mirror of
https://github.com/NixOS/nixpkgs.git
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16806 lines
770 KiB
JSON
16806 lines
770 KiB
JSON
{
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"extraArgs": {
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"biocVersion": "3.20"
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},
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"packages": {
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"ABSSeq": {
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"name": "ABSSeq",
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"version": "1.60.0",
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"sha256": "02yypkrvd2gbclcddjvw5zdl4crh286ifddxj5cix1d4hhas1gc4",
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"depends": ["limma", "locfit"]
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},
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"ABarray": {
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"name": "ABarray",
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"version": "1.74.0",
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"sha256": "0iay7aai5ijg0ai42mz4sks6qvndy69hdwavy5qvbhgfsgbdpmxv",
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"depends": ["Biobase", "multtest"]
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},
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"ACE": {
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"name": "ACE",
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"version": "1.24.0",
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"sha256": "0ky6l0x5wbwil0lqnclgfpdhn94954k62xpv0z3mhy4lvqf07h4j",
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"depends": ["Biobase", "GenomicRanges", "QDNAseq", "ggplot2"]
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},
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"ACME": {
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"name": "ACME",
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"version": "2.62.0",
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"sha256": "05lvljiq3wgn0xqax8nhrsfwfxkslch9fyzk8v7qdvi72j0j3g9b",
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"depends": ["Biobase", "BiocGenerics"]
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},
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"ADAM": {
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"name": "ADAM",
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"version": "1.22.0",
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"sha256": "044r6ykd3kv1zswmnw82q961mxywcmxxyj9x55z6qbykww5868lz",
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"depends": ["DT", "GO_db", "KEGGREST", "Rcpp", "SummarizedExperiment", "dplyr", "knitr", "pbapply", "stringr"]
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},
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"ADAMgui": {
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"name": "ADAMgui",
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"version": "1.22.0",
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"sha256": "1gpc5gzrwlji7a0vlr1jidn1c2nkzdv8qb82jhrg5yfglaxf1ddd",
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"depends": ["ADAM", "DT", "GO_db", "RColorBrewer", "colorRamps", "data_table", "dplyr", "ggplot2", "ggpubr", "ggrepel", "ggsignif", "gridExtra", "knitr", "reshape2", "shiny", "shinyjs", "stringi", "stringr", "testthat", "varhandle"]
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},
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"ADAPT": {
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"name": "ADAPT",
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"version": "1.0.0",
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"sha256": "111k0q40znpjacqkgcswjdp5iqbxxx60d1bjkziazgk3kgz6ly44",
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"depends": ["Rcpp", "RcppArmadillo", "RcppParallel", "ggplot2", "ggrepel", "phyloseq"]
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},
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"ADImpute": {
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"name": "ADImpute",
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"version": "1.16.0",
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"sha256": "1738j07hk2kj7w29vba1xhxnjj5w2zxcf59d3r4mwrxbhc771sqy",
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"depends": ["BiocParallel", "DrImpute", "MASS", "Matrix", "S4Vectors", "SAVER", "SingleCellExperiment", "SummarizedExperiment", "checkmate", "data_table", "kernlab", "rsvd"]
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},
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"ADaCGH2": {
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"name": "ADaCGH2",
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"version": "2.46.0",
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"sha256": "1pzzbqh5wflhn9zqpdggx80y6zhdzg6i4xwgzjrh89bq90ibck04",
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"depends": ["DNAcopy", "GLAD", "aCGH", "bit", "cluster", "ff", "tilingArray", "waveslim"]
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},
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"AGDEX": {
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"name": "AGDEX",
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"version": "1.54.0",
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"sha256": "02kldgslgyx5xr5zn45vndai37j66wp4xdjpvasdv46b7rm7drx2",
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"depends": ["Biobase", "GSEABase"]
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},
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"AHMassBank": {
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"name": "AHMassBank",
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"version": "1.6.0",
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"sha256": "1z9sd8rkzq4bgx3abrm2d31kmxq3q8b2lrkp45gw46026nvz8217",
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"depends": ["AnnotationHubData"]
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},
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"AIMS": {
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"name": "AIMS",
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"version": "1.38.0",
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"sha256": "04xch3ld6f9bwsp3v8m1klxppr52flaj0svk2fjak5m9dar5lg0b",
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"depends": ["Biobase", "e1071"]
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},
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"ALDEx2": {
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"name": "ALDEx2",
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"version": "1.38.0",
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"sha256": "1c22h27w852b5mbniw6266r8pxf28ii5czi8iki6ik9k3l4n6xzd",
