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4a7f99d55d
Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
36 lines
1.1 KiB
Nix
36 lines
1.1 KiB
Nix
{ lib, stdenv, fetchFromGitHub, cmake, zlib, python2 }:
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stdenv.mkDerivation rec {
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pname = "manta";
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version = "1.6.0";
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src = fetchFromGitHub {
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owner = "Illumina";
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repo = "manta";
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rev = "v${version}";
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sha256 = "1711xkcw8rpw9xv3bbm7v1aryjz4r341rkq5255192dg38sgq7w2";
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};
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nativeBuildInputs = [ cmake ];
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buildInputs = [ zlib python2 ];
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postFixup = ''
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sed -i 's|/usr/bin/env python2|${python2.interpreter}|' $out/lib/python/makeRunScript.py
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sed -i 's|/usr/bin/env python|${python2.interpreter}|' $out/lib/python/pyflow/pyflow.py
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sed -i 's|/bin/bash|${stdenv.shell}|' $out/lib/python/pyflow/pyflowTaskWrapper.py
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'';
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doInstallCheck = true;
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installCheckPhase = ''
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rm $out/lib/python/**/*.pyc
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PYTHONPATH=$out/lib/python:$PYTHONPATH python -c 'import makeRunScript'
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PYTHONPATH=$out/lib/python/pyflow:$PYTHONPATH python -c 'import pyflowTaskWrapper; import pyflow'
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'';
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meta = with lib; {
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description = "Structural variant caller";
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license = licenses.gpl3;
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homepage = "https://github.com/Illumina/manta";
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maintainers = with maintainers; [ jbedo ];
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platforms = platforms.x86_64;
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};
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}
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