updated readme

This commit is contained in:
Douglas Gillespie 2023-05-26 10:28:54 +01:00
parent d350d5a765
commit af5d21df5f
3 changed files with 174 additions and 142 deletions

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@ -463,11 +463,22 @@ name="_Latest_Version_2.02.08"></a><span lang=EN-US>Latest Version 2.02.08 May
which mostly occurred when processing large datasets of many offline files, has
been fixed.</span></p>
<p class=MsoNormal><span lang=EN-US>Data Map: “Scroll To Data” pop-up menu,
which didnt always scroll to the correct place, is now fixed. </span></p>
<p class=MsoNormal><span lang=EN-US>Bearing Localiser offline: If reprocessing
bearings, the localizer was not correctly loading required raw or FFT data to
input to the cross correlation algorithm. This is now fixed so that you can
reprocess bearings in viewer mode. </span></p>
<p class=MsoNormal><span lang=EN-US>Map files: Added additional exception
handlers to handle corrupt map files. </span></p>
<h2><span lang=EN-US>New Features</span></h2>
<p class=MsoNormal><span lang=EN-US>Restart Options: When you restart
processing of offline files, if output data already exist (binary data of
within database tables) you will be asked if you want to overwrite the data, cancel,
processing of offline files, if output data already exist (binary data of within
database tables) you will be asked if you want to overwrite the data, cancel,
or try to continue from where to left off. </span></p>
<p class=MsoNormal><span lang=EN-US>Updated SoundTrap sud file interface so
@ -486,13 +497,12 @@ angle offsets applied to static hydrophones in viewer mode. This is now fixed. <
<p class=MsoNormal><span lang=EN-US>Click tool bar: Correctly shows event
selection options even if no species classification options are in place. </span></p>
<p class=MsoNormal><span lang=EN-US>Fixed Landmarks: Earlier versions were
losing these every time PAMGuard started or new data were loaded in viewer
mode. Now fixed. </span></p>
<p class=MsoNormal><span lang=EN-US>Fixed Landmarks: Earlier versions were losing
these every time PAMGuard started or new data were loaded in viewer mode. Now
fixed. </span></p>
<p class=MsoNormal><span lang=EN-US>ROCCA: Fixed (another) memory leak which
caused PAMGuard to crash when processing large data sets with the ROCCA classifier.
</span></p>
<p class=MsoNormal><span lang=EN-US>ROCCA: Fixed (another) memory leak which caused
PAMGuard to crash when processing large data sets with the ROCCA classifier. </span></p>
<p class=MsoNormal><span lang=EN-US>Ishmael Modules: Fixed bug which
occasionally caused crashes when processing many files offline. </span></p>
@ -551,8 +561,8 @@ low DPI screens. </span></p>
<p class=MsoNormal><span lang=EN-US>Complete rewrite of the classification
system to have nested classifiers which can be enabled or disabled. </span></p>
<p class=MsoNormal><span lang=EN-US>Changes to classification GUI to
accommodate the new classification system.</span></p>
<p class=MsoNormal><span lang=EN-US>Changes to classification GUI to accommodate
the new classification system.</span></p>
<p class=MsoNormal><span lang=EN-US>Addition of data selectors to the minimum
number of clicks accepted by the classifier. This allows the click-by-click
@ -581,8 +591,8 @@ description of the algorithm, screen grabs and examples.</span></p>
<p class=MsoNormal><span lang=EN-US>Help documentation for Matched Click
Classifier</span></p>
<p class=MsoNormal><span lang=EN-US>Database logging of offline tasks (such as
click re-classification, bearing calculation, etc.)</span></p>
<p class=MsoNormal><span lang=EN-US>Database logging of offline tasks (such as click
re-classification, bearing calculation, etc.)</span></p>
<p class=MsoNormal><span lang=EN-US>Data selector for Whistle Classifier module</span></p>
@ -657,9 +667,8 @@ the TF FX display to crash if no data were displayed.</span></p>
<p class=MsoNormal><span lang=EN-US>See major release notes for V 2.02.01
below. </span></p>
<p class=MsoNormal><span lang=EN-US>Bug 495: TD FX display throws
NullPointerException if user has removed all data units and then moves mouse
over display area.</span></p>
<p class=MsoNormal><span lang=EN-US>Bug 495: TD FX display throws NullPointerException
if user has removed all data units and then moves mouse over display area.</span></p>
<h1><a name="_Latest_Version_2.02.01"></a><span lang=EN-US>Version 2.02.01
October 2021</span></h1>
@ -682,11 +691,11 @@ font-family:"Times New Roman",serif'>&nbsp;</span></p>
<h2>File Format Change</h2>
<p class=MsoNormal>Changes have been made to the binary file format to support
the output of additional noise outputs for certain detectors (See below).