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"depends": ["BiocParallel", "GenomicRanges", "IRanges", "Rfast", "S4Vectors", "SummarizedExperiment", "directlabels", "lattice", "latticeExtra", "multtest", "zCompositions"]
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},
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"AMARETTO": {
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"name": "AMARETTO",
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"version": "1.22.0",
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"sha256": "0lk7rd4ipwgx2mzwwy9kc4ngd9849p804499xdwy2j4ygq01zrkq",
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"depends": ["BiocFileCache", "ComplexHeatmap", "DT", "Matrix", "MultiAssayExperiment", "Rcpp", "callr", "circlize", "curatedTCGAData", "doParallel", "dplyr", "foreach", "ggplot2", "glmnet", "gridExtra", "httr", "impute", "knitr", "limma", "matrixStats", "readr", "reshape2", "rmarkdown", "tibble"]
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},
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"AMOUNTAIN": {
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"name": "AMOUNTAIN",
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"version": "1.32.0",
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"sha256": "0w1m0y9q7vksxnhxa8gz3fl47niss7zcbvvrjsdrf82yx6x8vp6j",
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"depends": []
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},
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"ANCOMBC": {
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"name": "ANCOMBC",
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"version": "2.8.0",
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"sha256": "0cbz7yxrci57divf85d9ffkzi1rh7xy2ara9x1wng75vc0qcnj9c",
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"depends": ["CVXR", "DescTools", "Hmisc", "MASS", "Matrix", "Rdpack", "doParallel", "doRNG", "energy", "foreach", "gtools", "lme4", "lmerTest", "multcomp", "nloptr"]
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},
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"ANF": {
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"name": "ANF",
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"version": "1.28.0",
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"sha256": "1v1lzd0lbg21z1gyca1p45p50akznjlq0b3999sny7hfh20954fr",
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"depends": ["Biobase", "MASS", "RColorBrewer", "igraph", "survival"]
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},
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"APAlyzer": {
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"name": "APAlyzer",
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"version": "1.20.0",
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"sha256": "06zalaf2lqw0ba3wa47mfdj4nidqs4i0arcqnpdrgdnjw1b679mv",
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"depends": ["DESeq2", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "HybridMTest", "Rsamtools", "Rsubread", "SummarizedExperiment", "VariantAnnotation", "dplyr", "ggplot2", "ggrepel", "repmis", "rtracklayer", "tidyr"]
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},
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"APL": {
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"name": "APL",
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"version": "1.10.2",
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"sha256": "0z3djj3sdr10i8virdp21fn7vv8jg99v6868234rvzkghyij3i68",
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"depends": ["Matrix", "RSpectra", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "ggrepel", "magrittr", "org_Hs_eg_db", "org_Mm_eg_db", "plotly", "rlang", "topGO", "viridisLite"]
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},
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"ARRmNormalization": {
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"name": "ARRmNormalization",
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"version": "1.46.0",
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"sha256": "0v6b86gaqszbbp8dx9i8bkz95lxkb4ci20w1l596b3vzqs2a8fb2",
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"depends": ["ARRmData"]
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},
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"ASAFE": {
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"name": "ASAFE",
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"version": "1.32.0",
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"sha256": "0q7rv3aasc8xdl0mamggncgs2cdyqyagq4rnskc0c3qccb7mvakg",
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"depends": []
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},
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"ASEB": {
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"name": "ASEB",
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"version": "1.50.0",
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"sha256": "0ks9h4gzsjpjjwifscid9y175kdshqng22rqc129fq4ch17pd0bs",
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"depends": []
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},
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"ASGSCA": {
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"name": "ASGSCA",
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"version": "1.40.0",
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"sha256": "1c004m9n7z7xg15pd212gjxsawir68xvqrhsxgsm5vz7viwmyqqr",
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"depends": ["MASS", "Matrix"]
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},
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"ASICS": {
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"name": "ASICS",
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"version": "2.22.0",
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"sha256": "1ab8j2rmqig1c25z70ys5ip9818idy0md2a755lz0jcy0srk425j",
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"depends": ["BiocParallel", "Matrix", "PepsNMR", "SummarizedExperiment", "ggplot2", "glmnet", "gridExtra", "mvtnorm", "plyr", "quadprog", "ropls", "zoo"]
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},
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"ASSET": {
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"name": "ASSET",
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"version": "2.24.0",
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"sha256": "0lq07mq7ai51c1dkjkmjrafq3caw6wpzrpbfsbqa3dyjn3vp3c04",
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"depends": ["MASS", "msm", "rmeta"]
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},
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"ASSIGN": {
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"name": "ASSIGN",
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"version": "1.42.0",
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"sha256": "0avr3zn9nyamcdkr5b9qklcl9gzk36w9w7ky6qwhm7innqhmfapp",
