearrange all the windows in the
click display every time the display size changes
2024-02-02 09:07:55 +00:00
Douglas Gillespie
9609546602
Merge pull request #65 from douggillespie/Tethys
Tethys
2024-01-30 15:01:04 +00:00
Douglas Gillespie
67e5841668
Merge pull request #64 from PAMGuard/main
Merge from main
2024-01-30 15:00:00 +00:00
Douglas Gillespie
9fe8e35322
MErge from dg (#127)
* updating Tethys help

* added help details server connection & calibration

* Reporting outputs to user

Use Pamguard WarnOnce system to show a message of success or failure
after attempting to output to Tethys.

* Removing empty fields

Start of implementation of code that can remove empty fields from
objects before they are written.

* More help documentation

Continued writing general export help.
Added new css style
Added image

* Fix type in Deployment export

* Prevent single deployment export

For now, disable the option to export a single Deployment document for
multiple recording periods.

* System to search species codes

Search the ITIS species codes in Tethys to find ITIS codes. Search can
be on a common or scientific name.

* Data blocks help + species codes

More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs.  Includes supporting images

* Improved dialog for finding species codes

Now has a progress bar to block GUI while searching database.

* Add species codes TOC in help

* Documented new species search in help

* Nilus Checker

Can check a Nilus class to see if it's missing required objects and be
used to remove empty fields (e.g. zero length strings) from an object.

* fixed anchor html problem

* Messing around with checking of required fields in nilus objects.

* split Tethys help files into smaller chunks

* Update button enablers

And reinstate output of a single deployment document, with non-recording
periods stores in the QA section

And update help TOC for latest help documents.

---------

Co-authored-by: Marie <marie.roch@sdsu.edu>
2024-01-30 14:58:50 +00:00
Douglas Gillespie
1c532906ca
Merge from dg (#126)
* updating Tethys help

* added help details server connection & calibration

* Reporting outputs to user

Use Pamguard WarnOnce system to show a message of success or failure
after attempting to output to Tethys.

* Removing empty fields

Start of implementation of code that can remove empty fields from
objects before they are written.

* More help documentation

Continued writing general export help.
Added new css style
Added image

* Fix type in Deployment export

* Prevent single deployment export

For now, disable the option to export a single Deployment document for
multiple recording periods.

* System to search species codes

Search the ITIS species codes in Tethys to find ITIS codes. Search can
be on a common or scientific name.

* Data blocks help + species codes

More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs.  Includes supporting images

* Improved dialog for finding species codes

Now has a progress bar to block GUI while searching database.

* Add species codes TOC in help

* Documented new species search in help

* Nilus Checker

Can check a Nilus class to see if it's missing required objects and be
used to remove empty fields (e.g. zero length strings) from an object.

* fixed anchor html problem

* Messing around with checking of required fields in nilus objects.

* split Tethys help files into smaller chunks

* Update button enablers

And reinstate output of a single deployment document, with non-recording
periods stores in the QA section

And update help TOC for latest help documents.

---------

Co-authored-by: Marie <marie.roch@sdsu.edu>
2024-01-30 14:57:38 +00:00
Douglas Gillespie
82e02a21b3
Merge pull request #63 from PAMGuard/main
MErge from main
2024-01-30 14:56:43 +00:00
Douglas Gillespie
c4192a7323 Version 2.02.10
final commit of updated version info for release
2024-01-30 14:51:29 +00:00
Douglas Gillespie
5466914d4e
Merge from dev branch (#125)
* updating Tethys help

* added help details server connection & calibration

* Reporting outputs to user

Use Pamguard WarnOnce system to show a message of success or failure
after attempting to output to Tethys.

* Removing empty fields

Start of implementation of code that can remove empty fields from
objects before they are written.

* More help documentation

Continued writing general export help.
Added new css style
Added image

* Fix type in Deployment export

* Prevent single deployment export

For now, disable the option to export a single Deployment document for
multiple recording periods.

* System to search species codes

Search the ITIS species codes in Tethys to find ITIS codes. Search can
be on a common or scientific name.

* Data blocks help + species codes

More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs.  Includes supporting images

* Improved dialog for finding species codes

Now has a progress bar to block GUI while searching database.

* Add species codes TOC in help

* Documented new species search in help

* Nilus Checker

Can check a Nilus class to see if it's missing required objects and be
used to remove empty fields (e.g. zero length strings) from an object.

* fixed anchor html problem

* Messing around with checking of required fields in nilus objects.

* split Tethys help files into smaller chunks

* Update button enablers

And reinstate output of a single deployment document, with non-recording
periods stores in the QA section

And update help TOC for latest help documents.