Binary files created with this version will not be compatible with earlier
versions 2.01.### and below. This version will read and may convert earlier
format binary files.</p>
<p class=MsoNormal>Changes have been made to the binary file format to support the
output of additional noise outputs for certain detectors (See below). Binary
files created with this version will not be compatible with earlier versions
2.01.### and below. This version will read and may convert earlier format
binary files.</p>
<p class=MsoNormal style='margin-bottom:0cm'><span style='font-size:12.0pt;
font-family:"Times New Roman",serif'>&nbsp;</span></p>
@ -816,20 +825,20 @@ decimating/upsampling by a non-integer amount </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>16. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
Noise Level Outputs - as an aid to performance diagnosis, some detectors
(currently the GPL, Click Detector and Whistle and Moan Detector) are outputting
additional noise metrics to their binary output files. These can be read with
the <a href="https://sourceforge.net/projects/pamguard/files/Matlab/">PAMGuard
Matlab library</a> and used to diagnose system performance in varying noise
conditions. Improved displays within PAMGuard for these noise metrics will be
included in a future release. </p>
(currently the GPL, Click Detector and Whistle and Moan Detector) are
outputting additional noise metrics to their binary output files. These can be
read with the <a href="https://sourceforge.net/projects/pamguard/files/Matlab/">PAMGuard
Matlab library</a> and used to diagnose system performance in varying noise conditions.
Improved displays within PAMGuard for these noise metrics will be included in a
future release. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>17. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
An implementation of the Generalized Power Law Detector, developed by Tyler
Helble ([Helble et al., ÃÂA generalized power-law detection algorithm for humpback
whale vocalizationsÃÂ, The Journal of the Acoustical Society of America, vol.
131, no. 4, pp. 2682ÃÂ2699, 2012) is now available. For details, see the
online help </p>
Helble ([Helble et al., ÃÂA generalized power-law detection algorithm for
humpback whale vocalizationsÃÂ, The Journal of the Acoustical Society of
America, vol. 131, no. 4, pp. 2682ÃÂ2699, 2012) is now available. For
details, see the online help </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>18. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
@ -941,9 +950,10 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nb
lang=EN-US> </span>Better auto-scaling in Ishmael Detector graphics window. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>7. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
Change to Windows temporary folder location, to get around Windows Security
settings that were preventing some modules from working properly. </p>
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
lang=EN-US> </span>Change to Windows temporary folder location, to get around
Windows Security settings that were preventing some modules from working
properly. </p>
<!-- ************************************************************************************************************************** --><!-- ************************************************************************************************************************** -->
@ -1171,8 +1181,8 @@ lang=EN-US> </span>Bug 436. Bug in Serial Port interface was occassionally
causing PAMGuard to crash without error message.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
Bug 437. Right whale detector crashing if no input was set.</p>
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
lang=EN-US> </span>Bug 437. Right whale detector crashing if no input was set.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
@ -1244,8 +1254,8 @@ classify clicks. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
lang=EN-US> </span>Added option in Sound Acquisition settings dialog to
override filename time stamp and use PC local time instead. </p>
lang=EN-US> </span>Added option in Sound Acquisition settings dialog to override
filename time stamp and use PC local time instead. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
@ -1462,10 +1472,10 @@ lang=EN-US> </span>Added adaptive noise filter to Ishmael Detectors.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
lang=EN-US> </span>Many upgrades to the Sound Playback module, including a
high-pass filter, gain control, and the ability to mix wavefrom and envelope
data together to listen to high-frequency clicks and dolphin whistles at the
same time.</p>
lang=EN-US> </span>Many upgrades to the Sound Playback module, including a high-pass
filter, gain control, and the ability to mix wavefrom and envelope data
together to listen to high-frequency clicks and dolphin whistles at the same
time.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
@ -1621,9 +1631,9 @@ lang=EN-US> </span>Added decimal degrees option to latitude/longitude dialog.</p
