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571c71e6f7
We are migrating packages that meet below requirements:
1. using `callPackage`
2. called path is a directory
3. overriding set is empty (`{ }`)
4. not containing path expressions other than relative path (to
makenixpkgs-vet happy)
5. not referenced by nix files outside of the directory, other
than`pkgs/top-level/all-packages.nix`
6. not referencing nix files outside of the directory
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The tool is here: https://github.com/Aleksanaa/by-name-migrate.
36 lines
1.1 KiB
Nix
36 lines
1.1 KiB
Nix
{ lib, stdenv, fetchFromGitHub, cmake, zlib, python2 }:
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stdenv.mkDerivation rec {
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pname = "manta";
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version = "1.6.0";
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src = fetchFromGitHub {
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owner = "Illumina";
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repo = "manta";
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rev = "v${version}";
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sha256 = "1711xkcw8rpw9xv3bbm7v1aryjz4r341rkq5255192dg38sgq7w2";
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};
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nativeBuildInputs = [ cmake ];
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buildInputs = [ zlib python2 ];
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postFixup = ''
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sed -i 's|/usr/bin/env python2|${python2.interpreter}|' $out/lib/python/makeRunScript.py
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sed -i 's|/usr/bin/env python|${python2.interpreter}|' $out/lib/python/pyflow/pyflow.py
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sed -i 's|/bin/bash|${stdenv.shell}|' $out/lib/python/pyflow/pyflowTaskWrapper.py
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'';
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doInstallCheck = true;
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installCheckPhase = ''
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rm $out/lib/python/**/*.pyc
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PYTHONPATH=$out/lib/python:$PYTHONPATH python -c 'import makeRunScript'
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PYTHONPATH=$out/lib/python/pyflow:$PYTHONPATH python -c 'import pyflowTaskWrapper; import pyflow'
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'';
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meta = with lib; {
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description = "Structural variant caller";
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license = licenses.gpl3;
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homepage = "https://github.com/Illumina/manta";
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maintainers = with maintainers; [ jbedo ];
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platforms = platforms.x86_64;
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};
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}
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