---------

Co-authored-by: Marie <marie.roch@sdsu.edu>
2024-01-30 11:55:34 +00:00
Douglas Gillespie
8b57a3982a
Merge pull request #62 from PAMGuard/main
Update README.html
2024-01-30 11:54:17 +00:00
Douglas Gillespie
f4993425b5
Merge pull request #61 from douggillespie/Tethys
TethysMerge in from Tetthys
2024-01-30 11:52:32 +00:00
Douglas Gillespie
cb0d191c08 Update README.html
Fix problems of weird characters in readme.html
2024-01-29 20:50:07 +00:00
Douglas Gillespie
6b1845293c Update button enablers
And reinstate output of a single deployment document, with non-recording
periods stores in the QA section

And update help TOC for latest help documents.
2024-01-29 16:54:24 +00:00
Marie
810ec67077 split Tethys help files into smaller chunks 2024-01-26 19:56:45 -08:00
Douglas Gillespie
dacfab07f5
Merge pull request #60 from PAMGuard/main
Correct sorting of input sound files
2024-01-26 10:02:00 +00:00
Douglas Gillespie
53ca798f1b Correct sorting of input sound files 2024-01-26 09:57:57 +00:00
Douglas Gillespie
88be6ffe2e Messing around with checking of required fields in nilus objects. 2024-01-25 18:04:57 +00:00
Marie
fe33930ca8 fixed anchor html problem 2024-01-24 11:50:20 -08:00
Douglas Gillespie
fdfa9a20d8 Nilus Checker
Can check a Nilus class to see if it's missing required objects and be
used to remove empty fields (e.g. zero length strings) from an object.
2024-01-24 16:32:30 +00:00
Douglas Gillespie
b78bbe8b9e
Merge pull request #59 from douggillespie/main
merge from main
2024-01-24 14:50:22 +00:00
Douglas Gillespie
a6765d72b1
Merge pull request #58 from PAMGuard/main
Remove comments in split positioner
2024-01-24 14:46:39 +00:00
Douglas Gillespie
5fcd360737 Remove comments in split positioner 2024-01-24 14:46:05 +00:00
Douglas Gillespie
c0080ae4f4 Merge remote-tracking branch 'origin/main' into Tethys
Conflicts:
	src/help/JavaHelpSearch/DOCS
	src/help/JavaHelpSearch/DOCS.TAB
	src/help/JavaHelpSearch/OFFSETS
	src/help/JavaHelpSearch/POSITIONS
	src/help/JavaHelpSearch/SCHEMA
	src/help/JavaHelpSearch/TMAP
	src/help/utilities/tethys/docs/tethys_quickstart.html
2024-01-24 14:37:24 +00:00
Marie
f1bb6e4c0c Documented new species search in help 2024-01-23 14:33:50 -08:00
Douglas Gillespie
971165b72e Add species codes TOC in help 2024-01-23 11:12:54 +00:00
Douglas Gillespie
3d7224eb93 Improved dialog for finding species codes
Now has a progress bar to block GUI while searching database.
2024-01-22 18:04:57 +00:00
Marie
7d30b303e7 Data blocks help + species codes
More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs.  Includes supporting images
2024-01-21 15:24:13 -08:00
Douglas Gillespie
baff8d140c System to search species codes
Search the ITIS species codes in Tethys to find ITIS codes. Search can
be on a common or scientific name.
2024-01-21 21:35:34 +00:00
Douglas Gillespie
54cb0d1b08 Prevent single deployment export
For now, disable the option to export a single Deployment document for
multiple recording periods.
2024-01-21 17:01:10 +00:00
Douglas Gillespie
522253b489 Fix type in Deployment export 2024-01-21 16:25:03 +00:00
Marie
98bc7587b5 Merge branch 'Tethys' of https://github.com/douggillespie/PAMGuard into Tethys 2024-01-20 20:01:19 -08:00
Marie
c8bc943ff7 More help documentation
Continued writing general export help.
Added new css style
Added image
2024-01-20 20:01:05 -08:00
Douglas Gillespie
e0392de9c7 Removing empty fields
Start of implementation of code that can remove empty fields from
objects before they are written.
2024-01-19 17:29:12 +00:00
Douglas Gillespie
65300d719a Reporting outputs to user
Use Pamguard WarnOnce system to show a message of success or failure
after attempting to output to Tethys.
2024-01-19 16:29:41 +00:00
Marie
fa02c9826c Merge branch 'Tethys' of https://github.com/douggillespie/PAMGuard into Tethys 2024-01-18 19:37:29 -08:00
Marie
3f2e4239b0 added help details server connection & calibration 2024-01-18 19:37:17 -08:00
Douglas Gillespie
efdf17f651
Merge pull request #57 from PAMGuard/main
merge from main
2024-01-18 09:39:55 +00:00
Douglas Gillespie
e5fda7f72a
Merge branch 'main' into main 2024-01-18 09:39:45 +00:00
Douglas Gillespie
3ed9be4bfd Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into
main
2024-01-18 09:37:53 +00:00
Douglas Gillespie
42b7296075 Hide Tethys module
and remove text output in splitpanepositioner
2024-01-18 09:36:10 +00:00
Douglas Gillespie
02f1889e39 Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main
Conflicts:
	src/binaryFileStorage/BinaryStore.java
2024-01-18 09:33:26 +00:00
Douglas Gillespie
43811c1f9b
Merge from DG (#124)
* claspath update

* Batch processing

Adding functionality for offline task batch processing.
2024-01-18 09:31:00 +00:00
Douglas Gillespie
52bbff36e5
Merge pull request #56 from PAMGuard/main
Merge from main
2024-01-18 09:29:50 +00:00
Douglas Gillespie
0bc3968dc8 Fix err in binary store 2024-01-18 09:28:51 +00:00
Douglas Gillespie
0c035aa0fe Merge branch 'main' of https://github.com/douggillespie/PAMGuard 2024-01-17 21:28:02 +00:00