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
lang=EN-US> </span>Added option in the Click Delay parameters to restrict the
number of initial samples used in the calculation. This can be useful for
cleaning up delays in the presence of echoes and small time delays.</p>
lang=EN-US> </span>Added option in the Click Delay parameters to restrict the number
of initial samples used in the calculation. This can be useful for cleaning up
delays in the presence of echoes and small time delays.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
@ -1721,10 +1731,10 @@ lang=EN-US> </span>Better way of coupling scrollers in User Display panels -
see new options in main menu.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
Added Matched Template Click Classifier. Classifies clicks based on an ideal
template to match and a template to reject. An example of this is to classify
beaked whale clicks in an environment with dolphin clicks.</p>
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
lang=EN-US> </span>Added Matched Template Click Classifier. Classifies clicks
based on an ideal template to match and a template to reject. An example of
this is to classify beaked whale clicks in an environment with dolphin clicks.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
@ -1736,10 +1746,10 @@ lang=EN-US> </span>Added ability to read differential GPS data.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
lang=EN-US> </span>Added check for duplicate settings in the psf file when
exiting Pamguard. If duplicate settings are found, user is given the option to
leave them in the psf or get rid of them. Duplicate settings are ignored by
Pamguard, but can cause the psf file to grow large over time.</p>
lang=EN-US> </span>Added check for duplicate settings in the psf file when exiting
Pamguard. If duplicate settings are found, user is given the option to leave
them in the psf or get rid of them. Duplicate settings are ignored by Pamguard,
but can cause the psf file to grow large over time.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
@ -1884,8 +1894,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nb
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>Bug 359. Pamguard crashes when selecting auto-scale option in Noise
Monitor module</p>
</span>Bug 359. Pamguard crashes when selecting auto-scale option in Noise Monitor
module</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -1912,8 +1922,8 @@ Beta versions</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>11. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>Bug 366. Rocca manual whistle contour extraction throws error when
trying to classify a boxed whistle</p>
</span>Bug 366. Rocca manual whistle contour extraction throws error when trying
to classify a boxed whistle</p>
<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
@ -1988,8 +1998,8 @@ invalid parameters. Have added diagnostics to prevent this.</p>
<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
User is now able to specify Soundtrap date/time format</p>
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
lang=EN-US> </span>User is now able to specify Soundtrap date/time format</p>
<!-- ************************************************************************************************************************** -->
@ -2035,8 +2045,8 @@ Upgraded jFLAC library to fix.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>7.</span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>Bug 332. Fixed problem with secondary maps (those not in the main
display) not displaying detections.</p>
</span>Bug 332. Fixed problem with secondary maps (those not in the main display)
not displaying detections.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>8.</span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -2161,10 +2171,10 @@ so they will no longer work with older PAMGuard versions.</span></p>
<p class=MsoListParagraph style='margin-left:54.0pt;text-indent:-36.0pt'><span
lang=EN-US>2.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span><span lang=EN-US>Display colour options will be lost and most data displayed
on the map may default to black. This is due to the above changes to how
colours are managed. Changing back to the colours of your choice is relatively
simple through the PAMGuard GUI. </span></p>
</span><span lang=EN-US>Display colour options will be lost and most data
displayed on the map may default to black. This is due to the above changes to
how colours are managed. Changing back to the colours of your choice is
relatively simple through the PAMGuard GUI. </span></p>
<p class=MsoListParagraph style='margin-left:54.0pt;text-indent:-36.0pt'><span
lang=EN-US>&nbsp;</span></p>
@ -2324,8 +2334,8 @@ both 64 bit and 32 bit installations. PAMGuard psf files are now registered in
the Windows Registry, so double-clicking on a psf file should run PAMGuard in
normal mode (as opposed to Viewer or Mixed modes). Note that the Windows
