mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-12-15 10:12:58 +00:00
47 lines
1.2 KiB
Nix
47 lines
1.2 KiB
Nix
{stdenv, fetchFromGitHub, unzip, which, python3, perl}:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "hisat2";
|
|
version = "2.2.1";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "DaehwanKimLab";
|
|
repo = "hisat2";
|
|
rev = "v${version}";
|
|
sha256 = "0lmzdhzjkvxw7n5w40pbv5fgzd4cz0f9pxczswn3d4cr0k10k754";
|
|
};
|
|
|
|
nativeBuildInputs = [ unzip which ];
|
|
buildInputs = [ python3 perl ];
|
|
|
|
installPhase = ''
|
|
mkdir -p $out/bin
|
|
cp hisat2 \
|
|
hisat2-inspect-l \
|
|
hisat2-build-s \
|
|
hisat2-align-l \
|
|
hisat2-inspect \
|
|
hisat2-align-s \
|
|
hisat2-inspect-s \
|
|
hisat2-build-l \
|
|
hisat2-build \
|
|
extract_exons.py \
|
|
extract_splice_sites.py \
|
|
hisat2_extract_exons.py \
|
|
hisat2_extract_snps_haplotypes_UCSC.py \
|
|
hisat2_extract_snps_haplotypes_VCF.py \
|
|
hisat2_extract_splice_sites.py \
|
|
hisat2_simulate_reads.py \
|
|
$out/bin
|
|
'';
|
|
|
|
meta = with stdenv.lib; {
|
|
description = "Graph based aligner";
|
|
license = licenses.gpl3;
|
|
homepage = "https://ccb.jhu.edu/software/hisat2/index.shtml";
|
|
maintainers = with maintainers; [ jbedo ];
|
|
platforms = [ "x86_64-linux" "i686-linux" ];
|
|
};
|
|
|
|
}
|