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"depends": ["Rlab", "ggplot2", "gplots", "msm", "sva", "yaml"]
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},
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"ASURAT": {
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"name": "ASURAT",
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"version": "1.10.0",
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"sha256": "0dak5kx8fwmz9kx2a2r7dgzg5d8jhbf5qx6014p4g54lxns0zxj5",
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"depends": ["ComplexHeatmap", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "circlize", "cluster", "plot3D"]
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},
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"ASpli": {
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"name": "ASpli",
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"version": "2.16.0",
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"sha256": "160cdm2f8mi3smnx5svaw0mhwnvcmqrl8hikhwj69fygh0razfix",
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"depends": ["AnnotationDbi", "BiocGenerics", "BiocStyle", "DT", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "MASS", "Rsamtools", "S4Vectors", "UpSetR", "data_table", "edgeR", "htmltools", "igraph", "limma", "pbmcapply", "tidyr", "txdbmaker"]
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},
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"ATACseqQC": {
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"name": "ATACseqQC",
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"version": "1.30.0",
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"sha256": "128ka9fzj8zy6mlccszi5xnq25ivhpgq08q9jsiazm65kzxpvqfb",
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"depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "ChIPpeakAnno", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "GenomicScores", "IRanges", "KernSmooth", "Rsamtools", "S4Vectors", "edgeR", "limma", "motifStack", "preseqR", "randomForest", "rtracklayer"]
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},
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"ATACseqTFEA": {
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"name": "ATACseqTFEA",
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"version": "1.8.0",
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"sha256": "08s06npspgggfg5vpw4iwmlx2ygbc19nwfp97pphc7lml0d3dhmb",
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"depends": ["BiocGenerics", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Matrix", "Rsamtools", "S4Vectors", "SummarizedExperiment", "TFBSTools", "dplyr", "ggplot2", "ggrepel", "limma", "motifmatchr", "pracma", "rtracklayer"]
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},
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"AUCell": {
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"name": "AUCell",
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"version": "1.28.0",
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"sha256": "1n5xb6qymfywglnnh1klxlqzhry78kwn8zlpvz7z06w6ixfc9q80",
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"depends": ["BiocGenerics", "DelayedArray", "DelayedMatrixStats", "GSEABase", "Matrix", "R_utils", "SummarizedExperiment", "data_table", "mixtools"]
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},
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"AWFisher": {
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"name": "AWFisher",
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"version": "1.20.0",
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"sha256": "040x6millcnii58q441zh99zkskl0v1s9g9cx54srhca25qywfnr",
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"depends": ["edgeR", "limma"]
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},
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"AffiXcan": {
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"name": "AffiXcan",
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"version": "1.24.0",
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"sha256": "1a76l58hl78f0cn602mxxisq7rbgm3ywb45nd20d5h01wmgv3bci",
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"depends": ["BiocParallel", "MultiAssayExperiment", "SummarizedExperiment", "crayon"]
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},
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"AffyRNADegradation": {
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"name": "AffyRNADegradation",
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"version": "1.52.0",
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"sha256": "1k7d2w377w9ab7f9j71mc92lx3w851mxbm7lrrbzv63zbv7cynbk",
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"depends": ["affy"]
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},
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"AgiMicroRna": {
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"name": "AgiMicroRna",
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"version": "2.56.0",
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"sha256": "1w1x1pzas8vq4x93700j4slkpq3xmwrm3w9zk3nf2366fxrjp65i",
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"depends": ["Biobase", "affy", "affycoretools", "limma", "preprocessCore"]
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},
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"AllelicImbalance": {
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"name": "AllelicImbalance",
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"version": "1.44.0",
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"sha256": "1grjrbq15xd05m819j7804v3hzrjnmqj7jmdypc2wn53jxnbpqf5",
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"depends": ["AnnotationDbi", "BSgenome", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "Rsamtools", "S4Vectors", "SummarizedExperiment", "VariantAnnotation", "gridExtra", "lattice", "latticeExtra", "nlme", "seqinr"]
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},
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"AlphaBeta": {
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"name": "AlphaBeta",
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"version": "1.20.0",
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"sha256": "0zyf38xa5dbk8n71l1bgk1d49ic0f009nggajggyhgsrgf5j14gr",
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"depends": ["BiocParallel", "data_table", "dplyr", "expm", "ggplot2", "gtools", "igraph", "optimx", "plotly", "stringr"]
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},
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"AlphaMissenseR": {
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"name": "AlphaMissenseR",
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"version": "1.2.0",
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"sha256": "0lmpij9k36hi8adp0mnbjagh6mfyykhvsyzyk1vabvbnqi9d3zxk",
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"depends": ["BiocBaseUtils", "BiocFileCache", "DBI", "curl", "dplyr", "duckdb", "ggplot2", "memoise", "rjsoncons", "rlang", "spdl", "whisker"]