Registry can only hold a single executable reference for psf files; therefore,
for users with multiple installations of PAMGuard, double-clicking on a psf
will run the most-recently installed version of PAMGuard on the system.</span></p>
for users with multiple installations of PAMGuard, double-clicking on a psf will
run the most-recently installed version of PAMGuard on the system.</span></p>
<h1><a name="_Latest_Version_1.15.08"></a><span lang=EN-US>Version 1.15.08
November 2016</span></h1>
@ -2358,10 +2368,10 @@ high sample rate. </span></p>
<p class=MsoListParagraph style='text-indent:-18.0pt'>2.<span style='font-size-adjust: none;
font-stretch: normal'><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span></span><span lang=EN-US>Bug 305. Date and Time not being correctly
extracted from wav files created using SoundTrap recorders. Fixed by correctly
finding and unpacking information in the accompanying xml log files that come
with SoundTrap files. </span></p>
</span></span><span lang=EN-US>Bug 305. Date and Time not being correctly extracted
from wav files created using SoundTrap recorders. Fixed by correctly finding
and unpacking information in the accompanying xml log files that come with
SoundTrap files. </span></p>
<h1><a name="_Latest_Version_1.15.06"></a><span lang=EN-US>Version 1.15.06
November 2016</span></h1>
@ -2488,8 +2498,8 @@ detector has been tidied up so that there are a) All Click, b) Tracked Clicks
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span><span lang=EN-US>When tracking online, all the click marking information
is written to the same database tables as are used for offline target motion
analysis. This means than when reviewing data offline, the tracks created in real
time are now available for review and further analysis. </span></p>
analysis. This means than when reviewing data offline, the tracks created in
real time are now available for review and further analysis. </span></p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4.</span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -2591,9 +2601,9 @@ changes in future releases. New PAMGuard releases will always be able to open
older binary files, however, with previous PAMGuard releases if a newer file
format was opened, then PAMGuard was unable to check that the file format was
newer and would attempt to read the files and might even corrupt them. Now it
will recognise that it cannot open the files, display appropriate error
messages and not attempt to read the files. NOTE that at this time there are no
planned file format changes and that this is purely a future proofing exercise.</p>
will recognise that it cannot open the files, display appropriate error messages
and not attempt to read the files. NOTE that at this time there are no planned
file format changes and that this is purely a future proofing exercise.</p>
<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>7.<span
style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -2719,8 +2729,8 @@ same click multiple times</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1.</span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span><span lang=EN-US>Bug 253. Database import fails when Access database
contains queries. Fixed.</span></p>
</span><span lang=EN-US>Bug 253. Database import fails when Access database contains
queries. Fixed.</span></p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -2794,13 +2804,13 @@ for details. </span></p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span><span lang=EN-US>GPS Loading into PAMGuard Viewer. This has been
modified so that the rules governing GPS data collection and storage also apply
when loading data from the database. For instance, if you've stored all GPS
data, you've probably got a record every second in the database which can
create memory overflows if you try to load a lot of data in the viewer. You can
now tell PAMGuard to only load a data point every n seconds which will reduce
the number of points loaded. Useful when making large scale overview maps of a
</span><span lang=EN-US>GPS Loading into PAMGuard Viewer. This has been modified
so that the rules governing GPS data collection and storage also apply when
loading data from the database. For instance, if you've stored all GPS data,
you've probably got a record every second in the database which can create
memory overflows if you try to load a lot of data in the viewer. You can now
tell PAMGuard to only load a data point every n seconds which will reduce the
number of points loaded. Useful when making large scale overview maps of a
survey. </span></p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4.</span><span
@ -2954,9 +2964,9 @@ href="http://dev.mysql.com/downloads/mysql/">http://dev.mysql.com/downloads/mysq
<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
lang=EN-US>6.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span><span lang=EN-US>Changed Rocca Measurement menu item to open a window
containing click events, instead of a submenu listing click events.&nbsp; Using
a window simplifies multiple event selections</span></p>
</span><span lang=EN-US>Changed Rocca Measurement menu item to open a window containing
click events, instead of a submenu listing click events.&nbsp; Using a window
simplifies multiple event selections</span></p>
<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
lang=EN-US>7.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -3099,8 +3109,9 @@ to read on a time. Fixed</p>
<p class=MsoNormal><i>Menu Layout</i></p>
<p class=MsoNormal>The PAMGuard menus have been rearranged into a more intuitive
grouping which we believe will help users find functionality more easily. </p>
<p class=MsoNormal>The PAMGuard menus have been rearranged into a more
intuitive grouping which we believe will help users find functionality more
easily. </p>
<p class=MsoNormal>'Detection' menu has been renamed to 'Settings' since many
menu items within this menu were not directly to do with 'Detection'.</p>
@ -3172,8 +3183,8 @@ correctly calculated in real world coordinates. </p>
<p class=MsoNormal><i>Wild ArcGIS Interface</i> (Maps and Mapping group)</p>
<p class=MsoNormal>This module, developed by Michael Oswald / SWFSC, allows
PAMGuard to output data in a format suitable for display in the WILD ArcGIS marine
mammal survey package. See online help for details. </p>
PAMGuard to output data in a format suitable for display in the WILD ArcGIS
marine mammal survey package. See online help for details. </p>
<p class=MsoNormal><i>Alarms</i> (Utilities Group)</p>
@ -3230,9 +3241,9 @@ different. Details are available in the online help. </p>
<p class=MsoNormal>Can now read raw audio data direct from FLAC files. <a
href="http://en.wikipedia.org/wiki/FLAC">FLAC</a> is a lossless compression
algorithm for audio data. Files, or folders of files are accessed in the same
way as WAV and AIFF files in the Sound Acquisition module. In a future release
we also hope to provide support for writing FLAC files from the sound recorder
algorithm for audio data. Files, or folders of files are accessed in the same way
as WAV and AIFF files in the Sound Acquisition module. In a future release we
also hope to provide support for writing FLAC files from the sound recorder
module. </p>
<p class=MsoNormal><i>Sound Recorder Module</i></p>
@ -3290,8 +3301,8 @@ whistle.</p>
<li class=MsoNormal style='margin-bottom:0cm'>Ishmael Detector configuration.
It was impossible to correctly configure these detectors and configuration
settings were not being saved correctly. This has now been rectified. </li>
<li class=MsoNormal style='margin-bottom:0cm'>Logger forms input of character
data. Was causing an exception when character input fields were cleared. </li>
<li class=MsoNormal style='margin-bottom:0cm'>Logger forms input of character data.
Was causing an exception when character input fields were cleared. </li>
<li class=MsoNormal style='margin-bottom:0cm'>Click detector inter click
interval display was not working in viewer mode. This has been rectified. </li>
<li class=MsoNormal style='margin-bottom:0cm'>Configuration loading. This has
@ -3370,8 +3381,8 @@ to these menus to provide additional information to users. &nbsp;</p>
the radar display so that bearings can be shown relative to either the vessel
or to true North. </p>
<p class=MsoNormal style='margin-left:36.0pt'>Better control of data in viewer
mode, making is easy to scroll through and view data for short time periods. </p>
<p class=MsoNormal style='margin-left:36.0pt'>Better control of data in viewer mode,
making is easy to scroll through and view data for short time periods. </p>
<p class=MsoNormal style='margin-left:36.0pt'><i>GPS</i></p>
@ -3475,9 +3486,9 @@ have implemented database storage for output of these modules. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>Radar Display: A bug which stopped the radar display from correctly displaying
bearings to whistles from arrays containing more than two hydrophone elements
has been fixed. </p>
</span>Radar Display: A bug which stopped the radar display from correctly
displaying bearings to whistles from arrays containing more than two hydrophone
elements has been fixed. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -3589,8 +3600,8 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>Bearings can be calculated using the envelope of the waveform rather than
the full waveform. The waveform or envelope can also be filtered prior to
</span>Bearings can be calculated using the envelope of the waveform rather
than the full waveform. The waveform or envelope can also be filtered prior to
bearing calculation.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
@ -3682,9 +3693,9 @@ the correct data stream. This has been fixed. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>Whistle classifier has some new features in the classifier training
panel. It is also now possible to export training data files directly from
binary data files. </p>
</span>Whistle classifier has some new features in the classifier training panel.