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},
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"AlpsNMR": {
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"name": "AlpsNMR",
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"version": "4.8.0",
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"sha256": "0aqf87i96fgbjkwkpa86k6kika0xz5f1jw6zs1sjq56q63xnd4bx",
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"depends": ["BiocParallel", "baseline", "cli", "dplyr", "fs", "generics", "ggplot2", "glue", "htmltools", "magrittr", "matrixStats", "mixOmics", "pcaPP", "purrr", "readxl", "reshape2", "rlang", "rmarkdown", "scales", "signal", "speaq", "stringr", "tibble", "tidyr", "tidyselect", "vctrs"]
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},
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"AnVIL": {
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"name": "AnVIL",
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"version": "1.18.2",
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"sha256": "0hyva98m0sabyfbr8y418szla54p9p0ik7gq6nxmba17majyhp7b",
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"depends": ["AnVILBase", "BiocBaseUtils", "BiocManager", "DT", "dplyr", "futile_logger", "htmltools", "httr", "jsonlite", "miniUI", "rapiclient", "rlang", "shiny", "tibble", "tidyr", "tidyselect", "yaml"]
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},
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"AnVILAz": {
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"name": "AnVILAz",
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"version": "1.0.0",
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"sha256": "0b0rpq5f394y50djiwq1ldjr7wfvd4c4vw1nfdqzgizx6cybii7a",
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"depends": ["AnVILBase", "BiocBaseUtils", "curl", "httr2", "jsonlite", "rjsoncons", "tibble"]
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},
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"AnVILBase": {
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"name": "AnVILBase",
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"version": "1.0.0",
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"sha256": "0cjik5yvbbpryyawkqb6y38h92in0jkkm46a4kisbsif42hwa2i5",
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"depends": ["dplyr", "httr", "httr2", "jsonlite", "tibble"]
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},
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"AnVILBilling": {
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"name": "AnVILBilling",
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"version": "1.16.0",
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"sha256": "1g7j9q1n11nnyjkz68wrpavinchwfpshcs2bridag45n6l42zd16",
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"depends": ["DBI", "DT", "bigrquery", "dplyr", "ggplot2", "lubridate", "magrittr", "plotly", "shiny", "shinytoastr"]
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},
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"AnVILGCP": {
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"name": "AnVILGCP",
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"version": "1.0.0",
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"sha256": "0m0assxfq65smzqif7rqsqzlw0y8zjdnyq0nxij0snqzjd9a0iih",
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"depends": ["AnVILBase", "BiocBaseUtils", "dplyr", "httr", "jsonlite", "rlang", "tibble", "tidyr"]
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},
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"AnVILPublish": {
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"name": "AnVILPublish",
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"version": "1.16.0",
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"sha256": "1fyz9xaycm9skaisa0v8mr6bp57an29482sbj7yfqz8p421dydkp",
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"depends": ["AnVIL", "AnVILGCP", "BiocBaseUtils", "BiocManager", "httr", "jsonlite", "readr", "rmarkdown", "whisker", "yaml"]
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},
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"AnVILWorkflow": {
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"name": "AnVILWorkflow",
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"version": "1.6.0",
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"sha256": "0yix1ilxw3wz5x195bqj6n333kdqb4pqckpdar32sl28zx9ymhzr",
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"depends": ["AnVIL", "AnVILBase", "AnVILGCP", "dplyr", "httr", "jsonlite", "plyr", "rlang", "stringr", "tibble", "tidyr"]
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},
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"Anaquin": {
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"name": "Anaquin",
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"version": "2.30.0",
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"sha256": "0krfyb0bcc4vpna7ygyd9rqsdpnqmizlmf8sgpcyfk722dbavvdn",
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"depends": ["DESeq2", "ROCR", "ggplot2", "knitr", "locfit", "plyr", "qvalue"]
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},
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"AneuFinder": {
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"name": "AneuFinder",
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"version": "1.34.0",
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"sha256": "0zqbpip172w02d9iw3n10b0c3pcnk63fp28m886333wcsm7j84b0",
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"depends": ["AneuFinderData", "BiocGenerics", "Biostrings", "DNAcopy", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "bamsignals", "cowplot", "doParallel", "ecp", "foreach", "ggdendro", "ggplot2", "ggrepel", "mclust", "reshape2"]
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},
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"AnnotationDbi": {
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"name": "AnnotationDbi",
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"version": "1.68.0",
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"sha256": "13gqbmx7pqnl6g087kz1isnw61jbljq8pizzn5wf4hv9c76dlvpf",
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"depends": ["Biobase", "BiocGenerics", "DBI", "IRanges", "KEGGREST", "RSQLite", "S4Vectors"]
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},
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"AnnotationFilter": {
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"name": "AnnotationFilter",
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"version": "1.30.0",
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"sha256": "1a7ffcxdx95irbcr2sh7sph6x5lf7spnyq084pvx9qd18i6cif5n",
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"depends": ["GenomicRanges", "lazyeval"]
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