It is also now possible to export training data files directly from binary data
files. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -3746,8 +3757,8 @@ frequency division (i.e. previous versions would convert well from 96kHz to
<p class=MsoNormal><b>Bug fixes</b></p>
<p class=MsoNormal>1. Placement of axes on some displays (array manager and depth
side panel). Problem in 1.9.01 Beta now fixed. </p>
<p class=MsoNormal>1. Placement of axes on some displays (array manager and
depth side panel). Problem in 1.9.01 Beta now fixed. </p>
<p class=MsoNormal>2. Fixed problems of NMEA read out not restarting after a
serial drop out. NMEA now restarts correctly. </p>
@ -3782,9 +3793,9 @@ become too bit to fit on a screen. </p>
PAMGUARD display. </p>
<p class=MsoNormal>Windows Installer now sets permissions on PAMGUARD folder so
that don't need to be an administrator in order to create new files in that
directory. Prevents problems especially under Vista/Windows 7 when saving psfs
and recording sounds to the default directory.&nbsp; </p>
that don't need to be an administrator in order to create new files in that directory.
Prevents problems especially under Vista/Windows 7 when saving psfs and
recording sounds to the default directory.&nbsp; </p>
<h2>Version 1.9.00 Beta April 2010</h2>
@ -3948,13 +3959,13 @@ channels are assigned to a hydrophone. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>Play back of high frequency wav files through National Instruments (NI)
cards: When analysing wav files, sound can be output at high frequency
(depending on the specification of the NI card). The primary motivation for
this has been to develop a test bed for high frequency sound acquisition
whereby we can play 500kHz recordings of harbour porpoise out of an NI card on
one machine, into NI cards on a different machine which are testing high
frequency versions of the click detector.</p>
</span>Play back of high frequency wav files through National Instruments (NI) cards:
When analysing wav files, sound can be output at high frequency (depending on
the specification of the NI card). The primary motivation for this has been to
develop a test bed for high frequency sound acquisition whereby we can play
500kHz recordings of harbour porpoise out of an NI card on one machine, into NI
cards on a different machine which are testing high frequency versions of the
click detector.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -4022,10 +4033,10 @@ synchronisation.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>Wigner time-frequency plot for the click detector. Clicks are NOT automatically
displayed in the Winger window as they are for the waveform and spectrum
windows since the Wigner transformation is very time consuming. Clicks will be
displayed if you select them with the mouse.</p>
</span>Wigner time-frequency plot for the click detector. Clicks are NOT
automatically displayed in the Winger window as they are for the waveform and
spectrum windows since the Wigner transformation is very time consuming. Clicks
will be displayed if you select them with the mouse.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -4039,13 +4050,13 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
features in array dialog for estimations of errors on array location. These
feed into to a maximum likelihood estimate of angles from small 2D or 3D sub
arrays to give two polar angle coordinates. this can be used to resolve left
right ambiguity and is implemented for both the click and the whistle/moan
detectors. As a result, the click detector bearing time display can now be set
to go from -180 to 180 degrees rather than 0 - 180 degrees. In this case,
clicks in the upper half of the bearing display will be to port and clicks in
the right half will be to starboard. As you pass a whale which is to port, the
clicks will move UP the display. In the long term, I hope to turn this display
around so that time is up the screen rather than across.&nbsp; </p>
right ambiguity and is implemented for both the click and the whistle/moan detectors.
As a result, the click detector bearing time display can now be set to go from
-180 to 180 degrees rather than 0 - 180 degrees. In this case, clicks in the
upper half of the bearing display will be to port and clicks in the right half
will be to starboard. As you pass a whale which is to port, the clicks will
move UP the display. In the long term, I hope to turn this display around so
that time is up the screen rather than across.&nbsp; </p>
<p class=MsoNormal><b>Small features and bug fixes</b></p>
@ -4120,9 +4131,9 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>Channel lists in output data streams of Decimator and other modules fixed,
so that when channel numbers change, downstream modules configurations get the
correct list of available channels. </p>
</span>Channel lists in output data streams of Decimator and other modules
fixed, so that when channel numbers change, downstream modules configurations
get the correct list of available channels. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -4701,7 +4712,8 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
<h2>0.5b&nbsp;&nbsp;&nbsp; 31 August 2007 </h2>
<p class=MsoNormal>Requires Java 6 Update 2 (http://java.com/en/download/manual.jsp)</p>
<p class=MsoNormal>Requires Java 6 Update 2
(http://java.com/en/download/manual.jsp)</p>
<p class=MsoNormal>Major new features include:</p>
@ -4744,8 +4756,8 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
<p class=MsoNormal>&nbsp;</p>
<p class=MsoNormal><a name="_Toc312065304"></a><a name="_Toc312063949"></a><span
class=Heading2Char><span style='font-size:13.0pt'>1.0Beta 22 Jan 2008 - Pamguard
starts two releases, core and beta release</span></span>, </p>
class=Heading2Char><span style='font-size:13.0pt'>1.0Beta 22 Jan 2008 -
Pamguard starts two releases, core and beta release</span></span>, </p>
<p class=MsoNormal>this is the beta release</p>
@ -4763,8 +4775,8 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>Multi animal click tracking with least squares fit calculation of position
on map</p>
</span>Multi animal click tracking with least squares fit calculation of
position on map</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -4819,10 +4831,10 @@ configurable user displays which support real time scrolling spectrograms and
radar displays. Detection and localisation information can be optionally
displayed on the map display.Map enhancements include improved scrolling
whereby the user can click and drag to pan the area. PamGuard can now interface
with MySQL database servers and users can easily select which information is
logged. (This replaces the previous 'flat-file' logging feature). A simulation
module allows virtual vocalising animals to be placed on the map to assist in
training and development. Extensive online user help has been added to PamGuard
with MySQL database servers and users can easily select which information is logged.
(This replaces the previous 'flat-file' logging feature). A simulation module
allows virtual vocalising animals to be placed on the map to assist in training
and development. Extensive online user help has been added to PamGuard
Application</p>
<h2>0.03b - first version used in a real 'at sea' environment.18/08/06</h2>

View File

@ -1,5 +1,6 @@
package PamController.settings;
import java.io.ByteArrayInputStream;
import java.io.EOFException;
import java.io.File;
import java.io.FileInputStream;
@ -14,6 +15,7 @@ import PamController.PamController;
import PamController.PamSettingManager;
import PamController.PamSettings;
import PamController.PamSettingsGroup;
import PamModel.PamModel;
import PamModel.PamModuleInfo;
import PamModel.SMRUEnable;
import PamView.dialog.PamFileBrowser;
@ -226,7 +228,13 @@ public class SettingsImport {
ownerClass = Class.forName(aSet.getOwnerClassName());
} catch (ClassNotFoundException e) {
// TODO Auto-generated catch block
e.printStackTrace();
// e.printStackTrace();
// this is happening since the ownerclassname is not set correctly in psfx files
// so we have to deserialise the data to find the class.
// ownerClass = getClassFromData(aSet.getSerialisedByteArray());
// ownerClass = PamModuleInfo.findModuleClass(aSet.getUnitType());
}
if (ownerClass == null) {
continue;
}
if (PamControlledUnit.class.isAssignableFrom(ownerClass)) {
@ -263,6 +271,17 @@ public class SettingsImport {
return groupedSettings;
}
private Class getClassFromData(byte[] data) {
try {
ObjectInputStream ois = new ObjectInputStream(new ByteArrayInputStream(data));
Object obj = ois.readObject();
return obj.getClass();
} catch (Exception e) {
return null;
}
}
private SettingsImportGroup findGroup(ArrayList<SettingsImportGroup> groupedSettings, String unitName) {
for (SettingsImportGroup iG:groupedSettings) {

View File

@ -282,6 +282,7 @@ public class PamModuleInfo implements PamDependent{
return moduleClass;
}
public static JMenu getModulesMenu(Frame parentFrame) {